jgi.p|Nanoce1779_2|588179, mRNA_4870 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588179
Unique NamemRNA_4870
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1000
Alignment locationscaffold_9:828883..829882 +

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Properties
Property NameValue
TranscriptId588265
TrackFilteredModels2
ProteinId588179
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:828883..829882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588179gene_4870Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588179mRNA_4870-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4870CDS_4870Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4870 ID=mRNA_4870|Name=jgi.p|Nanoce1779_2|588179|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
CAGGTCGTCGCTGGTGCCACTTAGCCATGGTACCAGCAAAGCTAGCTGTC
CCTCGAAAATCAAGATGTGGGCGTCGTCACCTTCCCATTCTTTCTTCCTT
CTCGTTATTCCTCCTTCTCATTGTCGTGGACGGCTGGCTCGTCCCCTTTA
CCTCTCCTATGACAACGAGTAGAATATGTATCCACAGAAGCCCATCCCTT
ACAACCACCGCAACTGCACTCTTCTCCTCCCTCCTCCCTTCCATATCGCC
CTCTGCTGGCCCGCCGGCCCCATGGTTTATAGATGGCGTCAAGTTCGAAT
GCACGGCTTGCGGGAAATGCTGTCGTGTCAAAGGCGACGTATGGCTGAGT
CCCAGTGAAGTGGAAGGCGCCGCGCGCTTCCTTAAGCTAACCCCGGCTCA
ATTTTTAACTGAGTGGGGGGAGGAAGAGAAGCATAACTGGGTCCGTTTGA
AGAGTCGAATTTTCCCGCCTGAGAAGGGGGGAGGGGAAGGGTGTGTATTC
TTGGATGATGAGTCAAAGTGCTCGATATATGAGGCACGACCTTTACAATG
TCGCACATATCCTTACTGGCCGAGGGTGATGCGGTCGAGGGAGGCATGGG
AGGATGAGCGAGTGGTACCGGATGGGGAGGCAGGGGAGGAGGAGACGAGG
GTGACAGGAAGGAGGAGGTGGGATCCGGTGGAGGGAGGATGTGAGGGGAT
TGAGAACCCTGATGCAGGCGTAGTAGACTTCAATATCGTGAGGCAGCAGC
TCTTGATGCAGATCGGGTACAACCGGGCCTTGCCGAGCGAGAGGAAGGCG
TAAATCATCATACTTGATGTAAATCATCACACTTGCTGTATGACACGAAG
GACGAAGGTGATAAAGGGAGAAGGATATGAATCACCATTTCAACTGTGTG
GACAAAAGGGGGAAGGGCGGAAAGAATTGACAATTGATTGAGAAAAAGAA
TGATTGAAAGCGAGGATGATGAAGGGTGTAGGAGACGCAAAACAGCAGAC
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protein sequence of jgi.p|Nanoce1779_2|588179

>mRNA_4870-protein ID=mRNA_4870-protein|Name=jgi.p|Nanoce1779_2|588179|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MVPAKLAVPRKSRCGRRHLPILSSFSLFLLLIVVDGWLVPFTSPMTTSRI
CIHRSPSLTTTATALFSSLLPSISPSAGPPAPWFIDGVKFECTACGKCCR
VKGDVWLSPSEVEGAARFLKLTPAQFLTEWGEEEKHNWVRLKSRIFPPEK
GGGEGCVFLDDESKCSIYEARPLQCRTYPYWPRVMRSREAWEDERVVPDG
EAGEEETRVTGRRRWDPVEGGCEGIENPDAGVVDFNIVRQQLLMQIGYNR
ALPSERKA*
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mRNA from alignment at scaffold_9:828883..829882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4870 ID=mRNA_4870|Name=jgi.p|Nanoce1779_2|588179|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp|location=Sequence derived from alignment at scaffold_9:828883..829882+ (Nannochloropsis oceanica)
CAGGTCGTCGCTGGTGCCACTTAGCCATGGTACCAGCAAAGCTAGCTGTC
CCTCGAAAATCAAGATGTGGGCGTCGTCACCTTCCCATTCTTTCTTCCTT
CTCGTTATTCCTCCTTCTCATTGTCGTGGACGGCTGGCTCGTCCCCTTTA
CCTCTCCTATGACAACGAGTAGAATATGTATCCACAGAAGCCCATCCCTT
ACAACCACCGCAACTGCACTCTTCTCCTCCCTCCTCCCTTCCATATCGCC
CTCTGCTGGCCCGCCGGCCCCATGGTTTATAGATGGCGTCAAGTTCGAAT
GCACGGCTTGCGGGAAATGCTGTCGTGTCAAAGGCGACGTATGGCTGAGT
CCCAGTGAAGTGGAAGGCGCCGCGCGCTTCCTTAAGCTAACCCCGGCTCA
ATTTTTAACTGAGTGGGGGGAGGAAGAGAAGCATAACTGGGTCCGTTTGA
AGAGTCGAATTTTCCCGCCTGAGAAGGGGGGAGGGGAAGGGTGTGTATTC
TTGGATGATGAGTCAAAGTGCTCGATATATGAGGCACGACCTTTACAATG
TCGCACATATCCTTACTGGCCGAGGGTGATGCGGTCGAGGGAGGCATGGG
AGGATGAGCGAGTGGTACCGGATGGGGAGGCAGGGGAGGAGGAGACGAGG
GTGACAGGAAGGAGGAGGTGGGATCCGGTGGAGGGAGGATGTGAGGGGAT
TGAGAACCCTGATGCAGGCGTAGTAGACTTCAATATCGTGAGGCAGCAGC
TCTTGATGCAGATCGGGTACAACCGGGCCTTGCCGAGCGAGAGGAAGGCG
TAAATCATCATACTTGATGTAAATCATCACACTTGCTGTATGACACGAAG
GACGAAGGTGATAAAGGGAGAAGGATATGAATCACCATTTCAACTGTGTG
GACAAAAGGGGGAAGGGCGGAAAGAATTGACAATTGATTGAGAAAAAGAA
TGATTGAAAGCGAGGATGATGAAGGGTGTAGGAGACGCAAAACAGCAGAC
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Coding sequence (CDS) from alignment at scaffold_9:828883..829882+

>mRNA_4870 ID=mRNA_4870|Name=jgi.p|Nanoce1779_2|588179|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at scaffold_9:828883..829882+ (Nannochloropsis oceanica)
ATGGTACCAGCAAAGCTAGCTGTCCCTCGAAAATCAAGATGTGGGCGTCG
TCACCTTCCCATTCTTTCTTCCTTCTCGTTATTCCTCCTTCTCATTGTCG
TGGACGGCTGGCTCGTCCCCTTTACCTCTCCTATGACAACGAGTAGAATA
TGTATCCACAGAAGCCCATCCCTTACAACCACCGCAACTGCACTCTTCTC
CTCCCTCCTCCCTTCCATATCGCCCTCTGCTGGCCCGCCGGCCCCATGGT
TTATAGATGGCGTCAAGTTCGAATGCACGGCTTGCGGGAAATGCTGTCGT
GTCAAAGGCGACGTATGGCTGAGTCCCAGTGAAGTGGAAGGCGCCGCGCG
CTTCCTTAAGCTAACCCCGGCTCAATTTTTAACTGAGTGGGGGGAGGAAG
AGAAGCATAACTGGGTCCGTTTGAAGAGTCGAATTTTCCCGCCTGAGAAG
GGGGGAGGGGAAGGGTGTGTATTCTTGGATGATGAGTCAAAGTGCTCGAT
ATATGAGGCACGACCTTTACAATGTCGCACATATCCTTACTGGCCGAGGG
TGATGCGGTCGAGGGAGGCATGGGAGGATGAGCGAGTGGTACCGGATGGG
GAGGCAGGGGAGGAGGAGACGAGGGTGACAGGAAGGAGGAGGTGGGATCC
GGTGGAGGGAGGATGTGAGGGGATTGAGAACCCTGATGCAGGCGTAGTAG
ACTTCAATATCGTGAGGCAGCAGCTCTTGATGCAGATCGGGTACAACCGG
GCCTTGCCGAGCGAGAGGAAGGCGTAA
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Synonyms
Publications