jgi.p|Nanoce1779_2|588180, mRNA_4871 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588180
Unique NamemRNA_4871
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length638
Alignment locationscaffold_9:830036..831206 -

Link to JBrowse

Properties
Property NameValue
TranscriptId588266
TrackFilteredModels2
ProteinId588180
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:830036..831206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588180gene_4871Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588180mRNA_4871-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4871CDS_4871Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4871 ID=mRNA_4871|Name=jgi.p|Nanoce1779_2|588180|organism=Nannochloropsis oceanica|type=mRNA|length=638bp
ACAGACCACTATTCAACCATGGACATGATCAAGCGTGTCGTCTCTTTTAT
CTTCCTTGTCATGTTCATCTTGGGCACGGTCGTCCAGTTCAATGACCCGG
ATCCCGCAGTGTGGGTGCTCTACTACTCCTCTGCCTCTCTTTTGGCATTC
ATGGCACTGGTCGGTGCCAACGTCCGCTCAGGCTCCTTCGCCCACCTCGA
TAAAGCCGCGCGGTCGGTAGCAATCCTCATGTCACTGTACTGGATCATTT
CCTACTTTCCTACAGTGCAACAGGATTACAAAAACAAGAACGGCGATATA
ATGCGCATGGTCATCCAGAAAGACGGCAATATTAAGATGAAGGACGAGCC
TATGGAGCTCGCGCGGGAGTTCGGAGGGGCATGCATCATTTTGATGTATT
CGTTGGTGCTGTATCCTTTGTCGACGGTGGCGGGGGTGAAGGATGGGAAG
AGCAAGAAGGCGATGTGAAGGCCCACGGGAGGAATGGAGTGAGTGAAGGA
AGGAGGAATAGGATGATGTTTAAAGGATGTCAATCAGTGTCTTGATCGTC
GCTCTGCTTGGATACATGTTAAGATGTCAGTGTGTCCTTGTTCGGACGGG
GACTTGGGGTGTATCCCGCATGTGTGTGTGTGGGTGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|588180

>mRNA_4871-protein ID=mRNA_4871-protein|Name=jgi.p|Nanoce1779_2|588180|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MDMIKRVVSFIFLVMFILGTVVQFNDPDPAVWVLYYSSASLLAFMALVGA
NVRSGSFAHLDKAARSVAILMSLYWIISYFPTVQQDYKNKNGDIMRMVIQ
KDGNIKMKDEPMELAREFGGACIILMYSLVLYPLSTVAGVKDGKSKKAM*
back to top

mRNA from alignment at scaffold_9:830036..831206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4871 ID=mRNA_4871|Name=jgi.p|Nanoce1779_2|588180|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp|location=Sequence derived from alignment at scaffold_9:830036..831206- (Nannochloropsis oceanica)
ACAGACCACTATTCAACCATGGACATGATCAAGCGTGTCGTCTCTTTTAT
CTTCCTTGTCATGTTCATCTTGGGCACGGTCGTCCAGGTAAGACTCATGT
TGCATCCCTCCCCATTCTTTTTTTTTCTTAGTCACACGCACACACACAAT
CCTCTACTTTCCCCCTCCCGCGTGCCCCACATGTAACACACTTCTGACAC
CATGCCATTTCACTTTTCCTTCTTCATCAGTTCAATGACCCGGATCCCGC
AGTGTGGGTGCTCTACTACTCCTCTGCCTCTCTTTTGGCATTCATGGCAC
TGGTCGGTGCCAACGTCCGCTCAGGCTCCTTCGCCCACCTCGATAAAGCC
GCGCGGTCGGTAGCAATCCTCATGTCACTGTACTGGATCATTTCCTACTT
TCCTACAGTGCAACAGGATTACAAAAACAAGAACGGCGATGTACGTCTTA
CTTTCCCATCTTCAATCCCTAAGTCCATTCCTTCATCCTCCTTCCCTTTC
TCCTCCTTTTTTACCACATACTCCACATTTGGTTTTGGCTGACTGGATTA
TGCCCGTAATCTGCCTTCGGGCCCACATCTTCATGATATTTGTTGTGTGC
CGAATGCGTGTTGCTACTTTCTCGGATGGTGTATTGCGGTGCCCCGGGGC
ATGGTTGGGGGAGGGCTTCTATATGAGTAGCTCGTCGTGTCATCGATCGC
TGTCGTCGGTCGCGGTCGACTCTTCTGACTCAGACCTTTCCATCTTCTTA
GCCTTGACAAAAAGTCACTCCGCGTGCTTATTTCCCCCTCTCACCCTCCC
CCCCTTTCCACCCTCGCTTCTTCCTTCTAGATAATGCGCATGGTCATCCA
GAAAGACGGCAATATTAAGATGAAGGACGAGCCTATGGAGCTCGCGCGGG
AGTTCGGAGGGGCATGCATCATTTTGATGTATTCGTTGGTGCTGTATCCT
TTGTCGACGGTGGCGGGGGTGAAGGATGGGAAGAGCAAGAAGGCGATGTG
AAGGCCCACGGGAGGAATGGAGTGAGTGAAGGAAGGAGGAATAGGATGAT
GTTTAAAGGATGTCAATCAGTGTCTTGATCGTCGCTCTGCTTGGATACAT
GTTAAGATGTCAGTGTGTCCTTGTTCGGACGGGGACTTGGGGTGTATCCC
GCATGTGTGTGTGTGGGTGGG
back to top

Coding sequence (CDS) from alignment at scaffold_9:830036..831206-

>mRNA_4871 ID=mRNA_4871|Name=jgi.p|Nanoce1779_2|588180|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_9:830036..831206- (Nannochloropsis oceanica)
ATAATGCGCATGGTCATCCAGAAAGACGGCAATATTAAGATGAAGGACGA
GCCTATGGAGCTCGCGCGGGAGTTCGGAGGGGCATGCATCATTTTGATGT
ATTCGTTGGTGCTGTATCCTTTGTCGACGGTGGCGGGGGTGAAGGATGGG
AAGAGCAAGAAGGCGATGTGATTCAATGACCCGGATCCCGCAGTGTGGGT
GCTCTACTACTCCTCTGCCTCTCTTTTGGCATTCATGGCACTGGTCGGTG
CCAACGTCCGCTCAGGCTCCTTCGCCCACCTCGATAAAGCCGCGCGGTCG
GTAGCAATCCTCATGTCACTGTACTGGATCATTTCCTACTTTCCTACAGT
GCAACAGGATTACAAAAACAAGAACGGCGATATGGACATGATCAAGCGTG
TCGTCTCTTTTATCTTCCTTGTCATGTTCATCTTGGGCACGGTCGTCCAG
ATAATGCGCATGGTCATCCAGAAAGACGGCAATATTAAGATGAAGGACGA
GCCTATGGAGCTCGCGCGGGAGTTCGGAGGGGCATGCATCATTTTGATGT
ATTCGTTGGTGCTGTATCCTTTGTCGACGGTGGCGGGGGTGAAGGATGGG
AAGAGCAAGAAGGCGATGTGATTCAATGACCCGGATCCCGCAGTGTGGGT
GCTCTACTACTCCTCTGCCTCTCTTTTGGCATTCATGGCACTGGTCGGTG
CCAACGTCCGCTCAGGCTCCTTCGCCCACCTCGATAAAGCCGCGCGGTCG
GTAGCAATCCTCATGTCACTGTACTGGATCATTTCCTACTTTCCTACAGT
GCAACAGGATTACAAAAACAAGAACGGCGATATGGACATGATCAAGCGTG
TCGTCTCTTTTATCTTCCTTGTCATGTTCATCTTGGGCACGGTCGTCCAG
ATAATGCGCATGGTCATCCAGAAAGACGGCAATATTAAGATGAAGGACGA
GCCTATGGAGCTCGCGCGGGAGTTCGGAGGGGCATGCATCATTTTGATGT
ATTCGTTGGTGCTGTATCCTTTGTCGACGGTGGCGGGGGTGAAGGATGGG
AAGAGCAAGAAGGCGATGTGATTCAATGACCCGGATCCCGCAGTGTGGGT
GCTCTACTACTCCTCTGCCTCTCTTTTGGCATTCATGGCACTGGTCGGTG
CCAACGTCCGCTCAGGCTCCTTCGCCCACCTCGATAAAGCCGCGCGGTCG
GTAGCAATCCTCATGTCACTGTACTGGATCATTTCCTACTTTCCTACAGT
GCAACAGGATTACAAAAACAAGAACGGCGATATGGACATGATCAAGCGTG
TCGTCTCTTTTATCTTCCTTGTCATGTTCATCTTGGGCACGGTCGTCCAG
back to top
Synonyms
Publications