jgi.p|Nanoce1779_2|445985, mRNA_4886 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|445985
Unique NamemRNA_4886
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1245
Alignment locationscaffold_9:893668..895298 -

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Properties
Property NameValue
TranscriptId446071
TrackFilteredModels2
ProteinId445985
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:893668..895298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|445985gene_4886Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|445985mRNA_4886-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4886CDS_4886Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4886 ID=mRNA_4886|Name=jgi.p|Nanoce1779_2|445985|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
CATTGGTGCAATTCCATGCAATAGCACCCGCTCTTACTCCTCCCATCGGT
TGTATGGGGCGGAAACAAGGCTTCTCTCCCCAATCAATATTTGCATGGTT
CAGGACAAGGAAACGAGCACCCTGACACCAGGCTGCTTTCAACTCATAAC
CACCATAGGCAGAGACCACACACGCGTACACAAACACCACCTTTCATACC
CAACAATGCCTCAGCCAATTCCTGAGGTGTGTTGGCGCTCATAATGTTGG
CGCTCATAGAACAGTAGAAACGCCCTGGCGGACAGACCGTCCCGTCCTTC
TGGGTATGCGTCAAGATGCTAACAGATGGAGCATTGCGAGCGACAGCCCC
TGCAGTCCGGACCACACAAGAGGAAGAAGCAGAAGATCGTCAACGATTTT
TTGTACTATTCTTCTACATCCCTTCCTCTTGATATCCCCAGTCTTCCTCT
TAATCTCATATTAATCTACGCCCCATCATTGTAATGTCCACAGTTTTCTT
CTCACTTTCAGCGCCAAGCTACCATGTTCCGCCACTCTGCTCTCCTCTTT
GTGGCCCTCCTCTGCGTGGCGGATGCCCAATTTGAAGCCCTGACCGTGAA
CAAGAACAAGACCAAGACGGGCAACAAGCTACCGAAAGGTACCCACAACG
AGAAGACCAAACTGCGCAAGGTGGATGGCTTCAACCTCTGTACCCAGGAA
TATGATGCCTACATCGGCGCGGCAGGTATCGCTGGAACAGGCGCATTTTC
GTACCGCGTTTACCCTGGAGACTGCGATGAGGTGGATTCCACGACCGCGC
AAATCGGCTCCTTGGCCGCCACGTGCTCTGGCAACCCCTACGAGGGCGTG
ACCTTCACCATAAACACTCCAGCATCCACCGAAGGCTTCTCCAATCCTTT
GGATGAAGTTGGACCGTGCACTGACATAGCTGGCTGCACTTACGACCCCT
CTGGCGCGCCTCAATTTTTGGAAAGTCTAATTCCTGATATTGTTATCCCC
GATAATGTTACCAGTGACGAGGTGCAGGCGTTTGTGAATGACACGTGCCT
TGACATACTGGAAAACTTCGACCTTTTTAAACTTTCCGATTGCTCCGCCG
AGCTTCGCCTTAGCGGGGACCACCGCAAGAACAAGCATCCGGGAAGTACT
TTGTCTTTCGACTTTATGACCAACACCACTTTAGTCCCCGGTACGTTGTA
GCGACTATACATTTGAAAGCATGCGTGTCAAAGAGAGGGGATAGG
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protein sequence of jgi.p|Nanoce1779_2|445985

>mRNA_4886-protein ID=mRNA_4886-protein|Name=jgi.p|Nanoce1779_2|445985|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MFRHSALLFVALLCVADAQFEALTVNKNKTKTGNKLPKGTHNEKTKLRKV
DGFNLCTQEYDAYIGAAGIAGTGAFSYRVYPGDCDEVDSTTAQIGSLAAT
CSGNPYEGVTFTINTPASTEGFSNPLDEVGPCTDIAGCTYDPSGAPQFLE
SLIPDIVIPDNVTSDEVQAFVNDTCLDILENFDLFKLSDCSAELRLSGDH
RKNKHPGSTLSFDFMTNTTLVPGTL*
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mRNA from alignment at scaffold_9:893668..895298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4886 ID=mRNA_4886|Name=jgi.p|Nanoce1779_2|445985|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp|location=Sequence derived from alignment at scaffold_9:893668..895298- (Nannochloropsis oceanica)
CATTGGTGCAATTCCATGCAATAGCACCCGCTCTTACTCCTCCCATCGGT
TGTATGGGGCGGAAACAAGGCTTCTCTCCCCAATCAATATTTGCATGGTT
CAGGACAAGGAAACGAGCACCCTGACACCAGGCTGCTTTCAACTCATAAC
CACCATAGGCAGAGACCACACACGCGTACACAAACACCACCTTTCATACC
CAACAATGCCTCAGCCAATTCCTGAGGTGTGTTGGCGCTCATAATGTTGG
CGCTCATAGAACAGTAGAAACGCCCTGGCGGACAGACCGTCCCGTCCTTC
TGGGTATGCGTCAAGATGCTAACAGATGGAGCATTGCGAGCGACAGCCCC
TGCAGTCCGGACCACACAAGAGGAAGAAGCAGAAGATCGTCAACGATTTT
TTGTACTATTCTTCTACATCCCTTCCTCTTGATATCCCCAGTCTTCCTCT
TAATCTCATATTAATCTACGCCCCATCATTGTAATGTCCACAGTTTTCTT
CTCACTTTCAGCGCCAAGCTACCATGTTCCGCCACTCTGCTCTCCTCTTT
GTGGCCCTCCTCTGCGTGGCGGGTAAGTAAGTGGAGGAAGATGCTGTGAT
GGACTTACTTGTAAGAGCAAAGGCAACATGCTCGTAAAATCTCCTCAAAA
TATGTCGTGCAGAGCTGCTTCGCGTGTCCTTTTGTCAAGTTCCTTTGGCT
TACTATTTATGGCGCAAGTCTAAGTAGGCCGATCGACATTGTGTCTTACA
GACATCATCCCCTCATGGGCACGGTCAAGGCTATTGAACTAGGATAATCC
ATCACAACCACACCACACATGCACTCATTGCAATAGATGCCCAATTTGAA
GCCCTGACCGTGAACAAGAACAAGACCAAGACGGGCAACAAGCTACCGAA
AGGTACCCACAACGAGAAGACCAAACTGCGCAAGGTGGATGGCTTCAACC
TCTGTACCCAGGAATATGATGCCTACATCGGCGCGGCAGGTATCGCTGGA
ACAGGCGCATTTTCGTACCGCGTTTACCCTGGAGACTGCGATGAGGTACG
CCAGAATGACGAAAGCATCTTTCCCAGACCTTATATATCTATTCACGTTG
TATGGTACCGGACAGAAAGGTGCCTGGCCCTTAACTCACCGGAGTACATC
TCACAATGAATTATCAGGTGGATTCCACGACCGCGCAAATCGGCTCCTTG
GCCGCCACGTGCTCTGGCAACCCCTACGAGGGCGTGACCTTCACCATAAA
CACTCCAGCATCCACCGAAGGCTTCTCCAATCCTTTGGATGAAGTTGGAC
CGTGCACTGACATAGCTGGCTGCACTTACGACCCCTCTGGCGCGCCTCAA
TTTTTGGAAAGTCTAATTCCTGATATTGTTATCCCCGATAATGTTACCAG
TGACGAGGTGCAGGCGTTTGTGAATGACACGTGCCTTGACATACTGGAAA
ACTTCGACCTTTTTAAACTTTCCGATTGCTCCGCCGAGCTTCGCCTTAGC
GGGGACCACCGCAAGAACAAGCATCCGGGAAGTACTTTGTCTTTCGACTT
TATGACCAACACCACTTTAGTCCCCGGTACGTTGTAGCGACTATACATTT
GAAAGCATGCGTGTCAAAGAGAGGGGATAGG
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Coding sequence (CDS) from alignment at scaffold_9:893668..895298-

>mRNA_4886 ID=mRNA_4886|Name=jgi.p|Nanoce1779_2|445985|organism=Nannochloropsis oceanica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_9:893668..895298- (Nannochloropsis oceanica)
GTGGATTCCACGACCGCGCAAATCGGCTCCTTGGCCGCCACGTGCTCTGG
CAACCCCTACGAGGGCGTGACCTTCACCATAAACACTCCAGCATCCACCG
AAGGCTTCTCCAATCCTTTGGATGAAGTTGGACCGTGCACTGACATAGCT
GGCTGCACTTACGACCCCTCTGGCGCGCCTCAATTTTTGGAAAGTCTAAT
TCCTGATATTGTTATCCCCGATAATGTTACCAGTGACGAGGTGCAGGCGT
TTGTGAATGACACGTGCCTTGACATACTGGAAAACTTCGACCTTTTTAAA
CTTTCCGATTGCTCCGCCGAGCTTCGCCTTAGCGGGGACCACCGCAAGAA
CAAGCATCCGGGAAGTACTTTGTCTTTCGACTTTATGACCAACACCACTT
TAGTCCCCGGTACGTTGTAGATGCCCAATTTGAAGCCCTGACCGTGAACA
AGAACAAGACCAAGACGGGCAACAAGCTACCGAAAGGTACCCACAACGAG
AAGACCAAACTGCGCAAGGTGGATGGCTTCAACCTCTGTACCCAGGAATA
TGATGCCTACATCGGCGCGGCAGGTATCGCTGGAACAGGCGCATTTTCGT
ACCGCGTTTACCCTGGAGACTGCGATGAGATGTTCCGCCACTCTGCTCTC
CTCTTTGTGGCCCTCCTCTGCGTGGCGGGTGGATTCCACGACCGCGCAAA
TCGGCTCCTTGGCCGCCACGTGCTCTGGCAACCCCTACGAGGGCGTGACC
TTCACCATAAACACTCCAGCATCCACCGAAGGCTTCTCCAATCCTTTGGA
TGAAGTTGGACCGTGCACTGACATAGCTGGCTGCACTTACGACCCCTCTG
GCGCGCCTCAATTTTTGGAAAGTCTAATTCCTGATATTGTTATCCCCGAT
AATGTTACCAGTGACGAGGTGCAGGCGTTTGTGAATGACACGTGCCTTGA
CATACTGGAAAACTTCGACCTTTTTAAACTTTCCGATTGCTCCGCCGAGC
TTCGCCTTAGCGGGGACCACCGCAAGAACAAGCATCCGGGAAGTACTTTG
TCTTTCGACTTTATGACCAACACCACTTTAGTCCCCGGTACGTTGTAGAT
GCCCAATTTGAAGCCCTGACCGTGAACAAGAACAAGACCAAGACGGGCAA
CAAGCTACCGAAAGGTACCCACAACGAGAAGACCAAACTGCGCAAGGTGG
ATGGCTTCAACCTCTGTACCCAGGAATATGATGCCTACATCGGCGCGGCA
GGTATCGCTGGAACAGGCGCATTTTCGTACCGCGTTTACCCTGGAGACTG
CGATGAGATGTTCCGCCACTCTGCTCTCCTCTTTGTGGCCCTCCTCTGCG
TGGCGGGTGGATTCCACGACCGCGCAAATCGGCTCCTTGGCCGCCACGTG
CTCTGGCAACCCCTACGAGGGCGTGACCTTCACCATAAACACTCCAGCAT
CCACCGAAGGCTTCTCCAATCCTTTGGATGAAGTTGGACCGTGCACTGAC
ATAGCTGGCTGCACTTACGACCCCTCTGGCGCGCCTCAATTTTTGGAAAG
TCTAATTCCTGATATTGTTATCCCCGATAATGTTACCAGTGACGAGGTGC
AGGCGTTTGTGAATGACACGTGCCTTGACATACTGGAAAACTTCGACCTT
TTTAAACTTTCCGATTGCTCCGCCGAGCTTCGCCTTAGCGGGGACCACCG
CAAGAACAAGCATCCGGGAAGTACTTTGTCTTTCGACTTTATGACCAACA
CCACTTTAGTCCCCGGTACGTTGTAGATGCCCAATTTGAAGCCCTGACCG
TGAACAAGAACAAGACCAAGACGGGCAACAAGCTACCGAAAGGTACCCAC
AACGAGAAGACCAAACTGCGCAAGGTGGATGGCTTCAACCTCTGTACCCA
GGAATATGATGCCTACATCGGCGCGGCAGGTATCGCTGGAACAGGCGCAT
TTTCGTACCGCGTTTACCCTGGAGACTGCGATGAGATGTTCCGCCACTCT
GCTCTCCTCTTTGTGGCCCTCCTCTGCGTGGCGG
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Synonyms
Publications