jgi.p|Nanoce1779_2|588146, mRNA_4862 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588146
Unique NamemRNA_4862
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length922
Alignment locationscaffold_9:807306..808227 -

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Properties
Property NameValue
TranscriptId588232
TrackFilteredModels2
ProteinId588146
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:807306..808227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588146gene_4862Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588146mRNA_4862-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4862CDS_4862Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4862 ID=mRNA_4862|Name=jgi.p|Nanoce1779_2|588146|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
CACCCCTCGGACTAATTCCTCCTTTACTCCCGCACAAAACGCCCTCAATC
TCTCACTGTTCCTCTTATCGAGCCCTGCGCGTACCGACTCAGCTTCAACC
TTCAGTGCAGTCATGTGCAACGGCAGCTGCTTCTCTCCACGGAATTTTTT
TGTGGTCTCTGCAAAGCGCGCCAACATCCGAGTTTCCGCGTGCGCATGCA
GCAACTGCACCCTCTCCGGCAAAAACACACCAGGAGGGAGCGACACACCA
CTTTCTTCCTCCACCTCACCCTCCTCCTTGACCTCATCCTCCCTCCCTCC
CTCCTCCATCTCCTCCTCATATCGAACCAGAGCCTCCCTTCGCGCCCTTT
CTAGAAACGACTCCAGCGCAAGTCCGTTGGCAAGCCGCAGCTCATTGTCC
CTCGCTTTGAGCTTCTCCCCCACCTCCCTCTCCGCCCGAGCATACAACCC
TCTTCGCTCGCTTCCTCCTGCACTCTCCTTGAAGACCCCTGTTATTCTTT
CGAAGCTTGCCAACGCTTCTTTTCCCCTCGTAGCCAGCCAGCCCTCTAAG
GTCTTCTGGGTCATCGGCCAACCTCCTGCGTTTCCTCGCATCAATCGCAC
CCCTGCCTCCCTCTCTTCTTCTCCCACTTCCTCCCCTACTTCCTTTAAAA
ACACCCGAACGCTTTCTTCCTGCTCTGCTGCTGCTGTTGCTGCTGCTTCT
GCTATACCTTTTTCGGCGTCCACCGAAGCGAGGAACAGAGAGTGGGGCAG
GCCGACCAGCAGCTTCTGCAGCAACATGTAGGCGTGTCGAGTAGCAGCAC
CAACAGCACGGTGGAGCTCAGATGATGTCAGAGGACGAGGACGAGGACGA
TGAAGAGAGGGAGGAAAGATGTTCGCCTCCTGCGCTTCCACCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGC
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protein sequence of jgi.p|Nanoce1779_2|588146

>mRNA_4862-protein ID=mRNA_4862-protein|Name=jgi.p|Nanoce1779_2|588146|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MCNGSCFSPRNFFVVSAKRANIRVSACACSNCTLSGKNTPGGSDTPLSSS
TSPSSLTSSSLPPSSISSSYRTRASLRALSRNDSSASPLASRSSLSLALS
FSPTSLSARAYNPLRSLPPALSLKTPVILSKLANASFPLVASQPSKVFWV
IGQPPAFPRINRTPASLSSSPTSSPTSFKNTRTLSSCSAAAVAAASAIPF
SASTEARNREWGRPTSSFCSNM*
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mRNA from alignment at scaffold_9:807306..808227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4862 ID=mRNA_4862|Name=jgi.p|Nanoce1779_2|588146|organism=Nannochloropsis oceanica|type=mRNA|length=922bp|location=Sequence derived from alignment at scaffold_9:807306..808227- (Nannochloropsis oceanica)
CACCCCTCGGACTAATTCCTCCTTTACTCCCGCACAAAACGCCCTCAATC
TCTCACTGTTCCTCTTATCGAGCCCTGCGCGTACCGACTCAGCTTCAACC
TTCAGTGCAGTCATGTGCAACGGCAGCTGCTTCTCTCCACGGAATTTTTT
TGTGGTCTCTGCAAAGCGCGCCAACATCCGAGTTTCCGCGTGCGCATGCA
GCAACTGCACCCTCTCCGGCAAAAACACACCAGGAGGGAGCGACACACCA
CTTTCTTCCTCCACCTCACCCTCCTCCTTGACCTCATCCTCCCTCCCTCC
CTCCTCCATCTCCTCCTCATATCGAACCAGAGCCTCCCTTCGCGCCCTTT
CTAGAAACGACTCCAGCGCAAGTCCGTTGGCAAGCCGCAGCTCATTGTCC
CTCGCTTTGAGCTTCTCCCCCACCTCCCTCTCCGCCCGAGCATACAACCC
TCTTCGCTCGCTTCCTCCTGCACTCTCCTTGAAGACCCCTGTTATTCTTT
CGAAGCTTGCCAACGCTTCTTTTCCCCTCGTAGCCAGCCAGCCCTCTAAG
GTCTTCTGGGTCATCGGCCAACCTCCTGCGTTTCCTCGCATCAATCGCAC
CCCTGCCTCCCTCTCTTCTTCTCCCACTTCCTCCCCTACTTCCTTTAAAA
ACACCCGAACGCTTTCTTCCTGCTCTGCTGCTGCTGTTGCTGCTGCTTCT
GCTATACCTTTTTCGGCGTCCACCGAAGCGAGGAACAGAGAGTGGGGCAG
GCCGACCAGCAGCTTCTGCAGCAACATGTAGGCGTGTCGAGTAGCAGCAC
CAACAGCACGGTGGAGCTCAGATGATGTCAGAGGACGAGGACGAGGACGA
TGAAGAGAGGGAGGAAAGATGTTCGCCTCCTGCGCTTCCACCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGC
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Coding sequence (CDS) from alignment at scaffold_9:807306..808227-

>mRNA_4862 ID=mRNA_4862|Name=jgi.p|Nanoce1779_2|588146|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_9:807306..808227- (Nannochloropsis oceanica)
ATGTGCAACGGCAGCTGCTTCTCTCCACGGAATTTTTTTGTGGTCTCTGC
AAAGCGCGCCAACATCCGAGTTTCCGCGTGCGCATGCAGCAACTGCACCC
TCTCCGGCAAAAACACACCAGGAGGGAGCGACACACCACTTTCTTCCTCC
ACCTCACCCTCCTCCTTGACCTCATCCTCCCTCCCTCCCTCCTCCATCTC
CTCCTCATATCGAACCAGAGCCTCCCTTCGCGCCCTTTCTAGAAACGACT
CCAGCGCAAGTCCGTTGGCAAGCCGCAGCTCATTGTCCCTCGCTTTGAGC
TTCTCCCCCACCTCCCTCTCCGCCCGAGCATACAACCCTCTTCGCTCGCT
TCCTCCTGCACTCTCCTTGAAGACCCCTGTTATTCTTTCGAAGCTTGCCA
ACGCTTCTTTTCCCCTCGTAGCCAGCCAGCCCTCTAAGGTCTTCTGGGTC
ATCGGCCAACCTCCTGCGTTTCCTCGCATCAATCGCACCCCTGCCTCCCT
CTCTTCTTCTCCCACTTCCTCCCCTACTTCCTTTAAAAACACCCGAACGC
TTTCTTCCTGCTCTGCTGCTGCTGTTGCTGCTGCTTCTGCTATACCTTTT
TCGGCGTCCACCGAAGCGAGGAACAGAGAGTGGGGCAGGCCGACCAGCAG
CTTCTGCAGCAACATGTAG
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Synonyms
Publications