jgi.p|Nanoce1779_2|577442, mRNA_485 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577442
Unique NamemRNA_485
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1272
Alignment locationscaffold_3:1175117..1176388 -

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Properties
Property NameValue
TranscriptId577528
TrackFilteredModels2
ProteinId577442
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1175117..1176388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577442gene_485Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577442mRNA_485-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_485CDS_485Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_485 ID=mRNA_485|Name=jgi.p|Nanoce1779_2|577442|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
GCCCTTGCGAGCGGCAAAGGCGGATGCGGCCATGCTGCTGTTATTGCTGC
TGTTGCGTGGACTGCTGCAAGGGGGAGTAAGGGATGGGGTGGAGTGAGAG
AAAAAAGATGGTCAGTGCGTGAAAATGCGTGCGATCGACGCAGCGGGAGG
AAGAAACGCTGTTGCAAGCACCAGGTTTCAACCGTGAAGCCGTGATGTGT
GGGCAGTGCGGATCTGTGGTTGCGTGCAGGCGAGAGTCTGCCAGTGGTTG
AAGACAAATGGTCAAGGTGCTTTGTTCTGCGGGCTGGTGCTTCGACACTT
TATCCAAAGCTACAAACTCCATCGAAATTGATACGCCTGACAGTGACTCA
ACGCGCAGGAGCTTATCTGTCTTCCTATCCTTTGGTGGGGTGAATGGTCC
AGAGCAAAGCGGGAATTTGGTGTGGTAAGTGGACGTACTGCATGGCAGGG
ACGCTGCGTTTGGCGATTCTATCAGAAGGCCTTCGAGTGCCCGCGTCCGC
TCACACAACAGATTGCAACAAACTACACCAGCTCAAGCATACACTGCCGG
AGAGAGCGTTTGCGCCTAAGAAAACCACCTGCCTGTACCTAAAGCGCGAC
CTTAGTACGAAAGATGCCTGCCATTATGACCACACAAAAGGCATGAGGCA
TGATATCGATCGTTCAAGCAATAAGCCGTCCGCCCGACCAAATGATTCCC
GACCCTATTTTGTACGATTGGGACTTGCCCCACCCATTCGCAAAGATGAG
GCTTATCTGTATAGATTGTGTAGCATGTCGTCTATCACAGACCTCCAGTG
TTTCTCTCCCATTATCACACAAGCAGCAACTCGGACCTCCCCACCCCAGT
ACTCTCCTCCCCTACCACCCGCAATGCTGCCACTCGTGCGCGGCGGAGGG
GCTTTGCTCCTTGCCGTGGTAATAAGCATTCTCGTCGACCATGTCGCCCA
TGCCTTCCTGCCAATGCCGCGATGCATTATGGTAAGTTGATTTATTAAAG
CATGGTTCCTTTCCTTCTAGAGGAAGAAGGTATCCCCTGTATGTCTTCCG
TCCTCATTATCCACAACGCCTGTGCTCTTCAATTGTGCGTCATTTCTCTC
ACCAATTTTATCAAAGTCTCCATCACAATGCTTTCCTATCCCAATCTCCT
CCTTTCTCGCCTTGCTACGACACAGAAACACGCCTCCCGCCTTCCAAAAC
TGCGCGCCCGCCGCTCCCTCCTGAGCGCCTCCTCCTCTGCCAGTAGCGAC
AGTCCCACGCATTTCGACTACC
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protein sequence of jgi.p|Nanoce1779_2|577442

>mRNA_485-protein ID=mRNA_485-protein|Name=jgi.p|Nanoce1779_2|577442|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MVQSKAGIWCGKWTYCMAGTLRLAILSEGLRVPASAHTTDCNKLHQLKHT
LPERAFAPKKTTCLYLKRDLSTKDACHYDHTKGMRHDIDRSSNKPSARPN
DSRPYFVRLGLAPPIRKDEAYLYRLCSMSSITDLQCFSPIITQAATRTSP
PQYSPPLPPAMLPLVRGGGALLLAVVISILVDHVAHAFLPMPRCIMV
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mRNA from alignment at scaffold_3:1175117..1176388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_485 ID=mRNA_485|Name=jgi.p|Nanoce1779_2|577442|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp|location=Sequence derived from alignment at scaffold_3:1175117..1176388- (Nannochloropsis oceanica)
GCCCTTGCGAGCGGCAAAGGCGGATGCGGCCATGCTGCTGTTATTGCTGC
TGTTGCGTGGACTGCTGCAAGGGGGAGTAAGGGATGGGGTGGAGTGAGAG
AAAAAAGATGGTCAGTGCGTGAAAATGCGTGCGATCGACGCAGCGGGAGG
AAGAAACGCTGTTGCAAGCACCAGGTTTCAACCGTGAAGCCGTGATGTGT
GGGCAGTGCGGATCTGTGGTTGCGTGCAGGCGAGAGTCTGCCAGTGGTTG
AAGACAAATGGTCAAGGTGCTTTGTTCTGCGGGCTGGTGCTTCGACACTT
TATCCAAAGCTACAAACTCCATCGAAATTGATACGCCTGACAGTGACTCA
ACGCGCAGGAGCTTATCTGTCTTCCTATCCTTTGGTGGGGTGAATGGTCC
AGAGCAAAGCGGGAATTTGGTGTGGTAAGTGGACGTACTGCATGGCAGGG
ACGCTGCGTTTGGCGATTCTATCAGAAGGCCTTCGAGTGCCCGCGTCCGC
TCACACAACAGATTGCAACAAACTACACCAGCTCAAGCATACACTGCCGG
AGAGAGCGTTTGCGCCTAAGAAAACCACCTGCCTGTACCTAAAGCGCGAC
CTTAGTACGAAAGATGCCTGCCATTATGACCACACAAAAGGCATGAGGCA
TGATATCGATCGTTCAAGCAATAAGCCGTCCGCCCGACCAAATGATTCCC
GACCCTATTTTGTACGATTGGGACTTGCCCCACCCATTCGCAAAGATGAG
GCTTATCTGTATAGATTGTGTAGCATGTCGTCTATCACAGACCTCCAGTG
TTTCTCTCCCATTATCACACAAGCAGCAACTCGGACCTCCCCACCCCAGT
ACTCTCCTCCCCTACCACCCGCAATGCTGCCACTCGTGCGCGGCGGAGGG
GCTTTGCTCCTTGCCGTGGTAATAAGCATTCTCGTCGACCATGTCGCCCA
TGCCTTCCTGCCAATGCCGCGATGCATTATGGTAAGTTGATTTATTAAAG
CATGGTTCCTTTCCTTCTAGAGGAAGAAGGTATCCCCTGTATGTCTTCCG
TCCTCATTATCCACAACGCCTGTGCTCTTCAATTGTGCGTCATTTCTCTC
ACCAATTTTATCAAAGTCTCCATCACAATGCTTTCCTATCCCAATCTCCT
CCTTTCTCGCCTTGCTACGACACAGAAACACGCCTCCCGCCTTCCAAAAC
TGCGCGCCCGCCGCTCCCTCCTGAGCGCCTCCTCCTCTGCCAGTAGCGAC
AGTCCCACGCATTTCGACTACC
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Coding sequence (CDS) from alignment at scaffold_3:1175117..1176388-

>mRNA_485 ID=mRNA_485|Name=jgi.p|Nanoce1779_2|577442|organism=Nannochloropsis oceanica|type=CDS|length=592bp|location=Sequence derived from alignment at scaffold_3:1175117..1176388- (Nannochloropsis oceanica)
ATGGTCCAGAGCAAAGCGGGAATTTGGTGTGGTAAGTGGACGTACTGCAT
GGCAGGGACGCTGCGTTTGGCGATTCTATCAGAAGGCCTTCGAGTGCCCG
CGTCCGCTCACACAACAGATTGCAACAAACTACACCAGCTCAAGCATACA
CTGCCGGAGAGAGCGTTTGCGCCTAAGAAAACCACCTGCCTGTACCTAAA
GCGCGACCTTAGTACGAAAGATGCCTGCCATTATGACCACACAAAAGGCA
TGAGGCATGATATCGATCGTTCAAGCAATAAGCCGTCCGCCCGACCAAAT
GATTCCCGACCCTATTTTGTACGATTGGGACTTGCCCCACCCATTCGCAA
AGATGAGGCTTATCTGTATAGATTGTGTAGCATGTCGTCTATCACAGACC
TCCAGTGTTTCTCTCCCATTATCACACAAGCAGCAACTCGGACCTCCCCA
CCCCAGTACTCTCCTCCCCTACCACCCGCAATGCTGCCACTCGTGCGCGG
CGGAGGGGCTTTGCTCCTTGCCGTGGTAATAAGCATTCTCGTCGACCATG
TCGCCCATGCCTTCCTGCCAATGCCGCGATGCATTATGGTAA
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Synonyms
Publications