jgi.p|Nanoce1779_2|577446, mRNA_486 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577446
Unique Name	mRNA_486
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1613
Alignment location	scaffold_3:1176322..1178200 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577532
Track	FilteredModels2
ProteinId	577446

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1176322..1178200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577446	gene_486	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577446	mRNA_486-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_486	CDS_486	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1176322..1178200+
coding sequence from alignment at scaffold_3:1176322..1178200+

mRNA sequence

>mRNA_486 ID=mRNA_486|Name=jgi.p|Nanoce1779_2|577446|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
CAGCAGTCCACGCAACAGCAGCAATAACAGCAGCATGGCCGCATCCGCCT
TTGCCGCTCGCAAGGGCCTCTTTATCGTGGGTGCAAAGCGCACGCCCTTT
GGTGCATTTGGTGGCAAGCTTAAGTCCTTCTCCGCCACTGAGCTCGCCTA
CCTGGCCTCAAAAGGCGCTCTACTCCAAGCCAAAATCGACCCCAAGCACG
TGGATGTAGTCTATGCCGGGAATGTCATCCAATCTTCCAACGATGCCTGT
TATCTGTCTCGTCACGTCGGTCTCAAGGCAGGAGTACCCCAACATGTGCC
AGCCCTGACCATCAACCGTCTCTGCGGCAGCGGCTTTGAGACAGTAGCGA
TGGGTTGCGAGGCTATGGAGCTCGGCCAGGCCTCCGTGGCCTTGGCAGCA
GGGACAGAAAACATGTCCGCGGCTCCCTTTGTCGTGGACGGGAATAGCGT
GAGGTGGGGCACGCCCCTGGGGAAAGGCCCGGAAATGAAGGACTCGCTTT
GGTCGGGATTAACAGACTCCTTGGCCGGTACGCCGATGGGGATTACCGCA
GAAAATTTGGGGACGAAGTACGGGATTACGAGGGGGGAGTGCGATGAGTA
CGGCGTGAGGTCTCAGCAGCTGTGGGCCAAGGCAAAGGAGGGGGGGAAAT
TTGACGCAGAGGTCGTCCCTGTGGAAGTGAAGACTAAGAAGGGGATCGAG
TTGTTCACGACTGACGAGCACCCGCGGCCGCAGGTGGATTTGGCCAAGAT
CTCGAAACTGTCCCCTGTGTTTAAGAAGGAGGGGCTAGTCACGGCGGCGA
ATGCAAGTGGCATTGCCGACGGTGCCGGTGCATTGGTGTTGGCGACCGAA
GAGGTTATCAAAGCTCATGGTCTGATACCTCTTGCGAGGATTGTGTCGTG
GGCGAGGGTGGGATGTGACCCCAGCATTATGGGCATAGGGCCCGTAGAGG
CGATCAAGGGGGCGTTGAGTGTAGCGGGGTTGACGTTGAACGACTTGGAT
CGGGTGGAGATCAACGAGGCGTTCGCCGCACAGTTTTTGGCGTGTCGTAA
GGAGTTGGGATTGGACATGGCCAAGACGAATGTGCATGGGGGGGCGATCG
CGTTGGGCCATCCATTGGCAGCGTCGGGATCCAGGATTCTTGCCAGTCTG
GCCAATGAGTTGAAGGAGGGAGGGGGCAAAGGGTATGCCATGGGGAGTGC
GTGTATTGGGGGTGGGCAGGGAATAGCGGTGTTGTTGCAGGGGGTTTAAT
TAAGGATGGAGGGAATAAGGGAAGGAGGGAGGGACGGAGGCTTTGTACTG
ATTTTGAATGGCAGCGGTTGTAAGCACAATTTACCGAAGTCAGAAGGCAG
AAGAAAATGTGGGGGAATGGTTTTCAGTAATTTTACACTTGAAAGGAAAG
GGAAAAAAAAAATTATGGATTATGGGGGAGTTGGACTCGTAGGAAAGTAT
GGTGCGCGCAGCTTCGCATTTTTGTCACGAGGGGAGGTAAAGATGTAGCA
TGACTGACGATGGTGACAGCGTGAGGAGACTAAGACACTATCGCACAGAA
AGTAGAAAACCAGCAGAAAGGGAGGGGGGGGGGGGGGTAGGGGAGAAAGA
AGAGATTATGAAA

protein sequence of jgi.p|Nanoce1779_2|577446

>mRNA_486-protein ID=mRNA_486-protein|Name=jgi.p|Nanoce1779_2|577446|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MAASAFAARKGLFIVGAKRTPFGAFGGKLKSFSATELAYLASKGALLQAK
IDPKHVDVVYAGNVIQSSNDACYLSRHVGLKAGVPQHVPALTINRLCGSG
FETVAMGCEAMELGQASVALAAGTENMSAAPFVVDGNSVRWGTPLGKGPE
MKDSLWSGLTDSLAGTPMGITAENLGTKYGITRGECDEYGVRSQQLWAKA
KEGGKFDAEVVPVEVKTKKGIELFTTDEHPRPQVDLAKISKLSPVFKKEG
LVTAANASGIADGAGALVLATEEVIKAHGLIPLARIVSWARVGCDPSIMG
IGPVEAIKGALSVAGLTLNDLDRVEINEAFAAQFLACRKELGLDMAKTNV
HGGAIALGHPLAASGSRILASLANELKEGGGKGYAMGSACIGGGQGIAVL
LQGV*

mRNA from alignment at scaffold_3:1176322..1178200+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_486 ID=mRNA_486|Name=jgi.p|Nanoce1779_2|577446|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at scaffold_3:1176322..1178200+ (Nannochloropsis oceanica)
CAGCAGTCCACGCAACAGCAGCAATAACAGCAGCATGGCCGCATCCGCCT
TTGCCGCTCGCAAGGGCCTCTTTATCGTGGGTGCAAAGCGCACGCCCTTT
GGTACGTTCTTGAATTTCATTGTATCGTCATTCTTGAACCAGGACTGAGC
TAACTTATGCAAGCAAGCCATCCCCTCAAGCTGTGCCGTCCGTATGCCTT
CAATCTGCTCCTTCATCCATCAAGACTGCATGCTTCCTCTCGCGTCTCAA
TTTTGCTCTTGTTTCTCACCCTCTCGCATCTCAATTTTGCTCTTGTTTCT
CATCCAGGCTTTGTATTCTATCAGCACAGCACTTGCCTCGGCCTCACCAT
CATCCTTCCCCTCACAGGTGCATTTGGTGGCAAGCTTAAGTCCTTCTCCG
CCACTGAGCTCGCCTACCTGGCCTCAAAAGGCGCTCTACTCCAAGCCAAA
ATCGACCCCAAGCACGTGGATGTAGTCTATGCCGGGAATGTCATCCAATC
TTCCAACGATGCCTGTTATCTGTCTCGTCACGTCGGTCTCAAGGCAGGAG
TACCCCAACATGTGCCAGCCCTGACCATCAACCGTCTCTGCGGCAGCGGC
TTTGAGACAGTAGCGATGGGTTGCGAGGCTATGGAGCTCGGCCAGGCCTC
CGTGGCCTTGGCAGCAGGGACAGAAAACATGTCCGCGGCTCCCTTTGTCG
TGGACGGGAATAGCGTGAGGTGGGGCACGCCCCTGGGGAAAGGCCCGGAA
ATGAAGGACTCGCTTTGGTCGGGATTAACAGACTCCTTGGCCGGTACGCC
GATGGGGATTACCGCAGAAAATTTGGGGACGAAGTACGGGATTACGAGGG
GGGAGTGCGATGAGTACGGCGTGAGGTCTCAGCAGCTGTGGGCCAAGGCA
AAGGAGGGGGGGAAATTTGACGCAGAGGTCGTCCCTGTGGAAGTGAAGAC
TAAGAAGGGGATCGAGTTGTTCACGACTGACGAGCACCCGCGGCCGCAGG
TGGATTTGGCCAAGATCTCGAAACTGTCCCCTGTGTTTAAGAAGGAGGGG
CTAGTCACGGCGGCGAATGCAAGTGGCATTGCCGACGGTGCCGGTGCATT
GGTGTTGGCGACCGAAGAGGTTATCAAAGCTCATGGTCTGATACCTCTTG
CGAGGATTGTGTCGTGGGCGAGGGTGGGATGTGACCCCAGCATTATGGGC
ATAGGGCCCGTAGAGGCGATCAAGGGGGCGTTGAGTGTAGCGGGGTTGAC
GTTGAACGACTTGGATCGGGTGGAGATCAACGAGGCGTTCGCCGCACAGT
TTTTGGCGTGTCGTAAGGAGTTGGGATTGGACATGGCCAAGACGAATGTG
CATGGGGGGGCGATCGCGTTGGGCCATCCATTGGCAGCGTCGGGATCCAG
GATTCTTGCCAGTCTGGCCAATGAGTTGAAGGAGGGAGGGGGCAAAGGGT
ATGCCATGGGGAGTGCGTGTATTGGGGGTGGGCAGGGAATAGCGGTGTTG
TTGCAGGGGGTTTAATTAAGGATGGAGGGAATAAGGGAAGGAGGGAGGGA
CGGAGGCTTTGTACTGATTTTGAATGGCAGCGGTTGTAAGCACAATTTAC
CGAAGTCAGAAGGCAGAAGAAAATGTGGGGGAATGGTTTTCAGTAATTTT
ACACTTGAAAGGAAAGGGAAAAAAAAAATTATGGATTATGGGGGAGTTGG
ACTCGTAGGAAAGTATGGTGCGCGCAGCTTCGCATTTTTGTCACGAGGGG
AGGTAAAGATGTAGCATGACTGACGATGGTGACAGCGTGAGGAGACTAAG
ACACTATCGCACAGAAAGTAGAAAACCAGCAGAAAGGGAGGGGGGGGGGG
GGGTAGGGGAGAAAGAAGAGATTATGAAA

Coding sequence (CDS) from alignment at scaffold_3:1176322..1178200+

>mRNA_486 ID=mRNA_486|Name=jgi.p|Nanoce1779_2|577446|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_3:1176322..1178200+ (Nannochloropsis oceanica)
ATGGCCGCATCCGCCTTTGCCGCTCGCAAGGGCCTCTTTATCGTGGGTGC
AAAGCGCACGCCCTTTGGTGCATTTGGTGGCAAGCTTAAGTCCTTCTCCG
CCACTGAGCTCGCCTACCTGGCCTCAAAAGGCGCTCTACTCCAAGCCAAA
ATCGACCCCAAGCACGTGGATGTAGTCTATGCCGGGAATGTCATCCAATC
TTCCAACGATGCCTGTTATCTGTCTCGTCACGTCGGTCTCAAGGCAGGAG
TACCCCAACATGTGCCAGCCCTGACCATCAACCGTCTCTGCGGCAGCGGC
TTTGAGACAGTAGCGATGGGTTGCGAGGCTATGGAGCTCGGCCAGGCCTC
CGTGGCCTTGGCAGCAGGGACAGAAAACATGTCCGCGGCTCCCTTTGTCG
TGGACGGGAATAGCGTGAGGTGGGGCACGCCCCTGGGGAAAGGCCCGGAA
ATGAAGGACTCGCTTTGGTCGGGATTAACAGACTCCTTGGCCGGTACGCC
GATGGGGATTACCGCAGAAAATTTGGGGACGAAGTACGGGATTACGAGGG
GGGAGTGCGATGAGTACGGCGTGAGGTCTCAGCAGCTGTGGGCCAAGGCA
AAGGAGGGGGGGAAATTTGACGCAGAGGTCGTCCCTGTGGAAGTGAAGAC
TAAGAAGGGGATCGAGTTGTTCACGACTGACGAGCACCCGCGGCCGCAGG
TGGATTTGGCCAAGATCTCGAAACTGTCCCCTGTGTTTAAGAAGGAGGGG
CTAGTCACGGCGGCGAATGCAAGTGGCATTGCCGACGGTGCCGGTGCATT
GGTGTTGGCGACCGAAGAGGTTATCAAAGCTCATGGTCTGATACCTCTTG
CGAGGATTGTGTCGTGGGCGAGGGTGGGATGTGACCCCAGCATTATGGGC
ATAGGGCCCGTAGAGGCGATCAAGGGGGCGTTGAGTGTAGCGGGGTTGAC
GTTGAACGACTTGGATCGGGTGGAGATCAACGAGGCGTTCGCCGCACAGT
TTTTGGCGTGTCGTAAGGAGTTGGGATTGGACATGGCCAAGACGAATGTG
CATGGGGGGGCGATCGCGTTGGGCCATCCATTGGCAGCGTCGGGATCCAG
GATTCTTGCCAGTCTGGCCAATGAGTTGAAGGAGGGAGGGGGCAAAGGGT
ATGCCATGGGGAGTGCGTGTATTGGGGGTGGGCAGGGAATAGCGGTGTTG
TTGCAGGGGGTTTAAATGGCCGCATCCGCCTTTGCCGCTCGCAAGGGCCT
CTTTATCGTGGGTGCAAAGCGCACGCCCTTTGGTGCATTTGGTGGCAAGC
TTAAGTCCTTCTCCGCCACTGAGCTCGCCTACCTGGCCTCAAAAGGCGCT
CTACTCCAAGCCAAAATCGACCCCAAGCACGTGGATGTAGTCTATGCCGG
GAATGTCATCCAATCTTCCAACGATGCCTGTTATCTGTCTCGTCACGTCG
GTCTCAAGGCAGGAGTACCCCAACATGTGCCAGCCCTGACCATCAACCGT
CTCTGCGGCAGCGGCTTTGAGACAGTAGCGATGGGTTGCGAGGCTATGGA
GCTCGGCCAGGCCTCCGTGGCCTTGGCAGCAGGGACAGAAAACATGTCCG
CGGCTCCCTTTGTCGTGGACGGGAATAGCGTGAGGTGGGGCACGCCCCTG
GGGAAAGGCCCGGAAATGAAGGACTCGCTTTGGTCGGGATTAACAGACTC
CTTGGCCGGTACGCCGATGGGGATTACCGCAGAAAATTTGGGGACGAAGT
ACGGGATTACGAGGGGGGAGTGCGATGAGTACGGCGTGAGGTCTCAGCAG
CTGTGGGCCAAGGCAAAGGAGGGGGGGAAATTTGACGCAGAGGTCGTCCC
TGTGGAAGTGAAGACTAAGAAGGGGATCGAGTTGTTCACGACTGACGAGC
ACCCGCGGCCGCAGGTGGATTTGGCCAAGATCTCGAAACTGTCCCCTGTG
TTTAAGAAGGAGGGGCTAGTCACGGCGGCGAATGCAAGTGGCATTGCCGA
CGGTGCCGGTGCATTGGTGTTGGCGACCGAAGAGGTTATCAAAGCTCATG
GTCTGATACCTCTTGCGAGGATTGTGTCGTGGGCGAGGGTGGGATGTGAC
CCCAGCATTATGGGCATAGGGCCCGTAGAGGCGATCAAGGGGGCGTTGAG
TGTAGCGGGGTTGACGTTGAACGACTTGGATCGGGTGGAGATCAACGAGG
CGTTCGCCGCACAGTTTTTGGCGTGTCGTAAGGAGTTGGGATTGGACATG
GCCAAGACGAATGTGCATGGGGGGGCGATCGCGTTGGGCCATCCATTGGC
AGCGTCGGGATCCAGGATTCTTGCCAGTCTGGCCAATGAGTTGAAGGAGG
GAGGGGGCAAAGGGTATGCCATGGGGAGTGCGTGTATTGGGGGTGGGCAG
GGAATAGCGGTGTTGTTGCAGGGGGTTTAA

Synonyms

Publications