jgi.p|Nanoce1779_2|554806, mRNA_4847 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554806
Unique NamemRNA_4847
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1622
Alignment locationscaffold_9:765945..767566 -

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Properties
Property NameValue
TranscriptId554892
TrackFilteredModels2
ProteinId554806
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:765945..767566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554806gene_4847Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554806mRNA_4847-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4847CDS_4847Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4847 ID=mRNA_4847|Name=jgi.p|Nanoce1779_2|554806|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp
GCAGCAGCAGCAGCAGCAGCAGCCACAGCAGCCGCCCCCTCCTTCCTCCA
TCTCCTCCCCCTCCTCCTCCTCTCCCTCCTCCACCAACCCCACCAAATCC
TCCTTTTCCTCTGCCGCCGCCTCCTCCACGTATCCCTCCATCGTCTCCGC
AGCGGCACTTGGAGGCATGGCTCCAGCTCCGACCCTTTTGCCTCTCCCTC
TACTGACACTCTACCCAGCAGGAGGAGGAGGAGGAGGAGCAATAGCAACA
ACAGCGGGGACAGCAGCATCCACACTCCAGCGACCCCTCATTAAAACGGC
TGGAGAAGATGATGGAGTCTCGACCTTGTCCTCCTCCCCTGCCTACCACA
CCAGCAACGGCAAACGCAAGCTCCCTACTCCATGGACCCCTGAAGAAGAC
GCACGTCTTAGAGAAGGCATTCGGATCGTCGGTCCTCGACAATGGCAACG
CATCGCGCAGGAGTTCCTTCAGGGTACCCGGAGCGAGACGCAGTGCTACC
AGCGTTGGGAACGTACGTTGAAGCCGGGAGTTAAGACCGGACCGTGGACC
GCGGACGAAGACGCCATTTTGCTGGCCTGTGTGCAGGCAGGGATGACGCG
CTGGTCGGAAATTTCCAAGCGGATCCCGGGGAGGTTGAGCAAGAGGGTTC
GGGAACGATGGACGTGTCAGCTGAACCCGGATAAGAGGAGCAAAGGCCTG
GCGCCGTGGACGAAGGAGGAGGAGAAGACAATGGAGGAGGCGAGGGAGCG
ACTGGGGAACAGGTGGGTGGAAATTGCCAAGCTGCTTCCCGGGAGGAGTG
AGAATGACGTGAAGAACAAGGCTTATTGCACTCTGCGGAAGGTTGAGCGG
AAGGAGAAGCGTGCAAGGGTGCAGAGGGAGAAATCCCTTCTGGTGAGGAG
CTCCTTCCCTTCCTCGTCCTCCTCCCCTCCTTCCTCCTCACTGGCTGCCG
CTTTGCTCTTGTCCTCGGCGCAAAAAGGACAACAGAAGGAGAGGAGGGGG
AGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGGAGATGACGTT
GGAGGAGGTGATAGACAGTAAGACGTTAACGGAAGCAAAAGATACGCTCT
CAGCCATCTACAAGGCAGCTCTGGATGAGAATGACGATGAGGAGGAGGAG
GGGAAGGAGGAAGAGGAGGAGGGACAGAAAAAGGGAGCAGGAGAGAAAAC
AGGGAAGGGAGGGAGGGAGGGAGGGAGGATCAATAAATCTGTGATAGAAG
ATGAAGATAACGCGGAGGACTCGGGGGAGGAAAGGGAGGAGGAAGAGGAG
GAAAAAGTGCATAGGCTAAGCGAGCGAGGGAAGCGAAGGAATGAATAGAG
GAGGGTCGAGATGGCTTACTGTTCTCGTCGAAGTCAAAGTCGTTGTTTCC
GTGTAGAAAGGGAAGGTCTGTGGTTGTCCAAGGACAGAGCATGCCAGGGG
CAATCAGAGGAGAGAGGGGAATCGCGTCCACGAGAGGGTTGAAAAATGAT
CGGTACAAAGCAAAGTGTAGATGCGCACGTTTGAAAGACGACAAGTCGAC
GGTAAGGACTAGAAACAGAAATCTCCGACAAGGATGATGACTTTACTGAG
AATTTCTCACAAATCCATATCT
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protein sequence of jgi.p|Nanoce1779_2|554806

>mRNA_4847-protein ID=mRNA_4847-protein|Name=jgi.p|Nanoce1779_2|554806|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MAPAPTLLPLPLLTLYPAGGGGGGAIATTAGTAASTLQRPLIKTAGEDDG
VSTLSSSPAYHTSNGKRKLPTPWTPEEDARLREGIRIVGPRQWQRIAQEF
LQGTRSETQCYQRWERTLKPGVKTGPWTADEDAILLACVQAGMTRWSEIS
KRIPGRLSKRVRERWTCQLNPDKRSKGLAPWTKEEEKTMEEARERLGNRW
VEIAKLLPGRSENDVKNKAYCTLRKVERKEKRARVQREKSLLVRSSFPSS
SSSPPSSSLAAALLLSSAQKGQQKERRGRKGGRKGGRKGGREMTLEEVID
SKTLTEAKDTLSAIYKAALDENDDEEEEGKEEEEEGQKKGAGEKTGKGGR
EGGRINKSVIEDEDNAEDSGEEREEEEEEKVHRLSERGKRRNE*
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mRNA from alignment at scaffold_9:765945..767566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4847 ID=mRNA_4847|Name=jgi.p|Nanoce1779_2|554806|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at scaffold_9:765945..767566- (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCCACAGCAGCCGCCCCCTCCTTCCTCCA
TCTCCTCCCCCTCCTCCTCCTCTCCCTCCTCCACCAACCCCACCAAATCC
TCCTTTTCCTCTGCCGCCGCCTCCTCCACGTATCCCTCCATCGTCTCCGC
AGCGGCACTTGGAGGCATGGCTCCAGCTCCGACCCTTTTGCCTCTCCCTC
TACTGACACTCTACCCAGCAGGAGGAGGAGGAGGAGGAGCAATAGCAACA
ACAGCGGGGACAGCAGCATCCACACTCCAGCGACCCCTCATTAAAACGGC
TGGAGAAGATGATGGAGTCTCGACCTTGTCCTCCTCCCCTGCCTACCACA
CCAGCAACGGCAAACGCAAGCTCCCTACTCCATGGACCCCTGAAGAAGAC
GCACGTCTTAGAGAAGGCATTCGGATCGTCGGTCCTCGACAATGGCAACG
CATCGCGCAGGAGTTCCTTCAGGGTACCCGGAGCGAGACGCAGTGCTACC
AGCGTTGGGAACGTACGTTGAAGCCGGGAGTTAAGACCGGACCGTGGACC
GCGGACGAAGACGCCATTTTGCTGGCCTGTGTGCAGGCAGGGATGACGCG
CTGGTCGGAAATTTCCAAGCGGATCCCGGGGAGGTTGAGCAAGAGGGTTC
GGGAACGATGGACGTGTCAGCTGAACCCGGATAAGAGGAGCAAAGGCCTG
GCGCCGTGGACGAAGGAGGAGGAGAAGACAATGGAGGAGGCGAGGGAGCG
ACTGGGGAACAGGTGGGTGGAAATTGCCAAGCTGCTTCCCGGGAGGAGTG
AGAATGACGTGAAGAACAAGGCTTATTGCACTCTGCGGAAGGTTGAGCGG
AAGGAGAAGCGTGCAAGGGTGCAGAGGGAGAAATCCCTTCTGGTGAGGAG
CTCCTTCCCTTCCTCGTCCTCCTCCCCTCCTTCCTCCTCACTGGCTGCCG
CTTTGCTCTTGTCCTCGGCGCAAAAAGGACAACAGAAGGAGAGGAGGGGG
AGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGGAGATGACGTT
GGAGGAGGTGATAGACAGTAAGACGTTAACGGAAGCAAAAGATACGCTCT
CAGCCATCTACAAGGCAGCTCTGGATGAGAATGACGATGAGGAGGAGGAG
GGGAAGGAGGAAGAGGAGGAGGGACAGAAAAAGGGAGCAGGAGAGAAAAC
AGGGAAGGGAGGGAGGGAGGGAGGGAGGATCAATAAATCTGTGATAGAAG
ATGAAGATAACGCGGAGGACTCGGGGGAGGAAAGGGAGGAGGAAGAGGAG
GAAAAAGTGCATAGGCTAAGCGAGCGAGGGAAGCGAAGGAATGAATAGAG
GAGGGTCGAGATGGCTTACTGTTCTCGTCGAAGTCAAAGTCGTTGTTTCC
GTGTAGAAAGGGAAGGTCTGTGGTTGTCCAAGGACAGAGCATGCCAGGGG
CAATCAGAGGAGAGAGGGGAATCGCGTCCACGAGAGGGTTGAAAAATGAT
CGGTACAAAGCAAAGTGTAGATGCGCACGTTTGAAAGACGACAAGTCGAC
GGTAAGGACTAGAAACAGAAATCTCCGACAAGGATGATGACTTTACTGAG
AATTTCTCACAAATCCATATCT
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Coding sequence (CDS) from alignment at scaffold_9:765945..767566-

>mRNA_4847 ID=mRNA_4847|Name=jgi.p|Nanoce1779_2|554806|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_9:765945..767566- (Nannochloropsis oceanica)
ATGGCTCCAGCTCCGACCCTTTTGCCTCTCCCTCTACTGACACTCTACCC
AGCAGGAGGAGGAGGAGGAGGAGCAATAGCAACAACAGCGGGGACAGCAG
CATCCACACTCCAGCGACCCCTCATTAAAACGGCTGGAGAAGATGATGGA
GTCTCGACCTTGTCCTCCTCCCCTGCCTACCACACCAGCAACGGCAAACG
CAAGCTCCCTACTCCATGGACCCCTGAAGAAGACGCACGTCTTAGAGAAG
GCATTCGGATCGTCGGTCCTCGACAATGGCAACGCATCGCGCAGGAGTTC
CTTCAGGGTACCCGGAGCGAGACGCAGTGCTACCAGCGTTGGGAACGTAC
GTTGAAGCCGGGAGTTAAGACCGGACCGTGGACCGCGGACGAAGACGCCA
TTTTGCTGGCCTGTGTGCAGGCAGGGATGACGCGCTGGTCGGAAATTTCC
AAGCGGATCCCGGGGAGGTTGAGCAAGAGGGTTCGGGAACGATGGACGTG
TCAGCTGAACCCGGATAAGAGGAGCAAAGGCCTGGCGCCGTGGACGAAGG
AGGAGGAGAAGACAATGGAGGAGGCGAGGGAGCGACTGGGGAACAGGTGG
GTGGAAATTGCCAAGCTGCTTCCCGGGAGGAGTGAGAATGACGTGAAGAA
CAAGGCTTATTGCACTCTGCGGAAGGTTGAGCGGAAGGAGAAGCGTGCAA
GGGTGCAGAGGGAGAAATCCCTTCTGGTGAGGAGCTCCTTCCCTTCCTCG
TCCTCCTCCCCTCCTTCCTCCTCACTGGCTGCCGCTTTGCTCTTGTCCTC
GGCGCAAAAAGGACAACAGAAGGAGAGGAGGGGGAGGAAGGGAGGGAGGA
AGGGAGGGAGGAAGGGAGGGAGGGAGATGACGTTGGAGGAGGTGATAGAC
AGTAAGACGTTAACGGAAGCAAAAGATACGCTCTCAGCCATCTACAAGGC
AGCTCTGGATGAGAATGACGATGAGGAGGAGGAGGGGAAGGAGGAAGAGG
AGGAGGGACAGAAAAAGGGAGCAGGAGAGAAAACAGGGAAGGGAGGGAGG
GAGGGAGGGAGGATCAATAAATCTGTGATAGAAGATGAAGATAACGCGGA
GGACTCGGGGGAGGAAAGGGAGGAGGAAGAGGAGGAAAAAGTGCATAGGC
TAAGCGAGCGAGGGAAGCGAAGGAATGAATAG
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Synonyms
Publications