jgi.p|Nanoce1779_2|588147, mRNA_4863 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588147
Unique NamemRNA_4863
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length779
Alignment locationscaffold_9:808203..808981 +

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Properties
Property NameValue
TranscriptId588233
TrackFilteredModels2
ProteinId588147
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:808203..808981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588147gene_4863Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588147mRNA_4863-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4863CDS_4863Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4863 ID=mRNA_4863|Name=jgi.p|Nanoce1779_2|588147|organism=Nannochloropsis oceanica|type=mRNA|length=779bp
AAAGGAGGAATTAGTCCGAGGGGTGGAGAGAGGGATGGGACGGCTGGGAG
AGATATTCGATGAGGAGGCATTGGAAGAGGGGCTGAGAGAGGCAAGCTTA
GTGACGATTAAGGGAGGAAGGGGGGGAGGGGCGATTAAGTTGGGTGTGGA
CGAGGCCTTCACGCAGAGAGTGGGACGCGCAGTGAGGGCCACAGAGGAGG
GGAAGGCAGTGGCAAGAGCTTTGGTAGAAGACGTCAGAGCTTTACAGGCA
CAGGTGCGAAACGGGTTGGCAGTAAAATTGCAGAGTGTATTGGAGGAGCC
GTTGACAGAGGTGTGTCAGAAGATCATCGAGGCCAAATGCGCTGGAAAGG
TGTACAAGTCCGTGGGGAGGTTTCGAAAGGACGTGCACAGAGAGTGCGGG
TATTTTGTGAGGAAGCATGAGGTGGGTCGGAAGTTGTCCAAGAGGATGGT
GGCATCGGTGATCGACCAATTCATTGACACGCAGTTGCAGCCGTGTCGAG
ATGCGATTGGGCGGGAGGAACGTCGGCAGCGGTTTTGGAGGAAGGTGACG
TGGGGTGTGGGGGGAATGTTGGCATTGCTTGCGTATGCCCGCTTCTCTGA
CAAGGGGTATGGAGGGGGAGGGTTTTTGCAGCGTCCACAGGAGAGGAGGG
TAATGGGAGGGAGGAGGGTGCCTTTGGAGCTGCCGCCGGGGGGGAGACCG
CCGCCCTTGAACCCATTTGCCGCGGGGCCATGAGAGAAAAGGGGAGGACG
AAAAGAGTGGTGTAGGTGGGCATAACTGT
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protein sequence of jgi.p|Nanoce1779_2|588147

>mRNA_4863-protein ID=mRNA_4863-protein|Name=jgi.p|Nanoce1779_2|588147|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MGRLGEIFDEEALEEGLREASLVTIKGGRGGGAIKLGVDEAFTQRVGRAV
RATEEGKAVARALVEDVRALQAQVRNGLAVKLQSVLEEPLTEVCQKIIEA
KCAGKVYKSVGRFRKDVHRECGYFVRKHEVGRKLSKRMVASVIDQFIDTQ
LQPCRDAIGREERRQRFWRKVTWGVGGMLALLAYARFSDKGYGGGGFLQR
PQERRVMGGRRVPLELPPGGRPPPLNPFAAGP*
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mRNA from alignment at scaffold_9:808203..808981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4863 ID=mRNA_4863|Name=jgi.p|Nanoce1779_2|588147|organism=Nannochloropsis oceanica|type=mRNA|length=779bp|location=Sequence derived from alignment at scaffold_9:808203..808981+ (Nannochloropsis oceanica)
AAAGGAGGAATTAGTCCGAGGGGTGGAGAGAGGGATGGGACGGCTGGGAG
AGATATTCGATGAGGAGGCATTGGAAGAGGGGCTGAGAGAGGCAAGCTTA
GTGACGATTAAGGGAGGAAGGGGGGGAGGGGCGATTAAGTTGGGTGTGGA
CGAGGCCTTCACGCAGAGAGTGGGACGCGCAGTGAGGGCCACAGAGGAGG
GGAAGGCAGTGGCAAGAGCTTTGGTAGAAGACGTCAGAGCTTTACAGGCA
CAGGTGCGAAACGGGTTGGCAGTAAAATTGCAGAGTGTATTGGAGGAGCC
GTTGACAGAGGTGTGTCAGAAGATCATCGAGGCCAAATGCGCTGGAAAGG
TGTACAAGTCCGTGGGGAGGTTTCGAAAGGACGTGCACAGAGAGTGCGGG
TATTTTGTGAGGAAGCATGAGGTGGGTCGGAAGTTGTCCAAGAGGATGGT
GGCATCGGTGATCGACCAATTCATTGACACGCAGTTGCAGCCGTGTCGAG
ATGCGATTGGGCGGGAGGAACGTCGGCAGCGGTTTTGGAGGAAGGTGACG
TGGGGTGTGGGGGGAATGTTGGCATTGCTTGCGTATGCCCGCTTCTCTGA
CAAGGGGTATGGAGGGGGAGGGTTTTTGCAGCGTCCACAGGAGAGGAGGG
TAATGGGAGGGAGGAGGGTGCCTTTGGAGCTGCCGCCGGGGGGGAGACCG
CCGCCCTTGAACCCATTTGCCGCGGGGCCATGAGAGAAAAGGGGAGGACG
AAAAGAGTGGTGTAGGTGGGCATAACTGT
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Coding sequence (CDS) from alignment at scaffold_9:808203..808981+

>mRNA_4863 ID=mRNA_4863|Name=jgi.p|Nanoce1779_2|588147|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_9:808203..808981+ (Nannochloropsis oceanica)
ATGGGACGGCTGGGAGAGATATTCGATGAGGAGGCATTGGAAGAGGGGCT
GAGAGAGGCAAGCTTAGTGACGATTAAGGGAGGAAGGGGGGGAGGGGCGA
TTAAGTTGGGTGTGGACGAGGCCTTCACGCAGAGAGTGGGACGCGCAGTG
AGGGCCACAGAGGAGGGGAAGGCAGTGGCAAGAGCTTTGGTAGAAGACGT
CAGAGCTTTACAGGCACAGGTGCGAAACGGGTTGGCAGTAAAATTGCAGA
GTGTATTGGAGGAGCCGTTGACAGAGGTGTGTCAGAAGATCATCGAGGCC
AAATGCGCTGGAAAGGTGTACAAGTCCGTGGGGAGGTTTCGAAAGGACGT
GCACAGAGAGTGCGGGTATTTTGTGAGGAAGCATGAGGTGGGTCGGAAGT
TGTCCAAGAGGATGGTGGCATCGGTGATCGACCAATTCATTGACACGCAG
TTGCAGCCGTGTCGAGATGCGATTGGGCGGGAGGAACGTCGGCAGCGGTT
TTGGAGGAAGGTGACGTGGGGTGTGGGGGGAATGTTGGCATTGCTTGCGT
ATGCCCGCTTCTCTGACAAGGGGTATGGAGGGGGAGGGTTTTTGCAGCGT
CCACAGGAGAGGAGGGTAATGGGAGGGAGGAGGGTGCCTTTGGAGCTGCC
GCCGGGGGGGAGACCGCCGCCCTTGAACCCATTTGCCGCGGGGCCATGA
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Synonyms
Publications