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Properties
| Property Name | Value |
|---|
| TranscriptId | 670686 |
| Track | FilteredModels2 |
| ProteinId | 670600 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:866680..868778 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4880 ID=mRNA_4880|Name=jgi.p|Nanoce1779_2|670600|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp
CAGCTTGCACGGCCACCTTCCGCCATGACGACCACAAAATTTGTCAGAAG
ACATTTCCGTTTCTGGCACCACCACCCGCCCTCCCTACTCCTTCTCCTTC
TCCTCATGGCGTCCCTCCTCTTGCGCTCCGCCTCATTTGCCCTTGGGACC
AAAACCACCCGCCCCTGGATGTCTGCCGTGCGTGATGCCTTAGCGTCGCC
GCAGAGGGCGCTGCAAAGCCAAGCCCTTGTGCAGTCGTTGCTAGATAAGG
GTCCCGTGCCCGGTCCTCAGCGCGAATTCCTGATTAATGGTTGGCGGTGG
CACTCTAGGAGCGTCTTGCGGGATGTGCGGCGTTTTAAAGAGGTGGCTAA
GAGGGAGAGGCGGGAGTTGATGACGGGGGTGGAGGGACCGAGCCGCCTCC
CCGCCTGCTACGATTTCTTTTGGAGCTTCTCCTGGGTGGCCCTCCTCAAG
ATTGAGAGCGATATCTTCTACCCTTTCCTGAGGAAGACCCTTCCCAAGGA
CCTGAGGCCCGTCTTGGACGATCTGGAGGAGCAGGGACGCCAGGTGGCCA
CCCTCGGTCAGCGCCTCGGCCTCGTCCTCCAAGCCTTCCGCGACCCCTCG
TCTTCCCCCTCCTCCCCCCCGCCCTCCCTCCCTTCCTCCTCCTCCTCCCA
TTTGGCCCGGCTCGATGATGCCTTGGCCCTGGCGGGGGAGCTGGAGGTGA
GGGCCGAGGGGCTGATTGACCAGCAGGAGGAGGTGTTGGTGCCAGTGGTG
GCGGCGTATCTGACGGGAAGGGAGCAGAAAAAATTCAATAACAAGGTCAT
CGCATCGCTCGGTATCTTCAACAGCCGCGTGCATTTGGTGAGCATGGCCG
AGGCCGTCCGAGGCGACGCAGTGGAGGAAATGAAGTTCAAGGGTCAGATT
CCTGGCATTGCACAAGCGCTCTTAGGCCGGTGGAGGAAGAGGCTCTACCG
GCCTCTGGCAGTGTGCTTGGAGTAAGGCCAGAGGGGGAAGAGAGGACAGG
AGAACGTGTGTGTGTATATATATATGAGAAGAGGAAGTAGAGTTGGTACG
GTGATGGGCGTTTCTCTTTGCCTTCCCTGGGGAATGATGT back to topprotein sequence of jgi.p|Nanoce1779_2|670600 >mRNA_4880-protein ID=mRNA_4880-protein|Name=jgi.p|Nanoce1779_2|670600|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MTTTKFVRRHFRFWHHHPPSLLLLLLLMASLLLRSASFALGTKTTRPWMS
AVRDALASPQRALQSQALVQSLLDKGPVPGPQREFLINGWRWHSRSVLRD
VRRFKEVAKRERRELMTGVEGPSRLPACYDFFWSFSWVALLKIESDIFYP
FLRKTLPKDLRPVLDDLEEQGRQVATLGQRLGLVLQAFRDPSSSPSSPPP
SLPSSSSSHLARLDDALALAGELEVRAEGLIDQQEEVLVPVVAAYLTGRE
QKKFNNKVIASLGIFNSRVHLVSMAEAVRGDAVEEMKFKGQIPGIAQALL
GRWRKRLYRPLAVCLE* back to topmRNA from alignment at scaffold_9:866680..868778- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4880 ID=mRNA_4880|Name=jgi.p|Nanoce1779_2|670600|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp|location=Sequence derived from alignment at scaffold_9:866680..868778- (Nannochloropsis oceanica)
CAGCTTGCACGGCCACCTTCCGCCATGACGACCACAAAATTTGTCAGAAG
ACATTTCCGTTTCTGGCACCACCACCCGCCCTCCCTACTCCTTCTCCTTC
TCCTCATGGCGTCCCTCCTCTTGCGCTCCGCCTCATTTGCCCTTGGGACC
AAAACCACCCGCCCCTGGATGTCTGCCGTGCGTGATGCCTTAGCGTCGCC
GCAGAGGGCGCTGCAAAGCCAAGCCCTTGTGCAGTCGTTGCTAGGTCCGT
CGTCGTGTGATATAGTCATGTGGGGGAGTTAGGAAAGCTTTCCTGGGAGA
TGGTACGCGGGAGTGCACCCCTGCCTCCCTCCCTCCGCACCGTCTTCGTC
ACCCTTTCCCTCCTCACTCACTTGCATTTTCGCCCTTCTTGACGATCGTT
GGAGCACCATATCCTCGTCTAGCCGGGAGCCCTCCTTCCCTGCACACACA
CTCACCTTCCTCCCTGCCTCCCTCCCTCGCTCCCTTCTTATCAGATAAGG
GTCCCGTGCCCGGTCCTCAGCGCGAATTCCTGATTAATGGTTGGCGGTGG
CACTCTAGGAGCGTCTTGCGGGATGTGCGGCGTTTTAAAGAGGTGGCTAA
GAGGGAGAGGCGGGAGTTGATGACGGGGGTGGAGGGACCGAGGTAGGGAA
TGAGGGAAAGACGAGAGGCGAGGGAGGGGAGGGAGGGAGAGGGGAGAGAG
GGGAAGAAGGGAGTGAAGGAGAAAAAATTACAGGAGAGGGAGGAAACCAC
TATTAACGGATTGATGGGAAGTTATTTTTGCAATGACATGGGTTGAACCT
CACCCTCCCTTCTTTCCCTCTCTTTCTCTTTTTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCACTCACTCTTGTCTCTCTCTCGCTCTCTCGCCCTCAGCCGCC
TCCCCGCCTGCTACGATTTCTTTTGGAGCTTCTCCTGGGTGGCCCTCCTC
AAGATTGAGAGCGATATCTTCTACCCTTTCCTGAGGAAGACCCTTCCCAA
GGACCTGAGGCCCGTCTTGGACGATCTGGAGGAGCAGGGACGCCAGGTAC
ACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCCCCCCTCCTTCCAACCCACCTGTTTTGCGTATCTTAACTTTTCAAGCA
CGGTACTTACATACTAGCCTGCCCTCCCTCCCTTTCTTCATCCTTCGACT
CCCCTCCCAGGTGGCCACCCTCGGTCAGCGCCTCGGCCTCGTCCTCCAAG
CCTTCCGCGACCCCTCGTCTTCCCCCTCCTCCCCCCCGCCCTCCCTCCCT
TCCTCCTCCTCCTCCCATTTGGCCCGGCTCGATGATGCCTTGGCCCTGGC
GGGGGAGCTGGAGGTGAGGGCCGAGGGGCTGATTGACCAGCAGGAGGAGG
TGTTGGTGCCAGTGGTGGCGGCGTATCTGACGGGAAGGGAGCAGAAAAAA
TTCAATAACAAGGGTAAGGAGAAGAGGAGCATTGTTTCTGTTGTTGTTAC
TATCTTGGTCATCATTATTGTCACGAGTAGTTCTGCTGTGGTCGTAGCAG
TAGTGAGAGTAGTGGTAGAAATACAGTCACCGTGACGAAAAATGGAGCTT
TCGTTCCTCCTCCCCTGTCTCCTTGACGTGTCGATTACTCTTACCCTCCC
TCCCTCCCTCCCTCCCTCCACCCCACCCTTTCCTGAGCCTCGTCTTGTTT
TCAAAGGAGAAAAATGTGGCAGTCTCACTCCCCCCCCCCTCCTCCTGTTT
CCCAGTCATCGCATCGCTCGGTATCTTCAACAGCCGCGTGCATTTGGTGA
GCATGGCCGAGGCCGTCCGAGGCGACGCAGTGGAGGAAATGAAGTTCAAG
GGTCAGATTCCTGGCATTGCACAAGCGCTCTTAGGCCGGTGGAGGAAGAG
GCTCTACCGGCCTCTGGCAGTGTGCTTGGAGTAAGGCCAGAGGGGGAAGA
GAGGACAGGAGAACGTGTGTGTGTATATATATATGAGAAGAGGAAGTAGA
GTTGGTACGGTGATGGGCGTTTCTCTTTGCCTTCCCTGGGGAATGATGT back to topCoding sequence (CDS) from alignment at scaffold_9:866680..868778- >mRNA_4880 ID=mRNA_4880|Name=jgi.p|Nanoce1779_2|670600|organism=Nannochloropsis oceanica|type=CDS|length=4755bp|location=Sequence derived from alignment at scaffold_9:866680..868778- (Nannochloropsis oceanica)
TCATCGCATCGCTCGGTATCTTCAACAGCCGCGTGCATTTGGTGAGCATG
GCCGAGGCCGTCCGAGGCGACGCAGTGGAGGAAATGAAGTTCAAGGGTCA
GATTCCTGGCATTGCACAAGCGCTCTTAGGCCGGTGGAGGAAGAGGCTCT
ACCGGCCTCTGGCAGTGTGCTTGGAGTAAGTGGCCACCCTCGGTCAGCGC
CTCGGCCTCGTCCTCCAAGCCTTCCGCGACCCCTCGTCTTCCCCCTCCTC
CCCCCCGCCCTCCCTCCCTTCCTCCTCCTCCTCCCATTTGGCCCGGCTCG
ATGATGCCTTGGCCCTGGCGGGGGAGCTGGAGGTGAGGGCCGAGGGGCTG
ATTGACCAGCAGGAGGAGGTGTTGGTGCCAGTGGTGGCGGCGTATCTGAC
GGGAAGGGAGCAGAAAAAATTCAATAACAAGGCCGCCTCCCCGCCTGCTA
CGATTTCTTTTGGAGCTTCTCCTGGGTGGCCCTCCTCAAGATTGAGAGCG
ATATCTTCTACCCTTTCCTGAGGAAGACCCTTCCCAAGGACCTGAGGCCC
GTCTTGGACGATCTGGAGGAGCAGGGACGCCAGATAAGGGTCCCGTGCCC
GGTCCTCAGCGCGAATTCCTGATTAATGGTTGGCGGTGGCACTCTAGGAG
CGTCTTGCGGGATGTGCGGCGTTTTAAAGAGGTGGCTAAGAGGGAGAGGC
GGGAGTTGATGACGGGGGTGGAGGGACCGAGATGACGACCACAAAATTTG
TCAGAAGACATTTCCGTTTCTGGCACCACCACCCGCCCTCCCTACTCCTT
CTCCTTCTCCTCATGGCGTCCCTCCTCTTGCGCTCCGCCTCATTTGCCCT
TGGGACCAAAACCACCCGCCCCTGGATGTCTGCCGTGCGTGATGCCTTAG
CGTCGCCGCAGAGGGCGCTGCAAAGCCAAGCCCTTGTGCAGTCGTTGCTA
GTCATCGCATCGCTCGGTATCTTCAACAGCCGCGTGCATTTGGTGAGCAT
GGCCGAGGCCGTCCGAGGCGACGCAGTGGAGGAAATGAAGTTCAAGGGTC
AGATTCCTGGCATTGCACAAGCGCTCTTAGGCCGGTGGAGGAAGAGGCTC
TACCGGCCTCTGGCAGTGTGCTTGGAGTAAGTGGCCACCCTCGGTCAGCG
CCTCGGCCTCGTCCTCCAAGCCTTCCGCGACCCCTCGTCTTCCCCCTCCT
CCCCCCCGCCCTCCCTCCCTTCCTCCTCCTCCTCCCATTTGGCCCGGCTC
GATGATGCCTTGGCCCTGGCGGGGGAGCTGGAGGTGAGGGCCGAGGGGCT
GATTGACCAGCAGGAGGAGGTGTTGGTGCCAGTGGTGGCGGCGTATCTGA
CGGGAAGGGAGCAGAAAAAATTCAATAACAAGGCCGCCTCCCCGCCTGCT
ACGATTTCTTTTGGAGCTTCTCCTGGGTGGCCCTCCTCAAGATTGAGAGC
GATATCTTCTACCCTTTCCTGAGGAAGACCCTTCCCAAGGACCTGAGGCC
CGTCTTGGACGATCTGGAGGAGCAGGGACGCCAGATAAGGGTCCCGTGCC
CGGTCCTCAGCGCGAATTCCTGATTAATGGTTGGCGGTGGCACTCTAGGA
GCGTCTTGCGGGATGTGCGGCGTTTTAAAGAGGTGGCTAAGAGGGAGAGG
CGGGAGTTGATGACGGGGGTGGAGGGACCGAGATGACGACCACAAAATTT
GTCAGAAGACATTTCCGTTTCTGGCACCACCACCCGCCCTCCCTACTCCT
TCTCCTTCTCCTCATGGCGTCCCTCCTCTTGCGCTCCGCCTCATTTGCCC
TTGGGACCAAAACCACCCGCCCCTGGATGTCTGCCGTGCGTGATGCCTTA
GCGTCGCCGCAGAGGGCGCTGCAAAGCCAAGCCCTTGTGCAGTCGTTGCT
AGTCATCGCATCGCTCGGTATCTTCAACAGCCGCGTGCATTTGGTGAGCA
TGGCCGAGGCCGTCCGAGGCGACGCAGTGGAGGAAATGAAGTTCAAGGGT
CAGATTCCTGGCATTGCACAAGCGCTCTTAGGCCGGTGGAGGAAGAGGCT
CTACCGGCCTCTGGCAGTGTGCTTGGAGTAAGTGGCCACCCTCGGTCAGC
GCCTCGGCCTCGTCCTCCAAGCCTTCCGCGACCCCTCGTCTTCCCCCTCC
TCCCCCCCGCCCTCCCTCCCTTCCTCCTCCTCCTCCCATTTGGCCCGGCT
CGATGATGCCTTGGCCCTGGCGGGGGAGCTGGAGGTGAGGGCCGAGGGGC
TGATTGACCAGCAGGAGGAGGTGTTGGTGCCAGTGGTGGCGGCGTATCTG
ACGGGAAGGGAGCAGAAAAAATTCAATAACAAGGCCGCCTCCCCGCCTGC
TACGATTTCTTTTGGAGCTTCTCCTGGGTGGCCCTCCTCAAGATTGAGAG
CGATATCTTCTACCCTTTCCTGAGGAAGACCCTTCCCAAGGACCTGAGGC
CCGTCTTGGACGATCTGGAGGAGCAGGGACGCCAGATAAGGGTCCCGTGC
CCGGTCCTCAGCGCGAATTCCTGATTAATGGTTGGCGGTGGCACTCTAGG
AGCGTCTTGCGGGATGTGCGGCGTTTTAAAGAGGTGGCTAAGAGGGAGAG
GCGGGAGTTGATGACGGGGGTGGAGGGACCGAGATGACGACCACAAAATT
TGTCAGAAGACATTTCCGTTTCTGGCACCACCACCCGCCCTCCCTACTCC
TTCTCCTTCTCCTCATGGCGTCCCTCCTCTTGCGCTCCGCCTCATTTGCC
CTTGGGACCAAAACCACCCGCCCCTGGATGTCTGCCGTGCGTGATGCCTT
AGCGTCGCCGCAGAGGGCGCTGCAAAGCCAAGCCCTTGTGCAGTCGTTGC
TAGTCATCGCATCGCTCGGTATCTTCAACAGCCGCGTGCATTTGGTGAGC
ATGGCCGAGGCCGTCCGAGGCGACGCAGTGGAGGAAATGAAGTTCAAGGG
TCAGATTCCTGGCATTGCACAAGCGCTCTTAGGCCGGTGGAGGAAGAGGC
TCTACCGGCCTCTGGCAGTGTGCTTGGAGTAAGTGGCCACCCTCGGTCAG
CGCCTCGGCCTCGTCCTCCAAGCCTTCCGCGACCCCTCGTCTTCCCCCTC
CTCCCCCCCGCCCTCCCTCCCTTCCTCCTCCTCCTCCCATTTGGCCCGGC
TCGATGATGCCTTGGCCCTGGCGGGGGAGCTGGAGGTGAGGGCCGAGGGG
CTGATTGACCAGCAGGAGGAGGTGTTGGTGCCAGTGGTGGCGGCGTATCT
GACGGGAAGGGAGCAGAAAAAATTCAATAACAAGGCCGCCTCCCCGCCTG
CTACGATTTCTTTTGGAGCTTCTCCTGGGTGGCCCTCCTCAAGATTGAGA
GCGATATCTTCTACCCTTTCCTGAGGAAGACCCTTCCCAAGGACCTGAGG
CCCGTCTTGGACGATCTGGAGGAGCAGGGACGCCAGATAAGGGTCCCGTG
CCCGGTCCTCAGCGCGAATTCCTGATTAATGGTTGGCGGTGGCACTCTAG
GAGCGTCTTGCGGGATGTGCGGCGTTTTAAAGAGGTGGCTAAGAGGGAGA
GGCGGGAGTTGATGACGGGGGTGGAGGGACCGAGATGACGACCACAAAAT
TTGTCAGAAGACATTTCCGTTTCTGGCACCACCACCCGCCCTCCCTACTC
CTTCTCCTTCTCCTCATGGCGTCCCTCCTCTTGCGCTCCGCCTCATTTGC
CCTTGGGACCAAAACCACCCGCCCCTGGATGTCTGCCGTGCGTGATGCCT
TAGCGTCGCCGCAGAGGGCGCTGCAAAGCCAAGCCCTTGTGCAGTCGTTG
CTAGTCATCGCATCGCTCGGTATCTTCAACAGCCGCGTGCATTTGGTGAG
CATGGCCGAGGCCGTCCGAGGCGACGCAGTGGAGGAAATGAAGTTCAAGG
GTCAGATTCCTGGCATTGCACAAGCGCTCTTAGGCCGGTGGAGGAAGAGG
CTCTACCGGCCTCTGGCAGTGTGCTTGGAGTAAGTGGCCACCCTCGGTCA
GCGCCTCGGCCTCGTCCTCCAAGCCTTCCGCGACCCCTCGTCTTCCCCCT
CCTCCCCCCCGCCCTCCCTCCCTTCCTCCTCCTCCTCCCATTTGGCCCGG
CTCGATGATGCCTTGGCCCTGGCGGGGGAGCTGGAGGTGAGGGCCGAGGG
GCTGATTGACCAGCAGGAGGAGGTGTTGGTGCCAGTGGTGGCGGCGTATC
TGACGGGAAGGGAGCAGAAAAAATTCAATAACAAGGCCGCCTCCCCGCCT
GCTACGATTTCTTTTGGAGCTTCTCCTGGGTGGCCCTCCTCAAGATTGAG
AGCGATATCTTCTACCCTTTCCTGAGGAAGACCCTTCCCAAGGACCTGAG
GCCCGTCTTGGACGATCTGGAGGAGCAGGGACGCCAGATAAGGGTCCCGT
GCCCGGTCCTCAGCGCGAATTCCTGATTAATGGTTGGCGGTGGCACTCTA
GGAGCGTCTTGCGGGATGTGCGGCGTTTTAAAGAGGTGGCTAAGAGGGAG
AGGCGGGAGTTGATGACGGGGGTGGAGGGACCGAGATGACGACCACAAAA
TTTGTCAGAAGACATTTCCGTTTCTGGCACCACCACCCGCCCTCCCTACT
CCTTCTCCTTCTCCTCATGGCGTCCCTCCTCTTGCGCTCCGCCTCATTTG
CCCTTGGGACCAAAACCACCCGCCCCTGGATGTCTGCCGTGCGTGATGCC
TTAGCGTCGCCGCAGAGGGCGCTGCAAAGCCAAGCCCTTGTGCAGTCGTT
GCTAG back to top
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