jgi.p|Nanoce1779_2|445615, mRNA_4879 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|445615
Unique NamemRNA_4879
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length765
Alignment locationscaffold_9:865442..866206 -

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Properties
Property NameValue
TranscriptId445701
TrackFilteredModels2
ProteinId445615
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:865442..866206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|445615gene_4879Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|445615mRNA_4879-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4879CDS_4879Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4879 ID=mRNA_4879|Name=jgi.p|Nanoce1779_2|445615|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
CTCTTCTTCTTCCTCTTCTCGTTCTTCGTTCCGCTTATGAATCGATTGTG
GTGTATCCTCTTGGAGTGTGGATGAAGGGGGCTATAGCTATGTGTATATA
TGTATGTGCAGGTTCCTTATAGGCTTGTCATTGTTGCCACCCCTCTGTCT
TTCTACTTCGAGTCTCTTGCTGTTGTTGCTGTCTCTCTTGTTGGTCTCTT
ATCCATCATGAAATGTCTTTTGTGCACTGGTCCCTTCGGACGTCTCGTTT
GTCCTCTTTTCGTTTCTTCTGCCCTGGTGCTGCTGCCATTGACTTCTTGC
TCGTTCCTCGTTGCTCTCTCCCTTTCCCTCACTCTCCGTCTCTCTTGCTC
CCTCTCTCTCTCCGTCTCACTCCCTTCTCTCACTCTCTCCCTCGTCCTTC
CCCTCCCCTCTCTTTCCTCCCCGATGAAGGACACGGGGACTTCTCTTAAA
TTCCACCCTCCGTTTGGGCGGCTTATTTTTAGGGCTCTGGTACGTGTTCA
TGTGGTTGGATATGTGCGTAATAAATGCTCACTCCATTTATCCATTTATG
AAACGCCCTCTCCTACTCTCGTTTCAAATTGTGCCCCCTGCGTCTCAGCC
ATTCCAGCCTCCTTCTCTTCCTCGGTCCCTTCCCCCCCCCCTTCGTCTGT
CCTCTTTCACCGTCTTTCATCTTTCTAGCTGCCATTGTCATCCTTCAGGG
CATGCACTTGAATGTACACCACAAACTCTCTTTTATTATTATTATCTATT
CATGCCCAAGTCATG
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protein sequence of jgi.p|Nanoce1779_2|445615

>mRNA_4879-protein ID=mRNA_4879-protein|Name=jgi.p|Nanoce1779_2|445615|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MYVQVPYRLVIVATPLSFYFESLAVVAVSLVGLLSIMKCLLCTGPFGRLV
CPLFVSSALVLLPLTSCSFLVALSLSLTLRLSCSLSLSVSLPSLTLSLVL
PLPSLSSPMKDTGTSLKFHPPFGRLIFRALVRVHVVGYVRNKCSLHLSIY
ETPSPTLVSNCAPCVSAIPASFSSSVPSPPPSSVLFHRLSSF*
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mRNA from alignment at scaffold_9:865442..866206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4879 ID=mRNA_4879|Name=jgi.p|Nanoce1779_2|445615|organism=Nannochloropsis oceanica|type=mRNA|length=765bp|location=Sequence derived from alignment at scaffold_9:865442..866206- (Nannochloropsis oceanica)
CTCTTCTTCTTCCTCTTCTCGTTCTTCGTTCCGCTTATGAATCGATTGTG
GTGTATCCTCTTGGAGTGTGGATGAAGGGGGCTATAGCTATGTGTATATA
TGTATGTGCAGGTTCCTTATAGGCTTGTCATTGTTGCCACCCCTCTGTCT
TTCTACTTCGAGTCTCTTGCTGTTGTTGCTGTCTCTCTTGTTGGTCTCTT
ATCCATCATGAAATGTCTTTTGTGCACTGGTCCCTTCGGACGTCTCGTTT
GTCCTCTTTTCGTTTCTTCTGCCCTGGTGCTGCTGCCATTGACTTCTTGC
TCGTTCCTCGTTGCTCTCTCCCTTTCCCTCACTCTCCGTCTCTCTTGCTC
CCTCTCTCTCTCCGTCTCACTCCCTTCTCTCACTCTCTCCCTCGTCCTTC
CCCTCCCCTCTCTTTCCTCCCCGATGAAGGACACGGGGACTTCTCTTAAA
TTCCACCCTCCGTTTGGGCGGCTTATTTTTAGGGCTCTGGTACGTGTTCA
TGTGGTTGGATATGTGCGTAATAAATGCTCACTCCATTTATCCATTTATG
AAACGCCCTCTCCTACTCTCGTTTCAAATTGTGCCCCCTGCGTCTCAGCC
ATTCCAGCCTCCTTCTCTTCCTCGGTCCCTTCCCCCCCCCCTTCGTCTGT
CCTCTTTCACCGTCTTTCATCTTTCTAGCTGCCATTGTCATCCTTCAGGG
CATGCACTTGAATGTACACCACAAACTCTCTTTTATTATTATTATCTATT
CATGCCCAAGTCATG
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Coding sequence (CDS) from alignment at scaffold_9:865442..866206-

>mRNA_4879 ID=mRNA_4879|Name=jgi.p|Nanoce1779_2|445615|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_9:865442..866206- (Nannochloropsis oceanica)
ATGTATGTGCAGGTTCCTTATAGGCTTGTCATTGTTGCCACCCCTCTGTC
TTTCTACTTCGAGTCTCTTGCTGTTGTTGCTGTCTCTCTTGTTGGTCTCT
TATCCATCATGAAATGTCTTTTGTGCACTGGTCCCTTCGGACGTCTCGTT
TGTCCTCTTTTCGTTTCTTCTGCCCTGGTGCTGCTGCCATTGACTTCTTG
CTCGTTCCTCGTTGCTCTCTCCCTTTCCCTCACTCTCCGTCTCTCTTGCT
CCCTCTCTCTCTCCGTCTCACTCCCTTCTCTCACTCTCTCCCTCGTCCTT
CCCCTCCCCTCTCTTTCCTCCCCGATGAAGGACACGGGGACTTCTCTTAA
ATTCCACCCTCCGTTTGGGCGGCTTATTTTTAGGGCTCTGGTACGTGTTC
ATGTGGTTGGATATGTGCGTAATAAATGCTCACTCCATTTATCCATTTAT
GAAACGCCCTCTCCTACTCTCGTTTCAAATTGTGCCCCCTGCGTCTCAGC
CATTCCAGCCTCCTTCTCTTCCTCGGTCCCTTCCCCCCCCCCTTCGTCTG
TCCTCTTTCACCGTCTTTCATCTTTCTAG
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Synonyms
Publications