jgi.p|Nanoce1779_2|588100, mRNA_4849 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588100
Unique Name	mRNA_4849
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1076
Alignment location	scaffold_9:771193..772641 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588186
Track	FilteredModels2
ProteinId	588100

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:771193..772641 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588100	gene_4849	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588100	mRNA_4849-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4849	CDS_4849	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:771193..772641+
coding sequence from alignment at scaffold_9:771193..772641+

mRNA sequence

>mRNA_4849 ID=mRNA_4849|Name=jgi.p|Nanoce1779_2|588100|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp
ACAGCCATCGCGTCCAAGCCTAGCCAATGGATCGTCCCGGGAGAGCCAAG
CTTGCTTCCCTGCTGAAGAAGCGCCAACGCACCGCCTCCTCCGCCTCTGC
CTCGTCAAGGAGTAAAAAGGCGGCCGCTCCAGCCAGCAAGCACTCACCCT
CCTCGTCCTTTCCCCCTCCAACAAATGCCCGCGCATCGTCCATCTCTTCA
CTGGACGCCCAGGCTAAAGCGATAGATCTCTTAGTCCAAGCGCTGCTCGT
GGTGGATGGGGAAAAGACTCTTCGGAAGAATGGGGCGAGGAAGGGAGCTG
AGGTAGCTGGGCAAGGAGACAAGAAGGAGGGGAAGGAGGCCACCACCACC
ACGAACACCTCAGCTGGTGCGGCAATGGCAGCAGCCGGGAAGAAGAAGAA
AACGGAGGACATGAAGAAGGGCGTGACAGCTGGCAAAGAGGCGGCTGCTC
CTGCTCGTCCTGATGCCTCGGCTTCGCCCTTTTCAGAAAGCCGGGTGCGG
GAGGCGGCGACAGAGATCGAGGAAGCGTTGCACGACCTGTGGAAGGCGGG
GAACCACCACGAGTACAACAACAAGTTACGCCACCTTGTCTTCAATTTGC
ACCGCAATGACGCCCTCCGGAGGAAAGTGCTCGACGGGTCCCTCCCTCCC
ACCAAGCTCCTTTCCCTCCCCATCGAAGCACTCCGGACTGACGCCGAACG
AGATGCAGCCAAGGCCGTGGAAAAGAAAGAGATATTGGGCTACAGTCACT
CGCATGTCTTTTCTGATGTCATCTTTGAAGAAGCGGCAAAGGGTGTGACG
GGGATGAAGGGAGGAGTTGGAGAAGGGATGGGAGGGAAGTGCCGGCAGTG
TGAGAGTACGAAGGTGCTGTTTTCTCGTCGGCAGTCGTATAATGAGAGTA
GTACGTGGTGTGGAGAGGAGCAGGGCGTGCCAGTCATGATGAATTGTTTG
AGTTGTGGGACCGTGGAGTCGATAAGGGAATGAGTGTGTCTCTGCGGGAG
GAAGAAAAGGGAGAACGGGAGGGTGAAATGAAGGAGCTGAAAAACAAAGA
AGAGAACTATACAGGAGTGCGTGCGA

protein sequence of jgi.p|Nanoce1779_2|588100

>mRNA_4849-protein ID=mRNA_4849-protein|Name=jgi.p|Nanoce1779_2|588100|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MDRPGRAKLASLLKKRQRTASSASASSRSKKAAAPASKHSPSSSFPPPTN
ARASSISSLDAQAKAIDLLVQALLVVDGEKTLRKNGARKGAEVAGQGDKK
EGKEATTTTNTSAGAAMAAAGKKKKTEDMKKGVTAGKEAAAPARPDASAS
PFSESRVREAATEIEEALHDLWKAGNHHEYNNKLRHLVFNLHRNDALRRK
VLDGSLPPTKLLSLPIEALRTDAERDAAKAVEKKEILGYSHSHVFSDVIF
EEAAKGVTGMKGGVGEGMGGKCRQCESTKVLFSRRQSYNESSTWCGEEQG
VPVMMNCLSCGTVESIRE*

mRNA from alignment at scaffold_9:771193..772641+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4849 ID=mRNA_4849|Name=jgi.p|Nanoce1779_2|588100|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp|location=Sequence derived from alignment at scaffold_9:771193..772641+ (Nannochloropsis oceanica)
ACAGCCATCGCGTCCAAGCCTAGCCAATGGATCGTCCCGGGAGAGCCAAG
CTTGCTTCCCTGCTGAAGAAGCGCCAACGCACCGCCTCCTCCGCCTCTGC
CTCGTCAAGGAGTAAAAAGGCGGCCGCTCCAGCCAGCAAGCACTCACCCT
CCTCGTCCTTTCCCCCTCCAACAAATGCCCGCGCATCGTCCATCTCTTCA
CTGGACGCCCAGGCTAAAGCGATAGATCTCTTAGTCCAAGCGCTGCTCGT
GGTGGATGGGGAAAAGACTCTTCGGAAGAATGGGGCGAGGAAGGGAGCTG
AGGTAGCTGGGCAAGGAGACAAGAAGGAGGGGAAGGAGGCCACCACCACC
ACGAACACCTCAGCTGGTGCGGCAATGGCAGCAGCCGGGAAGAAGAAGAA
AACGGAGGACATGAAGAAGGGCGTGACAGCTGGCAAAGAGGCGGCTGCTC
CTGCTCGTCCTGATGCCTCGGCTTCGCCCTTTTCAGAAAGCCGGGTGCGG
GAGGTGAGAGTCAATTGGAGTCACCAAGGGAGAGTGTTGTATGCAGCGAC
GTAGATATTTGCAATTTGTTTGTGATGCCTAAGCAAAAGGTGGTTTGTCT
GCAACTATTCTTCTGACTTATCCACCCACGCGCATACATATGCACAACCA
CCCCCAGGCGGCGACAGAGATCGAGGAAGCGTTGCACGACCTGTGGAAGG
CGGGGAACCACCACGAGTACAACAACAAGTTACGCCACCTTGTCTTCAAT
TGTACGTTTATATATGAACGCAAACGTATGCATTCTCATGGACCTGTCTT
AACTTCAAGTGTGTCATGTCCTCGGCACGCACGCCTTCACTTTTTCTGGT
TCACGGCCCGTCTAATTCCTCCGTACAATATTTCCATTTTTTCTGCTGGT
AAGAAATTTGGTATTCACATTGTCACCTCTTTTTTTCCCGTATGCTACTT
TTCTATCACGCAATAAATAGTGCACCGCAATGACGCCCTCCGGAGGAAAG
TGCTCGACGGGTCCCTCCCTCCCACCAAGCTCCTTTCCCTCCCCATCGAA
GCACTCCGGACTGACGCCGAACGAGATGCAGCCAAGGCCGTGGAAAAGAA
AGAGATATTGGGCTACAGTCACTCGCATGTCTTTTCTGATGTCATCTTTG
AAGAAGCGGCAAAGGGTGTGACGGGGATGAAGGGAGGAGTTGGAGAAGGG
ATGGGAGGGAAGTGCCGGCAGTGTGAGAGTACGAAGGTGCTGTTTTCTCG
TCGGCAGTCGTATAATGAGAGTAGTACGTGGTGTGGAGAGGAGCAGGGCG
TGCCAGTCATGATGAATTGTTTGAGTTGTGGGACCGTGGAGTCGATAAGG
GAATGAGTGTGTCTCTGCGGGAGGAAGAAAAGGGAGAACGGGAGGGTGAA
ATGAAGGAGCTGAAAAACAAAGAAGAGAACTATACAGGAGTGCGTGCGA

Coding sequence (CDS) from alignment at scaffold_9:771193..772641+

>mRNA_4849 ID=mRNA_4849|Name=jgi.p|Nanoce1779_2|588100|organism=Nannochloropsis oceanica|type=CDS|length=2871bp|location=Sequence derived from alignment at scaffold_9:771193..772641+ (Nannochloropsis oceanica)
ATGGATCGTCCCGGGAGAGCCAAGCTTGCTTCCCTGCTGAAGAAGCGCCA
ACGCACCGCCTCCTCCGCCTCTGCCTCGTCAAGGAGTAAAAAGGCGGCCG
CTCCAGCCAGCAAGCACTCACCCTCCTCGTCCTTTCCCCCTCCAACAAAT
GCCCGCGCATCGTCCATCTCTTCACTGGACGCCCAGGCTAAAGCGATAGA
TCTCTTAGTCCAAGCGCTGCTCGTGGTGGATGGGGAAAAGACTCTTCGGA
AGAATGGGGCGAGGAAGGGAGCTGAGGTAGCTGGGCAAGGAGACAAGAAG
GAGGGGAAGGAGGCCACCACCACCACGAACACCTCAGCTGGTGCGGCAAT
GGCAGCAGCCGGGAAGAAGAAGAAAACGGAGGACATGAAGAAGGGCGTGA
CAGCTGGCAAAGAGGCGGCTGCTCCTGCTCGTCCTGATGCCTCGGCTTCG
CCCTTTTCAGAAAGCCGGGTGCGGGAGGCGGCGACAGAGATCGAGGAAGC
GTTGCACGACCTGTGGAAGGCGGGGAACCACCACGAGTACAACAACAAGT
TACGCCACCTTGTCTTCAATTTGCACCGCAATGACGCCCTCCGGAGGAAA
GTGCTCGACGGGTCCCTCCCTCCCACCAAGCTCCTTTCCCTCCCCATCGA
AGCACTCCGGACTGACGCCGAACGAGATGCAGCCAAGGCCGTGGAAAAGA
AAGAGATATTGGGCTACAGTCACTCGCATGTCTTTTCTGATGTCATCTTT
GAAGAAGCGGCAAAGGGTGTGACGGGGATGAAGGGAGGAGTTGGAGAAGG
GATGGGAGGGAAGTGCCGGCAGTGTGAGAGTACGAAGGTGCTGTTTTCTC
GTCGGCAGTCGTATAATGAGAGTAGTACGTGGTGTGGAGAGGAGCAGGGC
GTGCCAGTCATGATGAATTGTTTGAGTTGTGGGACCGTGGAGTCGATAAG
GGAATGAATGGATCGTCCCGGGAGAGCCAAGCTTGCTTCCCTGCTGAAGA
AGCGCCAACGCACCGCCTCCTCCGCCTCTGCCTCGTCAAGGAGTAAAAAG
GCGGCCGCTCCAGCCAGCAAGCACTCACCCTCCTCGTCCTTTCCCCCTCC
AACAAATGCCCGCGCATCGTCCATCTCTTCACTGGACGCCCAGGCTAAAG
CGATAGATCTCTTAGTCCAAGCGCTGCTCGTGGTGGATGGGGAAAAGACT
CTTCGGAAGAATGGGGCGAGGAAGGGAGCTGAGGTAGCTGGGCAAGGAGA
CAAGAAGGAGGGGAAGGAGGCCACCACCACCACGAACACCTCAGCTGGTG
CGGCAATGGCAGCAGCCGGGAAGAAGAAGAAAACGGAGGACATGAAGAAG
GGCGTGACAGCTGGCAAAGAGGCGGCTGCTCCTGCTCGTCCTGATGCCTC
GGCTTCGCCCTTTTCAGAAAGCCGGGTGCGGGAGGCGGCGACAGAGATCG
AGGAAGCGTTGCACGACCTGTGGAAGGCGGGGAACCACCACGAGTACAAC
AACAAGTTACGCCACCTTGTCTTCAATTTGCACCGCAATGACGCCCTCCG
GAGGAAAGTGCTCGACGGGTCCCTCCCTCCCACCAAGCTCCTTTCCCTCC
CCATCGAAGCACTCCGGACTGACGCCGAACGAGATGCAGCCAAGGCCGTG
GAAAAGAAAGAGATATTGGGCTACAGTCACTCGCATGTCTTTTCTGATGT
CATCTTTGAAGAAGCGGCAAAGGGTGTGACGGGGATGAAGGGAGGAGTTG
GAGAAGGGATGGGAGGGAAGTGCCGGCAGTGTGAGAGTACGAAGGTGCTG
TTTTCTCGTCGGCAGTCGTATAATGAGAGTAGTACGTGGTGTGGAGAGGA
GCAGGGCGTGCCAGTCATGATGAATTGTTTGAGTTGTGGGACCGTGGAGT
CGATAAGGGAATGAATGGATCGTCCCGGGAGAGCCAAGCTTGCTTCCCTG
CTGAAGAAGCGCCAACGCACCGCCTCCTCCGCCTCTGCCTCGTCAAGGAG
TAAAAAGGCGGCCGCTCCAGCCAGCAAGCACTCACCCTCCTCGTCCTTTC
CCCCTCCAACAAATGCCCGCGCATCGTCCATCTCTTCACTGGACGCCCAG
GCTAAAGCGATAGATCTCTTAGTCCAAGCGCTGCTCGTGGTGGATGGGGA
AAAGACTCTTCGGAAGAATGGGGCGAGGAAGGGAGCTGAGGTAGCTGGGC
AAGGAGACAAGAAGGAGGGGAAGGAGGCCACCACCACCACGAACACCTCA
GCTGGTGCGGCAATGGCAGCAGCCGGGAAGAAGAAGAAAACGGAGGACAT
GAAGAAGGGCGTGACAGCTGGCAAAGAGGCGGCTGCTCCTGCTCGTCCTG
ATGCCTCGGCTTCGCCCTTTTCAGAAAGCCGGGTGCGGGAGGCGGCGACA
GAGATCGAGGAAGCGTTGCACGACCTGTGGAAGGCGGGGAACCACCACGA
GTACAACAACAAGTTACGCCACCTTGTCTTCAATTTGCACCGCAATGACG
CCCTCCGGAGGAAAGTGCTCGACGGGTCCCTCCCTCCCACCAAGCTCCTT
TCCCTCCCCATCGAAGCACTCCGGACTGACGCCGAACGAGATGCAGCCAA
GGCCGTGGAAAAGAAAGAGATATTGGGCTACAGTCACTCGCATGTCTTTT
CTGATGTCATCTTTGAAGAAGCGGCAAAGGGTGTGACGGGGATGAAGGGA
GGAGTTGGAGAAGGGATGGGAGGGAAGTGCCGGCAGTGTGAGAGTACGAA
GGTGCTGTTTTCTCGTCGGCAGTCGTATAATGAGAGTAGTACGTGGTGTG
GAGAGGAGCAGGGCGTGCCAGTCATGATGAATTGTTTGAGTTGTGGGACC
GTGGAGTCGATAAGGGAATGA

Synonyms

Publications