jgi.p|Nanoce1779_2|588104, mRNA_4850 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588104
Unique Name	mRNA_4850
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1123
Alignment location	scaffold_9:772872..774537 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588190
Track	FilteredModels2
ProteinId	588104

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:772872..774537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588104	gene_4850	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588104	mRNA_4850-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4850	CDS_4850	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:772872..774537+
coding sequence from alignment at scaffold_9:772872..774537+

mRNA sequence

>mRNA_4850 ID=mRNA_4850|Name=jgi.p|Nanoce1779_2|588104|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp
AGTATTCACTGTTACTCTTCCCCGTAAGCCAAGCTTATTAGCCGAGCCAT
GGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGCAC
TGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGCAC
CCGAAGGAGTTCGAGGCCAAGGTCGACAAGTACCTCCGCTCCAACTCTCC
CCCCTTGCGGGAGGGGTACTCCTCCTTCTGCTATCACCTTATTGTTCCAA
ATTTTGCACACCTGAAAGTGTCCTACCTTAAAATTAAGGTGGAAAATGAG
CACTTGATTCGATCGACCTATGATGCCAATAGCCCGAGAGATCTCCCTGT
CCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGAAATGATGGGCCCCG
CAAAGTTTTTGGACATTATCCTCTACAGCCGCAATGAGATCCATAAGGAG
AATGTGGCCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCGTG
GGGGATCATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGATGC
TCCCCACGACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCTCG
GGCGTTCCTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGGAT
GGACCATGCCGCCATCCGTTGAGAGGGGAGGGAGGGGAAGTATGAGGAAT
GTAAAGAAGGAAGAGACGGAGCTTTCGAGCTGTTGAAGGAACCCTAAAGG
GCGTTGGGCGTCATTCTTCCTTTGCTCTTCTTCCCCTTCTTGTTATTCTT
CTTCTTTTACTTCCTCTGCCTCTTCCACTGCTTCATTCCCTTTTCCCTGC
TTGTCGTCCTTCTTTTTCTTCGACTTGATTCGATTTCTCACCCTTTAGTT
CCGCTGACGTATCGTTATGGTTGTCGTGGTGTGTGGGGCGAAGCAACACA
AAGACCTTCTACTAATTACTTTTGTGAATTCCGTCTCCTTCCTCCCTCCC
TACCTCTTTCCCTCCGTCCCTCCTCTCTCTCTAAGGCGCTCTCGCCGCCG
TTTTCTCTGCGCCTGGTGGGGACTTGGGCCTCGGAGATCTTGGAGCCCCT
CTTTCCCCCCCTCCTTCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|588104

>mRNA_4850-protein ID=mRNA_4850-protein|Name=jgi.p|Nanoce1779_2|588104|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MAAVDSSEKLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNS
PPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLP
VLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAP
WGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFW
MDHAAIR*

mRNA from alignment at scaffold_9:772872..774537+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4850 ID=mRNA_4850|Name=jgi.p|Nanoce1779_2|588104|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp|location=Sequence derived from alignment at scaffold_9:772872..774537+ (Nannochloropsis oceanica)
AGTATTCACTGTTACTCTTCCCCGTAAGCCAAGCTTATTAGCCGAGCCAT
GGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGCAC
TGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGCAC
CCGAAGGAGTTCGAGGCCAAGGTACGTCTGGCGTGGTGGTGGGCGAGCGA
GGGCATGTTTTTGTGGCATACTTTTGTCGTGTCATGTCCCGATGACGTAC
ACTTCTTCCTCTCTTCACTCCCCTCCTCCCCTTCGTATTTCTCCCAAGAC
ACGCAATGCAGAGACTGTGTGGTGTCGTTGATGCGTACATGTGCATTTAA
TGAATTTCTCTGTCCTTTCATCCTCTTTCGTTGTCCTCTCCCTTTTTCCC
TCCCTCCCTCCCTCCCAACCTCTCCTACCCTGCGACAGGTCGACAAGTAC
CTCCGCTCCAACTCTCCCCCCTTGCGGGAGGGGTACTCCTCCTTCTGCTA
TCACCTTATTGTTCCAAATTTTGCACACCTGAAAGTGTCCTACCTTAAAA
TTAAGGTGGAAAATGAGCACTTGATTCGATCGACCTATGATGCCAATAGC
CCGAGGTAAGGAGGGAGGGAGGGACTGAGGGAGAATTATAACAGGCGTGA
ATTAGATTTGAGAACAATATGTGCTTGTGAAGTAGATATTACCGTGATAC
GCGTCTCATTTATGCCTCTACTTCTTTCATTCCCTCCTTCGTGTCTGTAG
AGATCTCCCTGTCCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGAAA
TGATGGGCCCCGCAAAGTTTTTGGACATTATCCTCTACAGCCGCAATGAG
ATCCATAAGGAGAATGTGGTGAGTCGCCTTCTTTTCTACCTGGCCTTCTT
CCCTCCTTCCCTCCATCCCGCCGTGCACTCGTGGTGGTGCATCCTTTTCC
TGCTCTTATGTCCCTCGTTAAACGCTTACTTTGCCAATTCCTCCTCCAGG
CCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCGTGGGGGATC
ATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGATGCTCCCCAC
GACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCTCGGGCGTTC
CTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGGATGGACCAT
GCCGCCATCCGTTGAGAGGGGAGGGAGGGGAAGTATGAGGAATGTAAAGA
AGGAAGAGACGGAGCTTTCGAGCTGTTGAAGGAACCCTAAAGGGCGTTGG
GCGTCATTCTTCCTTTGCTCTTCTTCCCCTTCTTGTTATTCTTCTTCTTT
TACTTCCTCTGCCTCTTCCACTGCTTCATTCCCTTTTCCCTGCTTGTCGT
CCTTCTTTTTCTTCGACTTGATTCGATTTCTCACCCTTTAGTTCCGCTGA
CGTATCGTTATGGTTGTCGTGGTGTGTGGGGCGAAGCAACACAAAGACCT
TCTACTAATTACTTTTGTGAATTCCGTCTCCTTCCTCCCTCCCTACCTCT
TTCCCTCCGTCCCTCCTCTCTCTCTAAGGCGCTCTCGCCGCCGTTTTCTC
TGCGCCTGGTGGGGACTTGGGCCTCGGAGATCTTGGAGCCCCTCTTTCCC
CCCCTCCTTCCCCCCC

Coding sequence (CDS) from alignment at scaffold_9:772872..774537+

>mRNA_4850 ID=mRNA_4850|Name=jgi.p|Nanoce1779_2|588104|organism=Nannochloropsis oceanica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_9:772872..774537+ (Nannochloropsis oceanica)
ATGGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGC
ACTGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGC
ACCCGAAGGAGTTCGAGGCCAAGGTCGACAAGTACCTCCGCTCCAACTCT
CCCCCCTTGCGGGAGGGGTACTCCTCCTTCTGCTATCACCTTATTGTTCC
AAATTTTGCACACCTGAAAGTGTCCTACCTTAAAATTAAGGTGGAAAATG
AGCACTTGATTCGATCGACCTATGATGCCAATAGCCCGAGAGATCTCCCT
GTCCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGAAATGATGGGCCC
CGCAAAGTTTTTGGACATTATCCTCTACAGCCGCAATGAGATCCATAAGG
AGAATGTGGCCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCG
TGGGGGATCATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGAT
GCTCCCCACGACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCT
CGGGCGTTCCTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGG
ATGGACCATGCCGCCATCCGTTGAATGGCCGCCGTCGACTCGAGTGAGAA
GCTAGCTACCTTGGAGCCCGTTGCACTGCGCCAATTCACGGACCCCGGCT
TCGTCGGGCCCAAGATTTACTTGCACCCGAAGGAGTTCGAGGCCAAGGTC
GACAAGTACCTCCGCTCCAACTCTCCCCCCTTGCGGGAGGGGTACTCCTC
CTTCTGCTATCACCTTATTGTTCCAAATTTTGCACACCTGAAAGTGTCCT
ACCTTAAAATTAAGGTGGAAAATGAGCACTTGATTCGATCGACCTATGAT
GCCAATAGCCCGAGAGATCTCCCTGTCCTGACGCGTTACTTCCCTGCCGA
CGAAGTCAGGGAAATGATGGGCCCCGCAAAGTTTTTGGACATTATCCTCT
ACAGCCGCAATGAGATCCATAAGGAGAATGTGGCCCGCGGCATGGCCCAC
TTGAACAAGGAGACGGACGCACCGTGGGGGATCATGCGTGTAAAGGCTCA
AGACGTCGACAAGGAGCTGCCGATGCTCCCCACGACGTTGATACGAAATG
CCCTGGGGAATGAATTTGGAGGCTCGGGCGTTCCTTTGGACGTGAAGAGG
TATAAAGAGAGCGTTGCCTTCTGGATGGACCATGCCGCCATCCGTTGAAT
GGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGCAC
TGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGCAC
CCGAAGGAGTTCGAGGCCAAGGTCGACAAGTACCTCCGCTCCAACTCTCC
CCCCTTGCGGGAGGGGTACTCCTCCTTCTGCTATCACCTTATTGTTCCAA
ATTTTGCACACCTGAAAGTGTCCTACCTTAAAATTAAGGTGGAAAATGAG
CACTTGATTCGATCGACCTATGATGCCAATAGCCCGAGAGATCTCCCTGT
CCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGAAATGATGGGCCCCG
CAAAGTTTTTGGACATTATCCTCTACAGCCGCAATGAGATCCATAAGGAG
AATGTGGCCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCGTG
GGGGATCATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGATGC
TCCCCACGACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCTCG
GGCGTTCCTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGGAT
GGACCATGCCGCCATCCGTTGAATGGCCGCCGTCGACTCGAGTGAGAAGC
TAGCTACCTTGGAGCCCGTTGCACTGCGCCAATTCACGGACCCCGGCTTC
GTCGGGCCCAAGATTTACTTGCACCCGAAGGAGTTCGAGGCCAAGGTCGA
CAAGTACCTCCGCTCCAACTCTCCCCCCTTGCGGGAGGGGTACTCCTCCT
TCTGCTATCACCTTATTGTTCCAAATTTTGCACACCTGAAAGTGTCCTAC
CTTAAAATTAAGGTGGAAAATGAGCACTTGATTCGATCGACCTATGATGC
CAATAGCCCGAGAGATCTCCCTGTCCTGACGCGTTACTTCCCTGCCGACG
AAGTCAGGGAAATGATGGGCCCCGCAAAGTTTTTGGACATTATCCTCTAC
AGCCGCAATGAGATCCATAAGGAGAATGTGGCCCGCGGCATGGCCCACTT
GAACAAGGAGACGGACGCACCGTGGGGGATCATGCGTGTAAAGGCTCAAG
ACGTCGACAAGGAGCTGCCGATGCTCCCCACGACGTTGATACGAAATGCC
CTGGGGAATGAATTTGGAGGCTCGGGCGTTCCTTTGGACGTGAAGAGGTA
TAAAGAGAGCGTTGCCTTCTGGATGGACCATGCCGCCATCCGTTGA

Synonyms

Publications