jgi.p|Nanoce1779_2|588145, mRNA_4861 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588145
Unique Name	mRNA_4861
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1698
Alignment location	scaffold_9:805417..807114 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588231
Track	FilteredModels2
ProteinId	588145

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:805417..807114 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588145	gene_4861	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588145	mRNA_4861-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4861	CDS_4861	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:805417..807114+
coding sequence from alignment at scaffold_9:805417..807114+

mRNA sequence

>mRNA_4861 ID=mRNA_4861|Name=jgi.p|Nanoce1779_2|588145|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp
GACTCCAGCGACGAGAAGGGTGACGGCAAGAGTAGCCACCACAAGACGTC
CTCTCCTGGCCACCGTGCCTTGAGTGAGGAGTGTGCACGGGAGAAAACGT
GTTAGTCCCCCCTTTCCGAAGACCTCCCATACCCTCCTATCCCGTAGATA
TAGCATTATCAAGCATAATCGCCACGCCCGCCCGCCGATCAAGAGCCCAA
ATGAAACACATATTCGTCCTACCCCTCCGCCTCTCAAATCTTGTCACTCT
CCTCCTCCTTGTGCATGTCCTTCTCCATCCTTGCCACACCCGCGAGACCT
CTTCAGGGGAAGCTCGTCAGCTATTGCGGCCGACCGATGAGAGGAATCGA
ACATCGCTCGAAGTGGTGGAGGAGACTTTGGCATTTATCGAAACATTACA
AGGGCCTGTGGCCGTTGTGTCAATCGTAGGGCCTTATCACACCGGCAAGA
GCTTTTTGTTGAATCAGGTGGTGCGGTCCATCGCAATTGCGGCTGGAAGG
AGCGTTGGTGACGATACCGTAGTAGCAATAGGAGACGAAAAGGAGAAGTT
GTGGCAAGATGAAAGTCTGGCTCCTTCAGACGCGGGACAGGAAGTGTTTC
AAGTGGGTCGGAATGTCGACCCAGAGACAAGCGGTGTGTGGATATACCAC
AAGTCTTTGCTGCTACCCCCTTCCCCCATCCTCCCCTCCTCCTCCCCCCC
CGCCACGGACGGCGGACATGCACCCCAGCATCAGTGCCTGCACGAGCAGG
AGCAGCAGGTGCCCCGGCGTGTAGACGTCCTCTTCCTCGATACTGAGGGG
TTTAGTGTCTCCAATGTAACAGAAAGCTATGACGCCAAGGTCTTTGCCGC
CAGCACTCTCCTCTCCTCCCTGCTCCTGTACAACTCGATGCATGTCCTGC
ATGCCAATGAATTGGAGTACCTAGACTTGTTAGTCCATAACACCCAGCTC
TTCTCAATCAAGACGGCGCTGAAGCAACAGGAGGAGGAGAGGAAGACAGG
AGGGAAGGAGGGAGGAAGGGGAACATCGCCGGAACGTGCCCCGTTTTCTT
TGTCTCGAGGGGGAATCGAGGATGGCACGGCGGCGATGTCGCTGAGTGAT
CTTTTGAGCCTTCCACCGATGCTCATGACGGTGAGGATGGGAGGGAAGGG
GGAGGGCGGGAACGGGAAGGGTACCGGTCTCGCAGGCCTCGCTTTGTTTA
CACTCCCTTTTCGAGTCATCCCTCCTTCCATTCCTTCCCCCTGCCCCTTC
TATCCCATCAAACCTAAACCAAGCGCCCTACCCCTCGTTTCCCTCCTTTC
GTTGTGTCCCTCCCCTCCTGCTGTAGGTCCAAGCTTTCACCATGAACCTC
GCCGAGGGCGACGCTGACTGCACCTCCTGGCTAAGCCGTCTGCTCTCCGC
CCCTGTTCGTAGCAGCATGGGACGGGACATCTTTCCCCCTTCCTCGTTCC
CTTCTTCCTCCTCATCCACCACTCTCCAGCACATGGGCATAGGCACCCTC
TTTCCCTCCGTCTCCTGCCAGACGCTATTCCTCCCCGCCACCTCCCGCGG
GCACCTGGCCAACTTGTCTTCCCTCCCGCCCTCTGCCATGACCAAGGATT
TCCTCCGTGACCTCGCCTCCCTCGATACAGCCATCCTCACCCACCTCCAG
CCCACGCTCTGGCCCACCAACAGTAGCAGCAGCAGCAGCAGCAGCAGC

protein sequence of jgi.p|Nanoce1779_2|588145

>mRNA_4861-protein ID=mRNA_4861-protein|Name=jgi.p|Nanoce1779_2|588145|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MKHIFVLPLRLSNLVTLLLLVHVLLHPCHTRETSSGEARQLLRPTDERNR
TSLEVVEETLAFIETLQGPVAVVSIVGPYHTGKSFLLNQVVRSIAIAAGR
SVGDDTVVAIGDEKEKLWQDESLAPSDAGQEVFQVGRNVDPETSGVWIYH
KSLLLPPSPILPSSSPPATDGGHAPQHQCLHEQEQQVPRRVDVLFLDTEG
FSVSNVTESYDAKVFAASTLLSSLLLYNSMHVLHANELEYLDLLVHNTQL
FSIKTALKQQEEERKTGGKEGGRGTSPERAPFSLSRGGIEDGTAAMSLSD
LLSLPPMLMTVRMGGKGEGGNGKGTGLAGLALFTLPFRVIPPSIPSPCPF
YPIKPKPSALPLVSLLSLCPSPPAVGPSFHHEPRRGRR*

mRNA from alignment at scaffold_9:805417..807114+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4861 ID=mRNA_4861|Name=jgi.p|Nanoce1779_2|588145|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp|location=Sequence derived from alignment at scaffold_9:805417..807114+ (Nannochloropsis oceanica)
GACTCCAGCGACGAGAAGGGTGACGGCAAGAGTAGCCACCACAAGACGTC
CTCTCCTGGCCACCGTGCCTTGAGTGAGGAGTGTGCACGGGAGAAAACGT
GTTAGTCCCCCCTTTCCGAAGACCTCCCATACCCTCCTATCCCGTAGATA
TAGCATTATCAAGCATAATCGCCACGCCCGCCCGCCGATCAAGAGCCCAA
ATGAAACACATATTCGTCCTACCCCTCCGCCTCTCAAATCTTGTCACTCT
CCTCCTCCTTGTGCATGTCCTTCTCCATCCTTGCCACACCCGCGAGACCT
CTTCAGGGGAAGCTCGTCAGCTATTGCGGCCGACCGATGAGAGGAATCGA
ACATCGCTCGAAGTGGTGGAGGAGACTTTGGCATTTATCGAAACATTACA
AGGGCCTGTGGCCGTTGTGTCAATCGTAGGGCCTTATCACACCGGCAAGA
GCTTTTTGTTGAATCAGGTGGTGCGGTCCATCGCAATTGCGGCTGGAAGG
AGCGTTGGTGACGATACCGTAGTAGCAATAGGAGACGAAAAGGAGAAGTT
GTGGCAAGATGAAAGTCTGGCTCCTTCAGACGCGGGACAGGAAGTGTTTC
AAGTGGGTCGGAATGTCGACCCAGAGACAAGCGGTGTGTGGATATACCAC
AAGTCTTTGCTGCTACCCCCTTCCCCCATCCTCCCCTCCTCCTCCCCCCC
CGCCACGGACGGCGGACATGCACCCCAGCATCAGTGCCTGCACGAGCAGG
AGCAGCAGGTGCCCCGGCGTGTAGACGTCCTCTTCCTCGATACTGAGGGG
TTTAGTGTCTCCAATGTAACAGAAAGCTATGACGCCAAGGTCTTTGCCGC
CAGCACTCTCCTCTCCTCCCTGCTCCTGTACAACTCGATGCATGTCCTGC
ATGCCAATGAATTGGAGTACCTAGACTTGTTAGTCCATAACACCCAGCTC
TTCTCAATCAAGACGGCGCTGAAGCAACAGGAGGAGGAGAGGAAGACAGG
AGGGAAGGAGGGAGGAAGGGGAACATCGCCGGAACGTGCCCCGTTTTCTT
TGTCTCGAGGGGGAATCGAGGATGGCACGGCGGCGATGTCGCTGAGTGAT
CTTTTGAGCCTTCCACCGATGCTCATGACGGTGAGGATGGGAGGGAAGGG
GGAGGGCGGGAACGGGAAGGGTACCGGTCTCGCAGGCCTCGCTTTGTTTA
CACTCCCTTTTCGAGTCATCCCTCCTTCCATTCCTTCCCCCTGCCCCTTC
TATCCCATCAAACCTAAACCAAGCGCCCTACCCCTCGTTTCCCTCCTTTC
GTTGTGTCCCTCCCCTCCTGCTGTAGGTCCAAGCTTTCACCATGAACCTC
GCCGAGGGCGACGCTGACTGCACCTCCTGGCTAAGCCGTCTGCTCTCCGC
CCCTGTTCGTAGCAGCATGGGACGGGACATCTTTCCCCCTTCCTCGTTCC
CTTCTTCCTCCTCATCCACCACTCTCCAGCACATGGGCATAGGCACCCTC
TTTCCCTCCGTCTCCTGCCAGACGCTATTCCTCCCCGCCACCTCCCGCGG
GCACCTGGCCAACTTGTCTTCCCTCCCGCCCTCTGCCATGACCAAGGATT
TCCTCCGTGACCTCGCCTCCCTCGATACAGCCATCCTCACCCACCTCCAG
CCCACGCTCTGGCCCACCAACAGTAGCAGCAGCAGCAGCAGCAGCAGC

Coding sequence (CDS) from alignment at scaffold_9:805417..807114+

>mRNA_4861 ID=mRNA_4861|Name=jgi.p|Nanoce1779_2|588145|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_9:805417..807114+ (Nannochloropsis oceanica)
ATGAAACACATATTCGTCCTACCCCTCCGCCTCTCAAATCTTGTCACTCT
CCTCCTCCTTGTGCATGTCCTTCTCCATCCTTGCCACACCCGCGAGACCT
CTTCAGGGGAAGCTCGTCAGCTATTGCGGCCGACCGATGAGAGGAATCGA
ACATCGCTCGAAGTGGTGGAGGAGACTTTGGCATTTATCGAAACATTACA
AGGGCCTGTGGCCGTTGTGTCAATCGTAGGGCCTTATCACACCGGCAAGA
GCTTTTTGTTGAATCAGGTGGTGCGGTCCATCGCAATTGCGGCTGGAAGG
AGCGTTGGTGACGATACCGTAGTAGCAATAGGAGACGAAAAGGAGAAGTT
GTGGCAAGATGAAAGTCTGGCTCCTTCAGACGCGGGACAGGAAGTGTTTC
AAGTGGGTCGGAATGTCGACCCAGAGACAAGCGGTGTGTGGATATACCAC
AAGTCTTTGCTGCTACCCCCTTCCCCCATCCTCCCCTCCTCCTCCCCCCC
CGCCACGGACGGCGGACATGCACCCCAGCATCAGTGCCTGCACGAGCAGG
AGCAGCAGGTGCCCCGGCGTGTAGACGTCCTCTTCCTCGATACTGAGGGG
TTTAGTGTCTCCAATGTAACAGAAAGCTATGACGCCAAGGTCTTTGCCGC
CAGCACTCTCCTCTCCTCCCTGCTCCTGTACAACTCGATGCATGTCCTGC
ATGCCAATGAATTGGAGTACCTAGACTTGTTAGTCCATAACACCCAGCTC
TTCTCAATCAAGACGGCGCTGAAGCAACAGGAGGAGGAGAGGAAGACAGG
AGGGAAGGAGGGAGGAAGGGGAACATCGCCGGAACGTGCCCCGTTTTCTT
TGTCTCGAGGGGGAATCGAGGATGGCACGGCGGCGATGTCGCTGAGTGAT
CTTTTGAGCCTTCCACCGATGCTCATGACGGTGAGGATGGGAGGGAAGGG
GGAGGGCGGGAACGGGAAGGGTACCGGTCTCGCAGGCCTCGCTTTGTTTA
CACTCCCTTTTCGAGTCATCCCTCCTTCCATTCCTTCCCCCTGCCCCTTC
TATCCCATCAAACCTAAACCAAGCGCCCTACCCCTCGTTTCCCTCCTTTC
GTTGTGTCCCTCCCCTCCTGCTGTAGGTCCAAGCTTTCACCATGAACCTC
GCCGAGGGCGACGCTGA

Synonyms

Publications