jgi.p|Nanoce1779_2|588118, mRNA_4853 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588118
Unique NamemRNA_4853
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length375
Alignment locationscaffold_9:782134..782508 -

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Properties
Property NameValue
TranscriptId588204
TrackFilteredModels2
ProteinId588118
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:782134..782508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588118gene_4853Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588118mRNA_4853-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4853CDS_4853Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4853 ID=mRNA_4853|Name=jgi.p|Nanoce1779_2|588118|organism=Nannochloropsis oceanica|type=mRNA|length=375bp
CTAAGCATCCCATGGACCTTATACAGCTCCATACACGCGTGATACGCCGC
CGTGTGCAACGCCCTCTCTTCCTCTTCCTCCTCCTCCCGCCCACCCGGGA
GGGAAGGAGGGAGGGCGGCAAGCCGGGCCCCCATCGTCAGCACGCCCTCT
ATCAAGACTTCAACGAGGGGAATGAAGAGATGGATCTTGTCGGCTGTGCT
GACGGCATCAGGGTCGCATGTGGGGAGGAGGTTGCAGCCACCACTGTCTT
TGTTTTGGCCTAGCCCCCCCCACCTTCCATCCCTCCCTTCTGGTAATATC
TGCTCTCTGTGGAGCCTAGCCGATCTGTGCCCGTACCAATTGGCTCCCTT
CCCCCCTTCTTCCTTCCCGCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|588118

>mRNA_4853-protein ID=mRNA_4853-protein|Name=jgi.p|Nanoce1779_2|588118|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MDLIQLHTRVIRRRVQRPLFLFLLLPPTREGRREGGKPGPHRQHALYQDF
NEGNEEMDLVGCADGIRVACGEEVAATTVFVLA*
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mRNA from alignment at scaffold_9:782134..782508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4853 ID=mRNA_4853|Name=jgi.p|Nanoce1779_2|588118|organism=Nannochloropsis oceanica|type=mRNA|length=375bp|location=Sequence derived from alignment at scaffold_9:782134..782508- (Nannochloropsis oceanica)
CTAAGCATCCCATGGACCTTATACAGCTCCATACACGCGTGATACGCCGC
CGTGTGCAACGCCCTCTCTTCCTCTTCCTCCTCCTCCCGCCCACCCGGGA
GGGAAGGAGGGAGGGCGGCAAGCCGGGCCCCCATCGTCAGCACGCCCTCT
ATCAAGACTTCAACGAGGGGAATGAAGAGATGGATCTTGTCGGCTGTGCT
GACGGCATCAGGGTCGCATGTGGGGAGGAGGTTGCAGCCACCACTGTCTT
TGTTTTGGCCTAGCCCCCCCCACCTTCCATCCCTCCCTTCTGGTAATATC
TGCTCTCTGTGGAGCCTAGCCGATCTGTGCCCGTACCAATTGGCTCCCTT
CCCCCCTTCTTCCTTCCCGCCCTCC
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Coding sequence (CDS) from alignment at scaffold_9:782134..782508-

>mRNA_4853 ID=mRNA_4853|Name=jgi.p|Nanoce1779_2|588118|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_9:782134..782508- (Nannochloropsis oceanica)
ATGGACCTTATACAGCTCCATACACGCGTGATACGCCGCCGTGTGCAACG
CCCTCTCTTCCTCTTCCTCCTCCTCCCGCCCACCCGGGAGGGAAGGAGGG
AGGGCGGCAAGCCGGGCCCCCATCGTCAGCACGCCCTCTATCAAGACTTC
AACGAGGGGAATGAAGAGATGGATCTTGTCGGCTGTGCTGACGGCATCAG
GGTCGCATGTGGGGAGGAGGTTGCAGCCACCACTGTCTTTGTTTTGGCCT
AG
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Synonyms
Publications