jgi.p|Nanoce1779_2|588191, mRNA_4874 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588191
Unique NamemRNA_4874
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length891
Alignment locationscaffold_9:839600..840875 -

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Properties
Property NameValue
TranscriptId588277
TrackFilteredModels2
ProteinId588191
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:839600..840875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588191gene_4874Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588191mRNA_4874-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4874CDS_4874Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4874 ID=mRNA_4874|Name=jgi.p|Nanoce1779_2|588191|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
GGAGGGAGGGGGAGGGAGGGAAGGCGATGGCGTCGGTGTTGTCCTCGGCA
ACATGGGCCAAGGGCAAGAAGGGAGGGCGAGAGGACAATGAAAAGGAGAG
TGTGTCGATCGCCGGAAGGGATACAGAGGAGGCGGCTAGGGTTTTCTCTC
GCGTGTTGACCAAAATGCACTTGAAACGCTTGGTGGTACTGGGGCAGTTC
AACCTGGGCTTTATCATTGCTCGAATTGGCGCCGATGTGTTCATTCTGGA
TCAGCACGCCTGCGACGAAAAGTATAACTTTGAGACACTGCAGTCCACGA
CTACCCTCCATGAGCAGCGCCTCATTGCACCCAAGCCTCTCGAATTGAGT
GCCATGGAGGAAGTCATCATTCTCGAGCACCTCCACACCTTCAAACAGAA
TGGCTTCTCCTTTCTCGTCGACCCGGAGGCAGGGCCCATGCAGAGGGTGA
AACTCCTCTCCCTTCCTTACAGTAAAGGCGTCCAATTTGGCTTGGAAGAC
ATCCATGAACTCGCCTCCCTTCTCGGAGATTCCTCGTTTGGCTTTGCCGG
TGCCGATGGTGAGGGGGCAGGGGAGGAGAGCGGGAAGGAGGATAGAGGGC
AAGGCGGGCCCTCAGTGCGGCTGCCGAAGATTAGGGCCATGTTTGCATCC
AGGGCGTGTCGGATGTCGATTATGATTGGAAAGGCCTTGACCAAGCCGCA
GATGCAGAAGGTGGTGTCAAATTTGGCCGAGATTGAGCAACCCTGGAACT
GTCCTCACGGACGACCCACCATGCGACACCTGGTGGACCTGACGACGCTG
CAAGGAGGAGAAGGGATCTAATTAGAGAGCGTATATGACGAATTTGACAT
AGCACAAAGAAGCGATTTCTGGCCCTGTGCCTCAACATGAT
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protein sequence of jgi.p|Nanoce1779_2|588191

>mRNA_4874-protein ID=mRNA_4874-protein|Name=jgi.p|Nanoce1779_2|588191|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MASVLSSATWAKGKKGGREDNEKESVSIAGRDTEEAARVFSRVLTKMHLK
RLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLI
APKPLELSAMEEVIILEHLHTFKQNGFSFLVDPEAGPMQRVKLLSLPYSK
GVQFGLEDIHELASLLGDSSFGFAGADGEGAGEESGKEDRGQGGPSVRLP
KIRAMFASRACRMSIMIGKALTKPQMQKVVSNLAEIEQPWNCPHGRPTMR
HLVDLTTLQGGEGI*
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mRNA from alignment at scaffold_9:839600..840875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4874 ID=mRNA_4874|Name=jgi.p|Nanoce1779_2|588191|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp|location=Sequence derived from alignment at scaffold_9:839600..840875- (Nannochloropsis oceanica)
GGAGGGAGGGGGAGGGAGGGAAGGCGATGGCGTCGGTGTTGTCCTCGGCA
ACATGGGCCAAGGGCAAGAAGGGAGGGCGAGAGGACAATGAAAAGGAGAG
TGTGTCGATCGCCGGAAGGGATACAGAGGAGGCGGCTAGGGTTTTCTCTC
GCGTGTTGACCAAAATGCACTTGAAACGCTTGGTGGTACTGGGGCAGGTG
AGGATGGGAAGAGGGGGTAGGACGGGGGGCAGAAGGGAAGAAGGAAGACA
CCGGCACCACTCACTCATTGACCGACTCTTTCAACGTGTCTGATCCCTTT
CTTGTAGTTCAACCTGGGCTTTATCATTGCTCGAATTGGCGCCGATGTGT
TCATTCTGGATCAGCACGCCTGCGACGAAAAGTATAACTTTGAGACACTG
CAGGTAGGTAGGTCGGTCGGTAGGGAGGGAGGGAGGGAGGGAGGTAGGTA
GGTTGGGGATCGAAATACATCCCTTTTTTGTGTCCTCACCCATTTAATCC
TCCCTCTTTCCTTCACTCCGTCAGTCCACGACTACCCTCCATGAGCAGCG
CCTCATTGCACCCAAGCCTCTCGAATTGAGTGCCATGGAGGAAGTCATCA
TTCTCGAGCACCTCCACACCTTCAAACAGAATGGCTTCTCCTTTCTCGTC
GACCCGGAGGCAGGGCCCATGCAGAGGGTGAAACTCCTCTCCCTTCCTTA
CAGTAAAGGCGTCCAATTTGGCTTGGAAGACATCCATGAACTCGCCTCCC
TTCTCGGAGATTCCTCGTTTGGCTTTGCCGGTGCCGATGGTGAGGGGGCA
GGGGAGGAGAGCGGGAAGGAGGATAGAGGGCAAGGCGGGCCCTCAGTGCG
GCTGCCGAAGATTAGGGCCATGTTTGCATCCAGGGCGTGTCGGATGTCGA
TTATGATTGGAAAGGCCTTGACCAAGCCGCAGGTAATAAAAGGGAACGAG
AGAGGGAGGGTGGGAGGGAAAGAGGGAGGGAGGTGCCGGAATGAACAAAC
AGAATCAGATAAATTCCCACATTTGCTCACGTACATCGCCTGTTTTCCCT
TTCCTATTTCTTCCATCCTTTCCCCCCCCCCTCCAGATGCAGAAGGTGGT
GTCAAATTTGGCCGAGATTGAGCAACCCTGGAACTGTCCTCACGGACGAC
CCACCATGCGACACCTGGTGGACCTGACGACGCTGCAAGGAGGAGAAGGG
ATCTAATTAGAGAGCGTATATGACGAATTTGACATAGCACAAAGAAGCGA
TTTCTGGCCCTGTGCCTCAACATGAT
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Coding sequence (CDS) from alignment at scaffold_9:839600..840875-

>mRNA_4874 ID=mRNA_4874|Name=jgi.p|Nanoce1779_2|588191|organism=Nannochloropsis oceanica|type=CDS|length=3180bp|location=Sequence derived from alignment at scaffold_9:839600..840875- (Nannochloropsis oceanica)
ATGCAGAAGGTGGTGTCAAATTTGGCCGAGATTGAGCAACCCTGGAACTG
TCCTCACGGACGACCCACCATGCGACACCTGGTGGACCTGACGACGCTGC
AAGGAGGAGAAGGGATCTAATCCACGACTACCCTCCATGAGCAGCGCCTC
ATTGCACCCAAGCCTCTCGAATTGAGTGCCATGGAGGAAGTCATCATTCT
CGAGCACCTCCACACCTTCAAACAGAATGGCTTCTCCTTTCTCGTCGACC
CGGAGGCAGGGCCCATGCAGAGGGTGAAACTCCTCTCCCTTCCTTACAGT
AAAGGCGTCCAATTTGGCTTGGAAGACATCCATGAACTCGCCTCCCTTCT
CGGAGATTCCTCGTTTGGCTTTGCCGGTGCCGATGGTGAGGGGGCAGGGG
AGGAGAGCGGGAAGGAGGATAGAGGGCAAGGCGGGCCCTCAGTGCGGCTG
CCGAAGATTAGGGCCATGTTTGCATCCAGGGCGTGTCGGATGTCGATTAT
GATTGGAAAGGCCTTGACCAAGCCGCAGTTCAACCTGGGCTTTATCATTG
CTCGAATTGGCGCCGATGTGTTCATTCTGGATCAGCACGCCTGCGACGAA
AAGTATAACTTTGAGACACTGCAGATGGCGTCGGTGTTGTCCTCGGCAAC
ATGGGCCAAGGGCAAGAAGGGAGGGCGAGAGGACAATGAAAAGGAGAGTG
TGTCGATCGCCGGAAGGGATACAGAGGAGGCGGCTAGGGTTTTCTCTCGC
GTGTTGACCAAAATGCACTTGAAACGCTTGGTGGTACTGGGGCAGATGCA
GAAGGTGGTGTCAAATTTGGCCGAGATTGAGCAACCCTGGAACTGTCCTC
ACGGACGACCCACCATGCGACACCTGGTGGACCTGACGACGCTGCAAGGA
GGAGAAGGGATCTAATCCACGACTACCCTCCATGAGCAGCGCCTCATTGC
ACCCAAGCCTCTCGAATTGAGTGCCATGGAGGAAGTCATCATTCTCGAGC
ACCTCCACACCTTCAAACAGAATGGCTTCTCCTTTCTCGTCGACCCGGAG
GCAGGGCCCATGCAGAGGGTGAAACTCCTCTCCCTTCCTTACAGTAAAGG
CGTCCAATTTGGCTTGGAAGACATCCATGAACTCGCCTCCCTTCTCGGAG
ATTCCTCGTTTGGCTTTGCCGGTGCCGATGGTGAGGGGGCAGGGGAGGAG
AGCGGGAAGGAGGATAGAGGGCAAGGCGGGCCCTCAGTGCGGCTGCCGAA
GATTAGGGCCATGTTTGCATCCAGGGCGTGTCGGATGTCGATTATGATTG
GAAAGGCCTTGACCAAGCCGCAGTTCAACCTGGGCTTTATCATTGCTCGA
ATTGGCGCCGATGTGTTCATTCTGGATCAGCACGCCTGCGACGAAAAGTA
TAACTTTGAGACACTGCAGATGGCGTCGGTGTTGTCCTCGGCAACATGGG
CCAAGGGCAAGAAGGGAGGGCGAGAGGACAATGAAAAGGAGAGTGTGTCG
ATCGCCGGAAGGGATACAGAGGAGGCGGCTAGGGTTTTCTCTCGCGTGTT
GACCAAAATGCACTTGAAACGCTTGGTGGTACTGGGGCAGATGCAGAAGG
TGGTGTCAAATTTGGCCGAGATTGAGCAACCCTGGAACTGTCCTCACGGA
CGACCCACCATGCGACACCTGGTGGACCTGACGACGCTGCAAGGAGGAGA
AGGGATCTAATCCACGACTACCCTCCATGAGCAGCGCCTCATTGCACCCA
AGCCTCTCGAATTGAGTGCCATGGAGGAAGTCATCATTCTCGAGCACCTC
CACACCTTCAAACAGAATGGCTTCTCCTTTCTCGTCGACCCGGAGGCAGG
GCCCATGCAGAGGGTGAAACTCCTCTCCCTTCCTTACAGTAAAGGCGTCC
AATTTGGCTTGGAAGACATCCATGAACTCGCCTCCCTTCTCGGAGATTCC
TCGTTTGGCTTTGCCGGTGCCGATGGTGAGGGGGCAGGGGAGGAGAGCGG
GAAGGAGGATAGAGGGCAAGGCGGGCCCTCAGTGCGGCTGCCGAAGATTA
GGGCCATGTTTGCATCCAGGGCGTGTCGGATGTCGATTATGATTGGAAAG
GCCTTGACCAAGCCGCAGTTCAACCTGGGCTTTATCATTGCTCGAATTGG
CGCCGATGTGTTCATTCTGGATCAGCACGCCTGCGACGAAAAGTATAACT
TTGAGACACTGCAGATGGCGTCGGTGTTGTCCTCGGCAACATGGGCCAAG
GGCAAGAAGGGAGGGCGAGAGGACAATGAAAAGGAGAGTGTGTCGATCGC
CGGAAGGGATACAGAGGAGGCGGCTAGGGTTTTCTCTCGCGTGTTGACCA
AAATGCACTTGAAACGCTTGGTGGTACTGGGGCAGATGCAGAAGGTGGTG
TCAAATTTGGCCGAGATTGAGCAACCCTGGAACTGTCCTCACGGACGACC
CACCATGCGACACCTGGTGGACCTGACGACGCTGCAAGGAGGAGAAGGGA
TCTAATCCACGACTACCCTCCATGAGCAGCGCCTCATTGCACCCAAGCCT
CTCGAATTGAGTGCCATGGAGGAAGTCATCATTCTCGAGCACCTCCACAC
CTTCAAACAGAATGGCTTCTCCTTTCTCGTCGACCCGGAGGCAGGGCCCA
TGCAGAGGGTGAAACTCCTCTCCCTTCCTTACAGTAAAGGCGTCCAATTT
GGCTTGGAAGACATCCATGAACTCGCCTCCCTTCTCGGAGATTCCTCGTT
TGGCTTTGCCGGTGCCGATGGTGAGGGGGCAGGGGAGGAGAGCGGGAAGG
AGGATAGAGGGCAAGGCGGGCCCTCAGTGCGGCTGCCGAAGATTAGGGCC
ATGTTTGCATCCAGGGCGTGTCGGATGTCGATTATGATTGGAAAGGCCTT
GACCAAGCCGCAGTTCAACCTGGGCTTTATCATTGCTCGAATTGGCGCCG
ATGTGTTCATTCTGGATCAGCACGCCTGCGACGAAAAGTATAACTTTGAG
ACACTGCAGATGGCGTCGGTGTTGTCCTCGGCAACATGGGCCAAGGGCAA
GAAGGGAGGGCGAGAGGACAATGAAAAGGAGAGTGTGTCGATCGCCGGAA
GGGATACAGAGGAGGCGGCTAGGGTTTTCTCTCGCGTGTTGACCAAAATG
CACTTGAAACGCTTGGTGGTACTGGGGCAG
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Synonyms
Publications