jgi.p|Nanoce1779_2|588129, mRNA_4858 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588129
Unique NamemRNA_4858
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1217
Alignment locationscaffold_9:789873..791089 -

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Properties
Property NameValue
TranscriptId588215
TrackFilteredModels2
ProteinId588129
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:789873..791089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588129gene_4858Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588129mRNA_4858-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4858CDS_4858Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4858 ID=mRNA_4858|Name=jgi.p|Nanoce1779_2|588129|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp
ACAGTTCCCACCAACCATGAAGCAGGGTGCAATGCGTGCGGCTCCTGCAG
GAGACCAGCCAGTCCCTTCGGCCGCTGTGGTCCGGCGGCGCCTGACCCGT
TTCGCCCGTCTGCCCGAGCGCATTGCGTTGTGCATCGATGTGAGCCCGGA
AATGGGACAGCCCTGGTCCGCCTCGTCGCCTTTGCCCACACGCCTCGATG
TCCTTAAGCAAGCCCTCACCGTTTTCTTGCACATCAAATCGCTTTTAAAC
CCCCGACATGAGTTTTCCCTTGTCACCGTGGACGAGCAAGAGAGCCGCGT
CGTCCTCCCTTTTTCCGTTGCTTTACCTGAAATCTACCGGACGCTCAGTA
ATATAACCCCCGTCGGCACGTGGCCTCCTGCTGCTCCTGCTGCTGATGCT
GTTACTGATCCTATTGGTGCTACGCCTACTGCTAATGGAATCAATTTATC
ACATCTCCTCGGCAACACCCTCCCATCCTTGCTTTCAAAATACTTGACAC
ACAACAGAGACAGCAGCTACGACAACCCTGGAACCCCCTCCTCCTCTTCC
TCGCAACCGGCCCTCGCCCGTGCGATTCTCTTCATGGGCACCTCCTACGC
CTTGCCCCTCCTTCCCCAACCCAGTGTCGTCCAAGCACTCTTTGCCAACG
ATAGCTTCTTCTTCGACATGATGTACCTACATGCACGTAAGGCTTCTCCT
CCTGTCCCTCTCACTCCTCCTCCCCCTTCTTCCTCCACGACCACCGAGGT
GGTGCTAGTGGATTTGGCCGACGACCAAGACGACGTAGCCGTCGTCCAAG
CACCTGCAGCAGCTCAAGCCCTTCCTCCCTCCATTCTTCCTCCGCGTATT
CGCCGCAGCGCCGAGATCTGGAACGCCTGTCTCGATCTGCTCGTTGACCA
TCACCCTTTCTTGCCCGAGTCCAGCTACTGCTTCTCCGTCTTGTGAGTTA
CCCGTCCCCCCCTCCCTCCCTCCCTCATTCTTTCCGCTTTGGCTTCTCCT
CGCAACATTCCTTTTCCTTCCCCCCCGTACATTTTGATTTCACTCACTTT
AATGCCTCCCCTTTCTCCCTCCCTCAGGCACCGGCCCTTCCCGCCAGTTG
CCGCACGTACTCCACGGCAGGAGAAAGAGTGCTGTGATCTGTATCTCACA
CTGTCATAAATCCATTCCTTATTCCCTCTCCCCCCCTCTCTCAGGCATGG
TTCCAGCACTGACAGGG
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protein sequence of jgi.p|Nanoce1779_2|588129

>mRNA_4858-protein ID=mRNA_4858-protein|Name=jgi.p|Nanoce1779_2|588129|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MKQGAMRAAPAGDQPVPSAAVVRRRLTRFARLPERIALCIDVSPEMGQPW
SASSPLPTRLDVLKQALTVFLHIKSLLNPRHEFSLVTVDEQESRVVLPFS
VALPEIYRTLSNITPVGTWPPAAPAADAVTDPIGATPTANGINLSHLLGN
TLPSLLSKYLTHNRDSSYDNPGTPSSSSSQPALARAILFMGTSYALPLLP
QPSVVQALFANDSFFFDMMYLHARKASPPVPLTPPPPSSSTTTEVVLVDL
ADDQDDVAVVQAPAAAQALPPSILPPRIRRSAEIWNACLDLLVDHHPFLP
ESSYCFSVL*
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mRNA from alignment at scaffold_9:789873..791089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4858 ID=mRNA_4858|Name=jgi.p|Nanoce1779_2|588129|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp|location=Sequence derived from alignment at scaffold_9:789873..791089- (Nannochloropsis oceanica)
ACAGTTCCCACCAACCATGAAGCAGGGTGCAATGCGTGCGGCTCCTGCAG
GAGACCAGCCAGTCCCTTCGGCCGCTGTGGTCCGGCGGCGCCTGACCCGT
TTCGCCCGTCTGCCCGAGCGCATTGCGTTGTGCATCGATGTGAGCCCGGA
AATGGGACAGCCCTGGTCCGCCTCGTCGCCTTTGCCCACACGCCTCGATG
TCCTTAAGCAAGCCCTCACCGTTTTCTTGCACATCAAATCGCTTTTAAAC
CCCCGACATGAGTTTTCCCTTGTCACCGTGGACGAGCAAGAGAGCCGCGT
CGTCCTCCCTTTTTCCGTTGCTTTACCTGAAATCTACCGGACGCTCAGTA
ATATAACCCCCGTCGGCACGTGGCCTCCTGCTGCTCCTGCTGCTGATGCT
GTTACTGATCCTATTGGTGCTACGCCTACTGCTAATGGAATCAATTTATC
ACATCTCCTCGGCAACACCCTCCCATCCTTGCTTTCAAAATACTTGACAC
ACAACAGAGACAGCAGCTACGACAACCCTGGAACCCCCTCCTCCTCTTCC
TCGCAACCGGCCCTCGCCCGTGCGATTCTCTTCATGGGCACCTCCTACGC
CTTGCCCCTCCTTCCCCAACCCAGTGTCGTCCAAGCACTCTTTGCCAACG
ATAGCTTCTTCTTCGACATGATGTACCTACATGCACGTAAGGCTTCTCCT
CCTGTCCCTCTCACTCCTCCTCCCCCTTCTTCCTCCACGACCACCGAGGT
GGTGCTAGTGGATTTGGCCGACGACCAAGACGACGTAGCCGTCGTCCAAG
CACCTGCAGCAGCTCAAGCCCTTCCTCCCTCCATTCTTCCTCCGCGTATT
CGCCGCAGCGCCGAGATCTGGAACGCCTGTCTCGATCTGCTCGTTGACCA
TCACCCTTTCTTGCCCGAGTCCAGCTACTGCTTCTCCGTCTTGTGAGTTA
CCCGTCCCCCCCTCCCTCCCTCCCTCATTCTTTCCGCTTTGGCTTCTCCT
CGCAACATTCCTTTTCCTTCCCCCCCGTACATTTTGATTTCACTCACTTT
AATGCCTCCCCTTTCTCCCTCCCTCAGGCACCGGCCCTTCCCGCCAGTTG
CCGCACGTACTCCACGGCAGGAGAAAGAGTGCTGTGATCTGTATCTCACA
CTGTCATAAATCCATTCCTTATTCCCTCTCCCCCCCTCTCTCAGGCATGG
TTCCAGCACTGACAGGG
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Coding sequence (CDS) from alignment at scaffold_9:789873..791089-

>mRNA_4858 ID=mRNA_4858|Name=jgi.p|Nanoce1779_2|588129|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_9:789873..791089- (Nannochloropsis oceanica)
ATGAAGCAGGGTGCAATGCGTGCGGCTCCTGCAGGAGACCAGCCAGTCCC
TTCGGCCGCTGTGGTCCGGCGGCGCCTGACCCGTTTCGCCCGTCTGCCCG
AGCGCATTGCGTTGTGCATCGATGTGAGCCCGGAAATGGGACAGCCCTGG
TCCGCCTCGTCGCCTTTGCCCACACGCCTCGATGTCCTTAAGCAAGCCCT
CACCGTTTTCTTGCACATCAAATCGCTTTTAAACCCCCGACATGAGTTTT
CCCTTGTCACCGTGGACGAGCAAGAGAGCCGCGTCGTCCTCCCTTTTTCC
GTTGCTTTACCTGAAATCTACCGGACGCTCAGTAATATAACCCCCGTCGG
CACGTGGCCTCCTGCTGCTCCTGCTGCTGATGCTGTTACTGATCCTATTG
GTGCTACGCCTACTGCTAATGGAATCAATTTATCACATCTCCTCGGCAAC
ACCCTCCCATCCTTGCTTTCAAAATACTTGACACACAACAGAGACAGCAG
CTACGACAACCCTGGAACCCCCTCCTCCTCTTCCTCGCAACCGGCCCTCG
CCCGTGCGATTCTCTTCATGGGCACCTCCTACGCCTTGCCCCTCCTTCCC
CAACCCAGTGTCGTCCAAGCACTCTTTGCCAACGATAGCTTCTTCTTCGA
CATGATGTACCTACATGCACGTAAGGCTTCTCCTCCTGTCCCTCTCACTC
CTCCTCCCCCTTCTTCCTCCACGACCACCGAGGTGGTGCTAGTGGATTTG
GCCGACGACCAAGACGACGTAGCCGTCGTCCAAGCACCTGCAGCAGCTCA
AGCCCTTCCTCCCTCCATTCTTCCTCCGCGTATTCGCCGCAGCGCCGAGA
TCTGGAACGCCTGTCTCGATCTGCTCGTTGACCATCACCCTTTCTTGCCC
GAGTCCAGCTACTGCTTCTCCGTCTTGTGA
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Synonyms
Publications