jgi.p|Nanoce1779_2|588120, mRNA_4855 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588120
Unique NamemRNA_4855
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_9:785557..786271 +

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Properties
Property NameValue
TranscriptId588206
TrackFilteredModels2
ProteinId588120
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:785557..786271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588120gene_4855Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588120mRNA_4855-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4855CDS_4855Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4855 ID=mRNA_4855|Name=jgi.p|Nanoce1779_2|588120|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
CTCGGGGTTGTTGAAACGGTTTCCACCCTTGTTGTTCGCGGTGGAGAGGG
TGGAGGGAGCGATGGCGAAGCTAAGGGCGGTAGCCGTTGCAGCATCAGCT
CTCTTGGGGCCTGATTGGGTGTTGCCCACGAAAGGGAGGATCGGAGGGAT
GAAGGGGGGGGAGAAGGGCTGGAGGGAGGTCGAGGTGGAGAAGAGGCGCT
TGAGAGGGTTGGTGGGCGCGTTGATGAGGAGGCAGGAGGAGGAGAAGAGG
GAGGAGGAGAGGGAAGCAGCTGCAGCGGTGGCAAGGCAACGGACGCGCTT
GACGTCGTTTTTGGAGAAGGATAATGAGGAGGAGGACGAAGAGGACGAAG
AAGTATTGTACCGGACAATCGGAGGAGGGAGGGGAGGGGGGAGAAGGAGG
AAGAGGAGGCTGCGAAGTCGAAATGCGATCGTGGATAAGTGGCTGGTGGA
TGAGGAGGGGGATGACGCGTATGCGGACTTGGAGGATTTTATCATGCCTG
ATGAGTACACGTGAGGACGTTCGTTGTCGTGGTGGGTGGTTATGTCGGGA
TGGTGGTATAAGAGTGGAAATAGCGATGAATATGATAATGAGATGTAATA
ATTTGATTCAAAGCGATATTTCAAAAGTACCTGACACACAACCAGTAAGC
CATACGGAAAAGAAAAGATATGAAG
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protein sequence of jgi.p|Nanoce1779_2|588120

>mRNA_4855-protein ID=mRNA_4855-protein|Name=jgi.p|Nanoce1779_2|588120|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MAKLRAVAVAASALLGPDWVLPTKGRIGGMKGGEKGWREVEVEKRRLRGL
VGALMRRQEEEKREEEREAAAAVARQRTRLTSFLEKDNEEEDEEDEEVLY
RTIGGGRGGGRRRKRRLRSRNAIVDKWLVDEEGDDAYADLEDFIMPDEYT
*
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mRNA from alignment at scaffold_9:785557..786271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4855 ID=mRNA_4855|Name=jgi.p|Nanoce1779_2|588120|organism=Nannochloropsis oceanica|type=mRNA|length=715bp|location=Sequence derived from alignment at scaffold_9:785557..786271+ (Nannochloropsis oceanica)
CTCGGGGTTGTTGAAACGGTTTCCACCCTTGTTGTTCGCGGTGGAGAGGG
TGGAGGGAGCGATGGCGAAGCTAAGGGCGGTAGCCGTTGCAGCATCAGCT
CTCTTGGGGCCTGATTGGGTGTTGCCCACGAAAGGGAGGATCGGAGGGAT
GAAGGGGGGGGAGAAGGGCTGGAGGGAGGTCGAGGTGGAGAAGAGGCGCT
TGAGAGGGTTGGTGGGCGCGTTGATGAGGAGGCAGGAGGAGGAGAAGAGG
GAGGAGGAGAGGGAAGCAGCTGCAGCGGTGGCAAGGCAACGGACGCGCTT
GACGTCGTTTTTGGAGAAGGATAATGAGGAGGAGGACGAAGAGGACGAAG
AAGTATTGTACCGGACAATCGGAGGAGGGAGGGGAGGGGGGAGAAGGAGG
AAGAGGAGGCTGCGAAGTCGAAATGCGATCGTGGATAAGTGGCTGGTGGA
TGAGGAGGGGGATGACGCGTATGCGGACTTGGAGGATTTTATCATGCCTG
ATGAGTACACGTGAGGACGTTCGTTGTCGTGGTGGGTGGTTATGTCGGGA
TGGTGGTATAAGAGTGGAAATAGCGATGAATGTGAAGGGGGAAGGGGGGG
AGGAGGCGGTTGAGGATGAAGATGATAATGAGATGTAATAATTTGATTCA
AAGCGATATTTCAAAAGTACCTGACACACAACCAGTAAGCCATACGGAAA
AGAAAAGATATGAAG
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Coding sequence (CDS) from alignment at scaffold_9:785557..786271+

>mRNA_4855 ID=mRNA_4855|Name=jgi.p|Nanoce1779_2|588120|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_9:785557..786271+ (Nannochloropsis oceanica)
ATGGCGAAGCTAAGGGCGGTAGCCGTTGCAGCATCAGCTCTCTTGGGGCC
TGATTGGGTGTTGCCCACGAAAGGGAGGATCGGAGGGATGAAGGGGGGGG
AGAAGGGCTGGAGGGAGGTCGAGGTGGAGAAGAGGCGCTTGAGAGGGTTG
GTGGGCGCGTTGATGAGGAGGCAGGAGGAGGAGAAGAGGGAGGAGGAGAG
GGAAGCAGCTGCAGCGGTGGCAAGGCAACGGACGCGCTTGACGTCGTTTT
TGGAGAAGGATAATGAGGAGGAGGACGAAGAGGACGAAGAAGTATTGTAC
CGGACAATCGGAGGAGGGAGGGGAGGGGGGAGAAGGAGGAAGAGGAGGCT
GCGAAGTCGAAATGCGATCGTGGATAAGTGGCTGGTGGATGAGGAGGGGG
ATGACGCGTATGCGGACTTGGAGGATTTTATCATGCCTGATGAGTACACG
TGA
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Synonyms
Publications