jgi.p|Nanoce1779_2|446043, mRNA_4887 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|446043
Unique NamemRNA_4887
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length828
Alignment locationscaffold_9:897132..897959 +

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Properties
Property NameValue
TranscriptId446129
TrackFilteredModels2
ProteinId446043
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:897132..897959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|446043gene_4887Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|446043mRNA_4887-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4887CDS_4887Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4887 ID=mRNA_4887|Name=jgi.p|Nanoce1779_2|446043|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
TAGGTCCTCAAAGATTGCTGGCTCCACCTCCTCTGCCTCCACCTTCTCCG
CCTCTACCCCCTCACCAAACATCTCTGAAAAATGTCGGAAAATGCTAAAG
CTCTTGCTTTCACTTCTAAACTTCCTTTGCCTTCTCCCCGCCTCCGTCCT
TTCCGTCGAATGTCCCCTTTGCCTCCACCTCCCTTATCTTCCTCCGCCTC
CTCCTGCTTCGCCATCCATCCCCCTCTCCTCACCGTCTCCCGAACCCTTC
CTGCGCAATCCACCTTCAGCATCTCTTCCCATCCATTTCCTCTTCCTCCC
CCTTCTCCGCTCTCTTCTCCTCAGCCTTCCCTCTCCTCCGCCTCCCCCTC
CTTCGCCTTTCCTCTTACTTTCCAGTGGACGTCCTCGATGGAAGTATTTT
CGAGAAGGCGATGCGACATGGTTCAACCCCTTCCACACCGAAGGTGTACT
TGCTGGGTTTCAAGTCTCTTGTCGACGGTCGGACATGGCAGGAGGCTGCA
ACCTTCACCAAAGCTGCGGCCGTAACACCAGCACCAGTACGAGCACTAGC
AGCTAGCATAAGCGACCGTGAAGGAGTTATGCCTATAGACGCGGAAGGTA
AAGCTGAGGCGGGAGTGGGACTATGGACAGGCTTGTTGGTTTCTGCTGGC
GTTCAAGGAAACGGAAAAGTAACCGTTGATGCCTAGTGCTGATGTGTCTG
CTCCACCTGATCCTACCCTTGATAAACAAGCAACACCATTATGCAACGTA
CCATGCATTGACTTTCCCTCGGCTCCTCACGTCCGCACTACAGCTTCCAC
TCCTCCCTCCTCATCTTCCCTGTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|446043

>mRNA_4887-protein ID=mRNA_4887-protein|Name=jgi.p|Nanoce1779_2|446043|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MLKLLLSLLNFLCLLPASVLSVECPLCLHLPYLPPPPPASPSIPLSSPSP
EPFLRNPPSASLPIHFLFLPLLRSLLLSLPSPPPPPPSPFLLLSSGRPRW
KYFREGDATWFNPFHTEGVLAGFQVSCRRSDMAGGCNLHQSCGRNTSTST
STSS*
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mRNA from alignment at scaffold_9:897132..897959+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4887 ID=mRNA_4887|Name=jgi.p|Nanoce1779_2|446043|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_9:897132..897959+ (Nannochloropsis oceanica)
TAGGTCCTCAAAGATTGCTGGCTCCACCTCCTCTGCCTCCACCTTCTCCG
CCTCTACCCCCTCACCAAACATCTCTGAAAAATGTCGGAAAATGCTAAAG
CTCTTGCTTTCACTTCTAAACTTCCTTTGCCTTCTCCCCGCCTCCGTCCT
TTCCGTCGAATGTCCCCTTTGCCTCCACCTCCCTTATCTTCCTCCGCCTC
CTCCTGCTTCGCCATCCATCCCCCTCTCCTCACCGTCTCCCGAACCCTTC
CTGCGCAATCCACCTTCAGCATCTCTTCCCATCCATTTCCTCTTCCTCCC
CCTTCTCCGCTCTCTTCTCCTCAGCCTTCCCTCTCCTCCGCCTCCCCCTC
CTTCGCCTTTCCTCTTACTTTCCAGTGGACGTCCTCGATGGAAGTATTTT
CGAGAAGGCGATGCGACATGGTTCAACCCCTTCCACACCGAAGGTGTACT
TGCTGGGTTTCAAGTCTCTTGTCGACGGTCGGACATGGCAGGAGGCTGCA
ACCTTCACCAAAGCTGCGGCCGTAACACCAGCACCAGTACGAGCACTAGC
AGCTAGCATAAGCGACCGTGAAGGAGTTATGCCTATAGACGCGGAAGGTA
AAGCTGAGGCGGGAGTGGGACTATGGACAGGCTTGTTGGTTTCTGCTGGC
GTTCAAGGAAACGGAAAAGTAACCGTTGATGCCTAGTGCTGATGTGTCTG
CTCCACCTGATCCTACCCTTGATAAACAAGCAACACCATTATGCAACGTA
CCATGCATTGACTTTCCCTCGGCTCCTCACGTCCGCACTACAGCTTCCAC
TCCTCCCTCCTCATCTTCCCTGTCCTCC
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Coding sequence (CDS) from alignment at scaffold_9:897132..897959+

>mRNA_4887 ID=mRNA_4887|Name=jgi.p|Nanoce1779_2|446043|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_9:897132..897959+ (Nannochloropsis oceanica)
ATGCTAAAGCTCTTGCTTTCACTTCTAAACTTCCTTTGCCTTCTCCCCGC
CTCCGTCCTTTCCGTCGAATGTCCCCTTTGCCTCCACCTCCCTTATCTTC
CTCCGCCTCCTCCTGCTTCGCCATCCATCCCCCTCTCCTCACCGTCTCCC
GAACCCTTCCTGCGCAATCCACCTTCAGCATCTCTTCCCATCCATTTCCT
CTTCCTCCCCCTTCTCCGCTCTCTTCTCCTCAGCCTTCCCTCTCCTCCGC
CTCCCCCTCCTTCGCCTTTCCTCTTACTTTCCAGTGGACGTCCTCGATGG
AAGTATTTTCGAGAAGGCGATGCGACATGGTTCAACCCCTTCCACACCGA
AGGTGTACTTGCTGGGTTTCAAGTCTCTTGTCGACGGTCGGACATGGCAG
GAGGCTGCAACCTTCACCAAAGCTGCGGCCGTAACACCAGCACCAGTACG
AGCACTAGCAGCTAG
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Synonyms
Publications