jgi.p|Nanoce1779_2|638954, mRNA_4868 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638954
Unique Name	mRNA_4868
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1149
Alignment location	scaffold_9:825394..827216 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	639040
Track	FilteredModels2
ProteinId	638954

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:825394..827216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638954	gene_4868	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638954	mRNA_4868-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4868	CDS_4868	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:825394..827216+
coding sequence from alignment at scaffold_9:825394..827216+

mRNA sequence

>mRNA_4868 ID=mRNA_4868|Name=jgi.p|Nanoce1779_2|638954|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
ATGGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGC
ACAAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCA
GGCCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGG
CAACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCG
TAGCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGG
GAGGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATT
CACGGAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCCT
CTCTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAGA
GCCCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATTG
TTCGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCAA
TATCCTGGTTGGACATTCTTTCGGCCTGGTCCTCCTCGCTTCTGCGTATC
ATGTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTC
AACCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGA
CGCCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAG
GTAACCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGGCC
ACCATTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCACGG
CGAAACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGCCA
ATTTACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAGTG
ATGCAAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCCAC
AAAGTGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGAGGA
AGAGAACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCTTC
CCTCAGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAGGA
GCACGCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTAG

protein sequence of jgi.p|Nanoce1779_2|638954

>mRNA_4868-protein ID=mRNA_4868-protein|Name=jgi.p|Nanoce1779_2|638954|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MEDDEWQQQLWHQQEHAQALPPLQRVELKPRPGRPKGEPARAVSLLEIPR
QRQFQKPQGEGQNKEQRSHEAKREEGMEEEFEEGGDVEEGEEEVVTVFLI
HGAMATWRQFMRLLPSLSRYFRVVCFDAYGCGESPKPAGVDGSAFSTDEL
FEDLKEVYDRFKGKGGNILVGHSFGLVLLASAYHVPDGGNPIFTLPLPVL
NLIKPIISQVFKSKAIDAHAPSSVWKEQARGNQGNPMYIVKAFYRHLRWA
TIETIHSLACPCEVVHGETDGIIPLYQGRALAANLLKANFHVFRETGHQV
MQERPAETAALIIAAATKWSRARRRAGGKEGRRKRTMLTGKMVEEVEISF
PQRIAKEEEEDEQEEEEHAEERVERSEGDKVT*

mRNA from alignment at scaffold_9:825394..827216+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4868 ID=mRNA_4868|Name=jgi.p|Nanoce1779_2|638954|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp|location=Sequence derived from alignment at scaffold_9:825394..827216+ (Nannochloropsis oceanica)
ATGGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGC
ACAAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCA
GGCCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGG
CAACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCG
TAGCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGG
GAGGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATT
CACGGAGGTACGCTTGCTCATTGCCTTCCTGTCGACTCACTCGTTGCATT
ATTTTTCACAATCTTCCTTCTCTACTCTTTCCGTCCCTCCCCCCTCGACA
CACCCCAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCC
TCTCTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAG
AGCCCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATT
GTTCGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCA
ATATCCTGGTTGGACATTCTTTCGGTTCCTCCCAGGTGATGAGACTGGCT
GAGTGCGTACAACAGAGAGAGGGAGGGCCTGGGCAGAGTCAGCACCAGCA
CCAGCACCAGCATCATCACCAGCCGCACCAGCCGTCTCAGTATGAGCATC
ACGCCGGAGCGCTAGTACGAGGAGCGATGCATCCTCCTTTTTCCTTCCCA
TCCTCCTCCTCCTCTATTCTAGGCCTGGTCCTCCTCGCTTCTGCGTATCA
TGTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTCA
ACCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGAC
GCCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAGG
TATCTAAGCAGTGGATGTGGGACAATAAATGATAATAACGTTATAATGGT
TACCAAAAACGATGATAATAACAACATGTACAGAATGATGATTGGGAGCT
TGTTAAAACAATGTAGTAATCAATAACCGATATTGAAATAAATCTGAAAG
CGCTGACCAGACACACGCCACCCGACCTTCACACGCCCTCTCTCCCTCCC
TCCCTCTTTCCAGGTAACCCGATGTACATCGTCAAGGCATTCTATCGCCA
TCTCCGCTGGGCCACCATTGAGACGATCCACTCTCTTGCTTGTCCCTGTG
AAGTGGTGCACGGCGAAACGGACGGCATCATCCCCCTCTACCAGGGGAGG
GCGCTTGCCGCCAATTTACTCAAAGCCAACTTTCACGTCTTCAGGTCGGG
AGTTGCTTTCATCCCATCCCTCCCTCCCTCCTCTCGTGTCCTTTTTCTGC
GGCAGCACTCGGTGGCATCGTCCCTTGTGTAATTGTTATGGTCGAAGAAA
GTCATTCACCTTTGACCCCCCCCCCCCTCCCCCCCTCCCTTCCTCCTCTT
TTCAGGGAAACCGGCCACCAAGTGATGCAAGAGCGACCGGCAGAGACTGC
AGCCTTGATCATAGCAGCTGCCACAAAGTGGTCGAGGGCGAGGAGGAGGG
CGGGAGGGAAGGAGGGGAGGAGGAAGAGAACGATGTTAACGGGGAAGATG
GTGGAGGAGGTGGAGATTTCCTTCCCTCAGCGCATTGCCAAGGAGGAAGA
GGAGGACGAGCAGGAGGAGGAGGAGCACGCGGAGGAAAGGGTTGAGAGAA
GTGAAGGCGATAAGGTGACGTAG

Coding sequence (CDS) from alignment at scaffold_9:825394..827216+

>mRNA_4868 ID=mRNA_4868|Name=jgi.p|Nanoce1779_2|638954|organism=Nannochloropsis oceanica|type=CDS|length=5745bp|location=Sequence derived from alignment at scaffold_9:825394..827216+ (Nannochloropsis oceanica)
ATGGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGC
ACAAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCA
GGCCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGG
CAACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCG
TAGCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGG
GAGGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATT
CACGGAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCCT
CTCTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAGA
GCCCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATTG
TTCGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCAA
TATCCTGGTTGGACATTCTTTCGGCCTGGTCCTCCTCGCTTCTGCGTATC
ATGTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTC
AACCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGA
CGCCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAG
GTAACCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGGCC
ACCATTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCACGG
CGAAACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGCCA
ATTTACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAGTG
ATGCAAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCCAC
AAAGTGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGAGGA
AGAGAACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCTTC
CCTCAGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAGGA
GCACGCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTAGA
TGGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGCA
CAAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCAG
GCCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGGC
AACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCGT
AGCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGGG
AGGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATTC
ACGGAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCCTC
TCTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAGAG
CCCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATTGT
TCGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCAAT
ATCCTGGTTGGACATTCTTTCGGCCTGGTCCTCCTCGCTTCTGCGTATCA
TGTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTCA
ACCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGAC
GCCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAGG
TAACCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGGCCA
CCATTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCACGGC
GAAACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGCCAA
TTTACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAGTGA
TGCAAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCCACA
AAGTGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGAGGAA
GAGAACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCTTCC
CTCAGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAGGAG
CACGCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTAGAT
GGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGCAC
AAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCAGG
CCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGGCA
ACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCGTA
GCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGGGA
GGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATTCA
CGGAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCCTCT
CTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAGAGC
CCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATTGTT
CGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCAATA
TCCTGGTTGGACATTCTTTCGGCCTGGTCCTCCTCGCTTCTGCGTATCAT
GTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTCAA
CCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGACG
CCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAGGT
AACCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGGCCAC
CATTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCACGGCG
AAACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGCCAAT
TTACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAGTGAT
GCAAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCCACAA
AGTGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGAGGAAG
AGAACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCTTCCC
TCAGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAGGAGC
ACGCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTAGATG
GAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGCACA
AGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCAGGC
CAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGGCAA
CGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCGTAG
CCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGGGAG
GCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATTCAC
GGAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCCTCTC
TCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAGAGCC
CCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATTGTTC
GAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCAATAT
CCTGGTTGGACATTCTTTCGGCCTGGTCCTCCTCGCTTCTGCGTATCATG
TCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTCAAC
CTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGACGC
CCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAGGTA
ACCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGGCCACC
ATTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCACGGCGA
AACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGCCAATT
TACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAGTGATG
CAAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCCACAAA
GTGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGAGGAAGA
GAACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCTTCCCT
CAGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAGGAGCA
CGCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTAGATGG
AAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGCACAA
GCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCAGGCC
AAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGGCAAC
GGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCGTAGC
CATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGGGAGG
CGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATTCACG
GAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCCTCTCT
CGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAGAGCCC
CAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATTGTTCG
AGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCAATATC
CTGGTTGGACATTCTTTCGGCCTGGTCCTCCTCGCTTCTGCGTATCATGT
CCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTCAACC
TGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGACGCC
CACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAGGTAA
CCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGGCCACCA
TTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCACGGCGAA
ACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGCCAATTT
ACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAGTGATGC
AAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCCACAAAG
TGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGAGGAAGAG
AACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCTTCCCTC
AGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAGGAGCAC
GCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTAG

Synonyms

Publications