jgi.p|Nanoce1779_2|588119, mRNA_4854 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588119
Unique NamemRNA_4854
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1564
Alignment locationscaffold_9:783047..785341 -

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Properties
Property NameValue
TranscriptId588205
TrackFilteredModels2
ProteinId588119
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:783047..785341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588119gene_4854Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588119mRNA_4854-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4854CDS_4854Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4854 ID=mRNA_4854|Name=jgi.p|Nanoce1779_2|588119|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp
TTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCCTCTCTTCCGAACACGAAGACGCAGA
CGATGACGCATCGTCACTTTCCTCGCACTCGTCCTCGTCCTCGTCCTCCA
CTCCTCCTTCCGGGAACAACTCTTCATCCCCCTCCTCCTCCAGCATCTCC
CTTGCCTCCGCCGCCGTAATCACCTCCCCTTCTCCTGCCCTCCTTCCTTC
TCTTCCTCTCCCTCCACCTCCTGACTCTCGGATCCAGGCATAAAAATAAC
GAAGGGCCGCGCCCATGAGGGTGTCAGTGAGAAAGAGGAGATGAGGGAGG
GGGCAGGCCTGGAGGCCAAGACGCAAGAGCCGTTTCAGGACCAGGGATTG
AGGAAGGAAGGGGGTCTCGCGGAGGATGATGAGGGGAAGCTGGGCGAGAG
TGAGGCGGTATGTGTACAAGGAGGAGGACGGAGGGAGGAAGGGAGGAAGG
GGGGGAAGGTAGGTGAGAAGGAGGGAAGAGAGCTCGAGATAGGAGTGAAC
TAGGCGAAGCGGGAGGCCGTGTTTGAGGCCGAGGCGGAGGTCTCGAAGGA
GGGCGAGGAGAAGGGAAGGAAGCCCATGGTAGGCGAGTGCAAAGGAAGGG
GCAGGTGGCTGGGGTGTCTTTTGTAGGGAGGGGATGCTGAGTTTCAGAGA
GGAGGAGGAGGAGGAGTAGGAGGAGGAGTAGGAGTTTGTTGTTGTTGTTA
TTGTTGCTGCTGCTGCTATTCCAGTCGACTTAATGGGACTGTTGTTGCTG
CTGCTGCTGTCAGAAAGGATAAGCTCGCCACCGCTGCTGGCATCACTCCC
GATGCTTTTCCCCTCCTCGTCCTCCCCCTCTTCCTGCTCCTCATCCATCT
CCTCCTCCTCGCTCTCCCCCTCCACCGACCCTACCAATTTAATCTCCTCC
ATTCCCCTCTTCCTGCCTTCCTCCTTCCCTCCTTCGACCTCCTCCTCACC
CGCAAACGCTTCCACCGGACACATTTTCACTACCACCCTCATCAGGTCCA
GTATGGCTACCCTCGCCTCCATCAACCCTTCTTCCCACCCTCGCTCCCTC
GCTCCCTCTTCCAGCCTCTCCAATGCCAAAGACCTGAATTTGGGGTCCAC
GGAGGCGAGGAAGGAGGAGGAGAGGGAGAGGGAGTGAGTGACGGAGGCGA
GGGCTCTTCGACGGGCAAGAGCAGGGTCAATACGACGTTGCTTCCCTTTA
TCGTCGTCGTTCATGCTGCTGCTGCTGCTGCTGCTTCGACGGAGGGCGGC
AATGGCGTGGAGGTCGAGGGGATGGAGGATGGATGAGGAGGAAGACGAGG
AGGGAGGTAGGAAGAGAGGGAGGGCGGATGCTTTCTCCCTTTCCTTGGCC
GTGGTGTCCAAAAGGTGTTTTCGGGCCTCGGCTGTTCTGTCGATGGCTCG
GCAATTCTCACATGAAGACGACGACGACGACGAGGAGGAGGAGGAGGAGG
AGGGAAGCGACTTCCTCGCACCCTTCCACGCCTCCGCCTCTTTTCCCCCC
TTCCTGCCCTCCCC
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protein sequence of jgi.p|Nanoce1779_2|588119

>mRNA_4854-protein ID=mRNA_4854-protein|Name=jgi.p|Nanoce1779_2|588119|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MGLLLLLLLSERISSPPLLASLPMLFPSSSSPSSCSSSISSSSLSPSTDP
TNLISSIPLFLPSSFPPSTSSSPANASTGHIFTTTLIRSSMATLASINPS
SHPRSLAPSSSLSNAKDLNLGSTEARKEEERERE*
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mRNA from alignment at scaffold_9:783047..785341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4854 ID=mRNA_4854|Name=jgi.p|Nanoce1779_2|588119|organism=Nannochloropsis oceanica|type=mRNA|length=2295bp|location=Sequence derived from alignment at scaffold_9:783047..785341- (Nannochloropsis oceanica)
TTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCTCTCCTTCTCAC
GTACCACGCACTTTCTCTCCTTCCCCTCCCTCTTCCTCTTTCCCCCTTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCTCTTCCTCCTCCTCTATCTTCTT
CGTTAGGCCTCTCATCCTTCCCAGCACCTTACCCGTCGCCAATCGCACGG
CCCCAAACAATTTCAACAGAAAAGAGAGGAGGCGGAGCTTGAGTGAGGGA
GGGAGGAAGCAGGCCGCGACACGGTAGGTGACACCCTTTCCGTTCGATTG
GAAGGCGGCGCCTGAACCGACGTCGATGGGTTTGCAGAAGGCCAGGAGGT
GGGAGAACAGGAGGGGATAGGAAGGAAGGGAGGACGGGTGGAGGGAGGAC
GGGTGGAGGGAGGAAAACGAGGGGGAAGGGGGGGAAGGGAGGGAGGGGGG
GAGAAGAAGGCTTTCGAAGTGGTTGAGGAGGGAGAGGACGGCGACTTGCC
AGCAGGAGACAGAGGCGAAGCGGATGGAGGAGAGATCAACAAGAGGAGGA
GGAGGAGGAGTAAGAGGGGGGTGTATTTCCACCTCAAGCTCTCCCTCCTT
TCTTTGAGTATCTGCTGCTGCTGCCACTGCTACTGCTGCTACTAGAGGTG
GTGAATTTTCCTTCGTTCGCTTCGCCGTTACATTCCTCTTTCCCTTCCCC
TTCTTCTCCTTCGTCGTCTTCTTTCCCCCCCTGTCTTTTTGCCTTCGCCG
TCTCCTTTTTCTCTTCCTCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCCTCTCTTCCGAACACGAAGACGCAGACGATGACGCATCGTCACTT
TCCTCGCACTCGTCCTCGTCCTCGTCCTCCACTCCTCCTTCCGGGAACAA
CTCTTCATCCCCCTCCTCCTCCAGCATCTCCCTTGCCTCCGCCGCCGTAA
TCACCTCCCCTTCTCCTGCCCTCCTTCCTTCTCTTCCTCTCCCTCCACCT
CCTGACTCTCGGATCCAGGCATAAAAATAACGAAGGGCCGCGCCCATGAG
GGTGTCAGTGAGAAAGAGGAGATGAGGGAGGGGGCAGGCCTGGAGGCCAA
GACGCAAGAGCCGTTTCAGGACCAGGGATTGAGGAAGGAAGGGGGTCTCG
CGGAGGATGATGAGGGGAAGCTGGGCGAGAGTGAGGCGGTATGTGTACAA
GGAGGAGGACGGAGGGAGGAAGGGAGGAAGGGGGGGAAGGTAGGTGAGAA
GGAGGGAAGAGAGCTCGAGATAGGAGTGAACTAGGCGAAGCGGGAGGCCG
TGTTTGAGGCCGAGGCGGAGGTCTCGAAGGAGGGCGAGGAGAAGGGAAGG
AAGCCCATGGTAGGCGAGTGCAAAGGAAGGGGCAGGTGGCTGGGGTGTCT
TTTGTAGGGAGGGGATGCTGAGTTTCAGAGAGGAGGAGGAGGAGGAGTAG
GAGGAGGAGTAGGAGTTTGTTGTTGTTGTTATTGTTGCTGCTGCTGCTAT
TCCAGTCGACTTAATGGGACTGTTGTTGCTGCTGCTGCTGTCAGAAAGGA
TAAGCTCGCCACCGCTGCTGGCATCACTCCCGATGCTTTTCCCCTCCTCG
TCCTCCCCCTCTTCCTGCTCCTCATCCATCTCCTCCTCCTCGCTCTCCCC
CTCCACCGACCCTACCAATTTAATCTCCTCCATTCCCCTCTTCCTGCCTT
CCTCCTTCCCTCCTTCGACCTCCTCCTCACCCGCAAACGCTTCCACCGGA
CACATTTTCACTACCACCCTCATCAGGTCCAGTATGGCTACCCTCGCCTC
CATCAACCCTTCTTCCCACCCTCGCTCCCTCGCTCCCTCTTCCAGCCTCT
CCAATGCCAAAGACCTGAATTTGGGGTCCACGGAGGCGAGGAAGGAGGAG
GAGAGGGAGAGGGAGTGAGTGACGGAGGCGAGGGCTCTTCGACGGGCAAG
AGCAGGGTCAATACGACGTTGCTTCCCTTTATCGTCGTCGTTCATGCTGC
TGCTGCTGCTGCTGCTTCGACGGAGGGCGGCAATGGCGTGGAGGTCGAGG
GGATGGAGGATGGATGAGGAGGAAGACGAGGAGGGAGGTAGGAAGAGAGG
GAGGGCGGATGCTTTCTCCCTTTCCTTGGCCGTGGTGTCCAAAAGGTGTT
TTCGGGCCTCGGCTGTTCTGTCGATGGCTCGGCAATTCTCACATGAAGAC
GACGACGACGACGAGGAGGAGGAGGAGGAGGAGGGAAGCGACTTCCTCGC
ACCCTTCCACGCCTCCGCCTCTTTTCCCCCCTTCCTGCCCTCCCC
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Coding sequence (CDS) from alignment at scaffold_9:783047..785341-

>mRNA_4854 ID=mRNA_4854|Name=jgi.p|Nanoce1779_2|588119|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_9:783047..785341- (Nannochloropsis oceanica)
ATGGGACTGTTGTTGCTGCTGCTGCTGTCAGAAAGGATAAGCTCGCCACC
GCTGCTGGCATCACTCCCGATGCTTTTCCCCTCCTCGTCCTCCCCCTCTT
CCTGCTCCTCATCCATCTCCTCCTCCTCGCTCTCCCCCTCCACCGACCCT
ACCAATTTAATCTCCTCCATTCCCCTCTTCCTGCCTTCCTCCTTCCCTCC
TTCGACCTCCTCCTCACCCGCAAACGCTTCCACCGGACACATTTTCACTA
CCACCCTCATCAGGTCCAGTATGGCTACCCTCGCCTCCATCAACCCTTCT
TCCCACCCTCGCTCCCTCGCTCCCTCTTCCAGCCTCTCCAATGCCAAAGA
CCTGAATTTGGGGTCCACGGAGGCGAGGAAGGAGGAGGAGAGGGAGAGGG
AGTGA
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Synonyms
Publications