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Properties
| Property Name | Value |
|---|
| TranscriptId | 577535 |
| Track | FilteredModels2 |
| ProteinId | 577449 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1178441..1179912 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_487 ID=mRNA_487|Name=jgi.p|Nanoce1779_2|577449|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp
GGAGGCTCCAAGTCGTCGTTTTGCCCACTTTCTCATCTCGTTGAACTTCT
CGGGGCCGCTCAACCACACCTGTCATAATGTCTCTCGCACAGGCAATGAA
CATGCGATCGAAGACGGTAACAAGAATAAGGGAAAGCAACAGCCGACGGA
GCGGGGCATTGATGGTGGGGGCGGCAGCGCTTCTTGTGGGATGGCGGGCA
CCCGAGGCTCAGGTACGTACGCAATGACGACCGCCCACTCTCCCCCCGCC
CTTCTAAAATGGCCTAATAAATATAGGATTGCCCGGCACTAGGAATACAT
ACTCACGCTCGCGTGTTCTACACTCAATAACGCCAGGAGGTGGCCTCCTC
TTGAAACTATGCCGCAATTTTGCACACGCCCCTTTTCCCTCCCCCCTTCC
GGTGCTCCCTCCCTCCCTGTTTTCCTCTTAGCATCTCCTCCTGTCCCGTC
CAACGGACAAACAATGCTTGCATCCCAATGTCACGTCGCCTTCTAGATCA
ACAATCATTCCCTCAAATTAATACCTCGTCATGCACGCGTATACAGAGGC
TCTGCTGCCTTTCTTTTTCTACTCCGAGAGCAACCATCCTCTCACCCGTC
CCTTTCCTCCTCTCCTCCATTTCCACCTCCCTACCCACACAGGCATTTAC
ACTCAGCAACCCCATTCACCAAAATCTCCAATCCCTGGCCCGCCATCACA
TCAGTAGCAGCTTTACCCCCCTTCATGGCTCCCTCCCCCCTTACGATGCG
CCCTACTCCCAACCGGAGGAAGAAAAGAACTTTTGGGGCAATGACTACGT
ACCTAAGGAGCGACATCCCGGAACAATGCCACCAGGGACAAGGTTGGAAG
ACAAGCCGATTGCAGAGTTGTCCCCTGTGTCGAATATTCCGTACCCGCAC
TTCCAGGAATGGCCCTATCATTACCGTTTCCCGGCCTACCAGCCCCGCAG
GCTGGACTTCATCGAGTGGATGACACAGAGAGGGCTTATGGTGGAAGATG
ATGGGGACACACGGGGAGTGCGATTTTTGGGGAGGAAGAGGAGGTTTAGG
GCGCAGAAGGCACAGGCGGATAAGGCTGCGGCGGAGGGGAGTGACCCCAT
GACGGTCGATGAGAGGAAACAGGCAATGGAGGGGATCGACGGGGATTATT
GGCGCTCGGAAAGCGCGGAGCTTGTGGAACCGGAGCCGTTTATTTTTGAA
CGAGCTAAGCAGAAACGGTTTAGGATTCCGTATATTGTGGGTGTAAGGGA
GGAGAAGGCGGCGAGGCTGGCAGCGGAGGCGGCGGCGGGGGGAGGGGGGG
AAGGAGGGTTGATGGGTGGGAGGGATGTGGTTAGTGGAGCATCGGCGCCA
GAGGCAGGGGAAAAGCTAGCTAAGGGGAGGAAGACGGCCGCTAAGCCGCC
GCCGACTGCCGAGATCTAAGCAGGTGATCAGAGAGCATGTTGAGGGGATG
GTAGGAAGAGAGAAAAAGCGGG back to topprotein sequence of jgi.p|Nanoce1779_2|577449 >mRNA_487-protein ID=mRNA_487-protein|Name=jgi.p|Nanoce1779_2|577449|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MSRRLLDQQSFPQINTSSCTRIQRLCCLSFSTPRATILSPVPFLLSSIST
SLPTQAFTLSNPIHQNLQSLARHHISSSFTPLHGSLPPYDAPYSQPEEEK
NFWGNDYVPKERHPGTMPPGTRLEDKPIAELSPVSNIPYPHFQEWPYHYR
FPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKA
AAEGSDPMTVDERKQAMEGIDGDYWRSESAELVEPEPFIFERAKQKRFRI
PYIVGVREEKAARLAAEAAAGGGGEGGLMGGRDVVSGASAPEAGEKLAKG
RKTAAKPPPTAEI* back to topmRNA from alignment at scaffold_3:1178441..1179912- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_487 ID=mRNA_487|Name=jgi.p|Nanoce1779_2|577449|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp|location=Sequence derived from alignment at scaffold_3:1178441..1179912- (Nannochloropsis oceanica)
GGAGGCTCCAAGTCGTCGTTTTGCCCACTTTCTCATCTCGTTGAACTTCT
CGGGGCCGCTCAACCACACCTGTCATAATGTCTCTCGCACAGGCAATGAA
CATGCGATCGAAGACGGTAACAAGAATAAGGGAAAGCAACAGCCGACGGA
GCGGGGCATTGATGGTGGGGGCGGCAGCGCTTCTTGTGGGATGGCGGGCA
CCCGAGGCTCAGGTACGTACGCAATGACGACCGCCCACTCTCCCCCCGCC
CTTCTAAAATGGCCTAATAAATATAGGATTGCCCGGCACTAGGAATACAT
ACTCACGCTCGCGTGTTCTACACTCAATAACGCCAGGAGGTGGCCTCCTC
TTGAAACTATGCCGCAATTTTGCACACGCCCCTTTTCCCTCCCCCCTTCC
GGTGCTCCCTCCCTCCCTGTTTTCCTCTTAGCATCTCCTCCTGTCCCGTC
CAACGGACAAACAATGCTTGCATCCCAATGTCACGTCGCCTTCTAGATCA
ACAATCATTCCCTCAAATTAATACCTCGTCATGCACGCGTATACAGAGGC
TCTGCTGCCTTTCTTTTTCTACTCCGAGAGCAACCATCCTCTCACCCGTC
CCTTTCCTCCTCTCCTCCATTTCCACCTCCCTACCCACACAGGCATTTAC
ACTCAGCAACCCCATTCACCAAAATCTCCAATCCCTGGCCCGCCATCACA
TCAGTAGCAGCTTTACCCCCCTTCATGGCTCCCTCCCCCCTTACGATGCG
CCCTACTCCCAACCGGAGGAAGAAAAGAACTTTTGGGGCAATGACTACGT
ACCTAAGGAGCGACATCCCGGAACAATGCCACCAGGGACAAGGTTGGAAG
ACAAGCCGATTGCAGAGTTGTCCCCTGTGTCGAATATTCCGTACCCGCAC
TTCCAGGAATGGCCCTATCATTACCGTTTCCCGGCCTACCAGCCCCGCAG
GCTGGACTTCATCGAGTGGATGACACAGAGAGGGCTTATGGTGGAAGATG
ATGGGGACACACGGGGAGTGCGATTTTTGGGGAGGAAGAGGAGGTTTAGG
GCGCAGAAGGCACAGGCGGATAAGGCTGCGGCGGAGGGGAGTGACCCCAT
GACGGTCGATGAGAGGAAACAGGCAATGGAGGGGATCGACGGGGATTATT
GGCGCTCGGAAAGCGCGGAGCTTGTGGAACCGGAGCCGTTTATTTTTGAA
CGAGCTAAGCAGAAACGGTTTAGGATTCCGTATATTGTGGGTGTAAGGGA
GGAGAAGGCGGCGAGGCTGGCAGCGGAGGCGGCGGCGGGGGGAGGGGGGG
AAGGAGGGTTGATGGGTGGGAGGGATGTGGTTAGTGGAGCATCGGCGCCA
GAGGCAGGGGAAAAGCTAGCTAAGGGGAGGAAGACGGCCGCTAAGCCGCC
GCCGACTGCCGAGATCTAAGCAGGTGATCAGAGAGCATGTTGAGGGGATG
GTAGGAAGAGAGAAAAAGCGGG back to topCoding sequence (CDS) from alignment at scaffold_3:1178441..1179912- >mRNA_487 ID=mRNA_487|Name=jgi.p|Nanoce1779_2|577449|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_3:1178441..1179912- (Nannochloropsis oceanica)
ATGTCACGTCGCCTTCTAGATCAACAATCATTCCCTCAAATTAATACCTC
GTCATGCACGCGTATACAGAGGCTCTGCTGCCTTTCTTTTTCTACTCCGA
GAGCAACCATCCTCTCACCCGTCCCTTTCCTCCTCTCCTCCATTTCCACC
TCCCTACCCACACAGGCATTTACACTCAGCAACCCCATTCACCAAAATCT
CCAATCCCTGGCCCGCCATCACATCAGTAGCAGCTTTACCCCCCTTCATG
GCTCCCTCCCCCCTTACGATGCGCCCTACTCCCAACCGGAGGAAGAAAAG
AACTTTTGGGGCAATGACTACGTACCTAAGGAGCGACATCCCGGAACAAT
GCCACCAGGGACAAGGTTGGAAGACAAGCCGATTGCAGAGTTGTCCCCTG
TGTCGAATATTCCGTACCCGCACTTCCAGGAATGGCCCTATCATTACCGT
TTCCCGGCCTACCAGCCCCGCAGGCTGGACTTCATCGAGTGGATGACACA
GAGAGGGCTTATGGTGGAAGATGATGGGGACACACGGGGAGTGCGATTTT
TGGGGAGGAAGAGGAGGTTTAGGGCGCAGAAGGCACAGGCGGATAAGGCT
GCGGCGGAGGGGAGTGACCCCATGACGGTCGATGAGAGGAAACAGGCAAT
GGAGGGGATCGACGGGGATTATTGGCGCTCGGAAAGCGCGGAGCTTGTGG
AACCGGAGCCGTTTATTTTTGAACGAGCTAAGCAGAAACGGTTTAGGATT
CCGTATATTGTGGGTGTAAGGGAGGAGAAGGCGGCGAGGCTGGCAGCGGA
GGCGGCGGCGGGGGGAGGGGGGGAAGGAGGGTTGATGGGTGGGAGGGATG
TGGTTAGTGGAGCATCGGCGCCAGAGGCAGGGGAAAAGCTAGCTAAGGGG
AGGAAGACGGCCGCTAAGCCGCCGCCGACTGCCGAGATCTAA back to top
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