jgi.p|Nanoce1779_2|445770, mRNA_4882 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|445770
Unique NamemRNA_4882
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length798
Alignment locationscaffold_9:879872..880721 +

Link to JBrowse

Properties
Property NameValue
TranscriptId445856
TrackFilteredModels2
ProteinId445770
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:879872..880721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|445770gene_4882Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|445770mRNA_4882-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4882CDS_4882Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4882 ID=mRNA_4882|Name=jgi.p|Nanoce1779_2|445770|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
AGCAGAAGGGAAAAAAATAGAGAAGGAATAATCCTTCACAGAAGCAGAGA
CGCAGAGAAGAGCAAGAGATGGCAAGAGAAGCTTGATGTGGGCATTCCAG
CTGGTGATGGATCAAGATCGTCCTGATGGGATATGTCGTCTCATTCCTTC
TTTCGCTTTCCTCTTATTGCATTTGGACATGGCGTACGACTGACTTGATG
TGTGTAAATACCTCTCTCTCCCTCTCTCTTTCTCTCTGTCACACTATACA
CACTCACATCATCTCTCTTGTCTCTCTATCTATGAACCCCTCACACTCAT
CACTCTCATCACTCATTCTATGGCCCGTTCCGATCCCTTCGAAACAACTT
CCCCATGCCATTTCAGTCATCCCCCCCGCTATTAAATCACACACCTTCTC
TGAGCCCTTCTTCTTCCCTCCTCATCCCTCATTCCTTCCTCTTGCTCGTG
TGTGCATCATTCTCCTACTTCTACTCCTTCTCCTCTTCCCTCCTCCTCCT
CCTCCTCCTCCCCCTCTTTCTCGCAAAGACCCGCTTGATCTCTCCTCCAA
TGTTGCGCTCACGATCGATCCCCCACCCGGCCGTCAAAATCATACCTGTC
AAGATTGACTTACAACCCCAAAATATTAAGCAATTAGTAGACACCACACA
CATTCCATTTTCCTTCCTCCTTTTCCTTTGCTGGCTGTGAACGCGTGTAC
TCGCCCTACCACGCCCCCATATCGTGAATTCACAACGCATTATTTGAAGT
CAGATTCAAAGATATCGCGGCGGTGGCGGTGTGTGAGTGTGTGAGTGT
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protein sequence of jgi.p|Nanoce1779_2|445770

>mRNA_4882-protein ID=mRNA_4882-protein|Name=jgi.p|Nanoce1779_2|445770|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MGYVVSFLLSLSSYCIWTWRTTDLMCVNTSLSLSLSLCHTIHTHIISLVS
LSMNPSHSSLSSLILWPVPIPSKQLPHAISVIPPAIKSHTFSEPFFFPPH
PSFLPLARVCIILLLLLLLLFPPPPPPPPPLSRKDPLDLSSNVALTIDPP
PGRQNHTCQD*
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mRNA from alignment at scaffold_9:879872..880721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4882 ID=mRNA_4882|Name=jgi.p|Nanoce1779_2|445770|organism=Nannochloropsis oceanica|type=mRNA|length=850bp|location=Sequence derived from alignment at scaffold_9:879872..880721+ (Nannochloropsis oceanica)
AGCAGAAGGGAAAAAAATAGAGAAGGAATAATCCTTCACAGAAGCAGAGA
CGCAGAGAAGAGCAAGAGATGGCAAGAGAAGCTTGATGTGGGCATTCCAG
CTGGTGATGGATCAAGATCGTCCTGATGGGATATGTCGTCTCATTCCTTC
TTTCGCTTTCCTCTTATTGCATTTGGACATGGCGTACGACTGACTTGATG
TGTGTAAATACCTCTCTCTCCCTCTTTCTTTCTCTCTCTCTCTCCGTCTC
CCTCCCTCCCTCTCTCTCTCTCCCTCTCTCTTTCTCTCTGTCACACTATA
CACACTCACATCATCTCTCTTGTCTCTCTATCTATGAACCCCTCACACTC
ATCACTCTCATCACTCATTCTATGGCCCGTTCCGATCCCTTCGAAACAAC
TTCCCCATGCCATTTCAGTCATCCCCCCCGCTATTAAATCACACACCTTC
TCTGAGCCCTTCTTCTTCCCTCCTCATCCCTCATTCCTTCCTCTTGCTCG
TGTGTGCATCATTCTCCTACTTCTACTCCTTCTCCTCTTCCCTCCTCCTC
CTCCTCCTCCTCCCCCTCTTTCTCGCAAAGACCCGCTTGATCTCTCCTCC
AATGTTGCGCTCACGATCGATCCCCCACCCGGCCGTCAAAATCATACCTG
TCAAGATTGACTTACAACCCCAAAATATTAAGCAATTAGTAGACACCACA
CACATTCCATTTTCCTTCCTCCTTTTCCTTTGCTGGCTGTGAACGCGTGT
ACTCGCCCTACCACGCCCCCATATCGTGAATTCACAACGCATTATTTGAA
GTCAGATTCAAAGATATCGCGGCGGTGGCGGTGTGTGAGTGTGTGAGTGT
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Coding sequence (CDS) from alignment at scaffold_9:879872..880721+

>mRNA_4882 ID=mRNA_4882|Name=jgi.p|Nanoce1779_2|445770|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_9:879872..880721+ (Nannochloropsis oceanica)
ATGGGATATGTCGTCTCATTCCTTCTTTCGCTTTCCTCTTATTGCATTTG
GACATGGCGTACGACTGACTTGATGTGTGTAAATACCTCTCTCTCCCTCT
CTCTTTCTCTCTGTCACACTATACACACTCACATCATCTCTCTTGTCTCT
CTATCTATGAACCCCTCACACTCATCACTCTCATCACTCATTCTATGGCC
CGTTCCGATCCCTTCGAAACAACTTCCCCATGCCATTTCAGTCATCCCCC
CCGCTATTAAATCACACACCTTCTCTGAGCCCTTCTTCTTCCCTCCTCAT
CCCTCATTCCTTCCTCTTGCTCGTGTGTGCATCATTCTCCTACTTCTACT
CCTTCTCCTCTTCCCTCCTCCTCCTCCTCCTCCTCCCCCTCTTTCTCGCA
AAGACCCGCTTGATCTCTCCTCCAATGTTGCGCTCACGATCGATCCCCCA
CCCGGCCGTCAAAATCATACCTGTCAAGATTGAATGGGATATGTCGTCTC
ATTCCTTCTTTCGCTTTCCTCTTATTGCATTTGGACATGGCGTACGACTG
ACTTGATGTGTGTAAATACCTCTCTCTCCCTCTCTCTTTCTCTCTGTCAC
ACTATACACACTCACATCATCTCTCTTGTCTCTCTATCTATGAACCCCTC
ACACTCATCACTCTCATCACTCATTCTATGGCCCGTTCCGATCCCTTCGA
AACAACTTCCCCATGCCATTTCAGTCATCCCCCCCGCTATTAAATCACAC
ACCTTCTCTGAGCCCTTCTTCTTCCCTCCTCATCCCTCATTCCTTCCTCT
TGCTCGTGTGTGCATCATTCTCCTACTTCTACTCCTTCTCCTCTTCCCTC
CTCCTCCTCCTCCTCCTCCCCCTCTTTCTCGCAAAGACCCGCTTGATCTC
TCCTCCAATGTTGCGCTCACGATCGATCCCCCACCCGGCCGTCAAAATCA
TACCTGTCAAGATTGA
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Synonyms
Publications