jgi.p|Nanoce1779_2|588216, mRNA_4878 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588216
Unique NamemRNA_4878
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length517
Alignment locationscaffold_9:863771..864287 -

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Properties
Property NameValue
TranscriptId588302
TrackFilteredModels2
ProteinId588216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:863771..864287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588216gene_4878Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588216mRNA_4878-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4878CDS_4878Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4878 ID=mRNA_4878|Name=jgi.p|Nanoce1779_2|588216|organism=Nannochloropsis oceanica|type=mRNA|length=517bp
CCTCCTCCGTCCCCACTCAGGGCCAAGAGGCGGGGAGGAAAATGGTCCTG
CTGGTATGGGTGGGGCTGATGGGGTTGCTGTTGTTGCTGAGGACGTTGCT
CTTCCATGCTTGCCCCCATACTATTGCCGGTACTGCTGCTGTTGCTTCCT
GTCATGGGCGCGATGTGCCCGGCCGCCACATCTGGGGCGGCGTCTGCGAC
AGCGGAGTTGGTCAAGGCGGAGGCGCTGCTGCTGCCACTGCTATTGTTGC
TGCTGCTGCATGTGGTACCGGTAGAGATGGTGTTTCTATCCATAGTGGTG
TCGAGAAAGGCGCAGAGGTCTTCTTGGTCGTCCCCGAATGGGCTAGAAGC
CGAGGAGGAGGAGGAGGAGGACCCTCCGGAGCAGGTGGTCCAGGTGGAGC
AGGAAGACGCCAAGGACGCCGCCGAAGTAAGAGGCAAAGGGGGCGCGATG
CCTAAGGTACCCATGATAACGCTTTCCATGGTTTGGGTGTGAGTGCAATG
GAGTTGCTTGAGACTGT
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protein sequence of jgi.p|Nanoce1779_2|588216

>mRNA_4878-protein ID=mRNA_4878-protein|Name=jgi.p|Nanoce1779_2|588216|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MVLLVWVGLMGLLLLLRTLLFHACPHTIAGTAAVASCHGRDVPGRHIWGG
VCDSGVGQGGGAAAATAIVAAAACGTGRDGVSIHSGVEKGAEVFLVVPEW
ARSRGGGGGGPSGAGGPGGAGRRQGRRRSKRQRGRDA*
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mRNA from alignment at scaffold_9:863771..864287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4878 ID=mRNA_4878|Name=jgi.p|Nanoce1779_2|588216|organism=Nannochloropsis oceanica|type=mRNA|length=517bp|location=Sequence derived from alignment at scaffold_9:863771..864287- (Nannochloropsis oceanica)
CCTCCTCCGTCCCCACTCAGGGCCAAGAGGCGGGGAGGAAAATGGTCCTG
CTGGTATGGGTGGGGCTGATGGGGTTGCTGTTGTTGCTGAGGACGTTGCT
CTTCCATGCTTGCCCCCATACTATTGCCGGTACTGCTGCTGTTGCTTCCT
GTCATGGGCGCGATGTGCCCGGCCGCCACATCTGGGGCGGCGTCTGCGAC
AGCGGAGTTGGTCAAGGCGGAGGCGCTGCTGCTGCCACTGCTATTGTTGC
TGCTGCTGCATGTGGTACCGGTAGAGATGGTGTTTCTATCCATAGTGGTG
TCGAGAAAGGCGCAGAGGTCTTCTTGGTCGTCCCCGAATGGGCTAGAAGC
CGAGGAGGAGGAGGAGGAGGACCCTCCGGAGCAGGTGGTCCAGGTGGAGC
AGGAAGACGCCAAGGACGCCGCCGAAGTAAGAGGCAAAGGGGGCGCGATG
CCTAAGGTACCCATGATAACGCTTTCCATGGTTTGGGTGTGAGTGCAATG
GAGTTGCTTGAGACTGT
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Coding sequence (CDS) from alignment at scaffold_9:863771..864287-

>mRNA_4878 ID=mRNA_4878|Name=jgi.p|Nanoce1779_2|588216|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_9:863771..864287- (Nannochloropsis oceanica)
ATGGTCCTGCTGGTATGGGTGGGGCTGATGGGGTTGCTGTTGTTGCTGAG
GACGTTGCTCTTCCATGCTTGCCCCCATACTATTGCCGGTACTGCTGCTG
TTGCTTCCTGTCATGGGCGCGATGTGCCCGGCCGCCACATCTGGGGCGGC
GTCTGCGACAGCGGAGTTGGTCAAGGCGGAGGCGCTGCTGCTGCCACTGC
TATTGTTGCTGCTGCTGCATGTGGTACCGGTAGAGATGGTGTTTCTATCC
ATAGTGGTGTCGAGAAAGGCGCAGAGGTCTTCTTGGTCGTCCCCGAATGG
GCTAGAAGCCGAGGAGGAGGAGGAGGAGGACCCTCCGGAGCAGGTGGTCC
AGGTGGAGCAGGAAGACGCCAAGGACGCCGCCGAAGTAAGAGGCAAAGGG
GGCGCGATGCCTAA
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Synonyms
Publications