jgi.p|Nanoce1779_2|588084, mRNA_4845 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588084
Unique NamemRNA_4845
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1212
Alignment locationscaffold_9:761973..763331 -

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Properties
Property NameValue
TranscriptId588170
TrackFilteredModels2
ProteinId588084
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:761973..763331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588084gene_4845Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588084mRNA_4845-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4845CDS_4845Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4845 ID=mRNA_4845|Name=jgi.p|Nanoce1779_2|588084|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
CAGGCGAATGCAACCCCCCCGCCGCGGCCAACGTGCTGCCGCTGCCGTGG
TCGTGCTGCTTCGTATAATCGTTGTTCTACTTCTTTTGTCCTCAAGCAAC
GGCTTTTCCTCTTCCTTCGTCCCCACCGCCGCCAGCACCACCGGCACTGC
CCGCACGCGCTCTACATTCACCCGCCTTTCCATGCGTGCAGCTTTAGTGT
ACGAAGCCAAAGCCGGCAGCCCTTTGCTCGAGGCTATGTCGCAAGCCGTT
GGACAGGCCTTGTATAAAGACGCCAGTGCATGCGCCCTGGAGCCCACCAC
CGGCGGTGGCTCCGCAGGGGGTGGAGGGGCGTCGACTGGCGCGGCTAAAG
ACACAAAATCCGGGGCCAAATATTTTTACAAGTCCACGGGCCTCTGGGGA
TTGAATATGTTGCTGGCGGAATATAAGGGAATCAAGGCCATGCATGATAC
ACAGACGATTCGAACACCTACACCAGTGGCGGTGGGAACATCGGACAGCC
AGGCGTTCGTGGTGTTCGAATACTTGAGCATGGGGGGGAGCAGAGGCGAG
GCCGCTGCCCGGATGGGGAAGGAGCTTGCTCAGATGCACCGACACACGAG
CAAAAACGGGAAATTTGGTTGGGACATTGACAACACCATTGGGGCCACCC
TACAACCTAATGGGTGGAAAGAGTCGTGGGTTGATTTTTGGGACGAGCGA
CGGCTAGGACACATGCTTCGGCTGTGCAGGAGAGAAGGGTGTGATTTTGG
GGGGGTGGAAGGGGAGCTACGGACGAAGGTTCGCGCAATATTGACGGAGG
GCGGGTATGCGCCGCAGCCGTCACTGTTGCATGGAGACTTGTGGACGGGC
AATACAGGGGTGACGGATGAGGGGTCGATGTGTATTTTTGACCCCGCTAC
GTACTATGGTGATAGAGAAACAGACCTGGCAATGACGACATTGTTTGGGT
CGTTGGCGCCTGATTTCTACAAAGCATACGTTGAAGAGTGGCCTTTGGAG
GAAGGGCATGAAAAGAGAAAAACAGTTTATAATTTATATCACATACTTAA
TCACATCGTGCTTTTTGGTGGTGGGTACCGAAGCCAGGCGCAAAGGATGA
TTGACCAAATTATGAAGATGTAGAAGGAAAGAGAGAAGGGCGTAGGACGG
AGATTGACTAAATGGGAGCGACAAACGAAAGTCAGACGAAGAAAGCTCAA
ATTCTAAGAAAA
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protein sequence of jgi.p|Nanoce1779_2|588084

>mRNA_4845-protein ID=mRNA_4845-protein|Name=jgi.p|Nanoce1779_2|588084|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MQPPRRGQRAAAAVVVLLRIIVVLLLLSSSNGFSSSFVPTAASTTGTART
RSTFTRLSMRAALVYEAKAGSPLLEAMSQAVGQALYKDASACALEPTTGG
GSAGGGGASTGAAKDTKSGAKYFYKSTGLWGLNMLLAEYKGIKAMHDTQT
IRTPTPVAVGTSDSQAFVVFEYLSMGGSRGEAAARMGKELAQMHRHTSKN
GKFGWDIDNTIGATLQPNGWKESWVDFWDERRLGHMLRLCRREGCDFGGV
EGELRTKVRAILTEGGYAPQPSLLHGDLWTGNTGVTDEGSMCIFDPATYY
GDRETDLAMTTLFGSLAPDFYKAYVEEWPLEEGHEKRKTVYNLYHILNHI
VLFGGGYRSQAQRMIDQIMKM*
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mRNA from alignment at scaffold_9:761973..763331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4845 ID=mRNA_4845|Name=jgi.p|Nanoce1779_2|588084|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold_9:761973..763331- (Nannochloropsis oceanica)
CAGGCGAATGCAACCCCCCCGCCGCGGCCAACGTGCTGCCGCTGCCGTGG
TCGTGCTGCTTCGTATAATCGTTGTTCTACTTCTTTTGTCCTCAAGCAAC
GGCTTTTCCTCTTCCTTCGTCCCCACCGCCGCCAGCACCACCGGCACTGC
CCGCACGCGCTCTACATTCACCCGCCTTTCCATGCGTGCAGCTTTAGTGT
ACGAAGCCAAAGCCGGCAGCCCTTTGCTCGAGGCTATGTCGCAAGCCGTT
GGACAGGCCTTGTATAAAGACGCCAGTGCATGCGCCCTGGAGCCCACCAC
CGGCGGTGGCTCCGCAGGGGGTGGAGGGGCGTCGACTGGCGCGGCTAAAG
ACACAAAATCCGGGGCCAAATATTTTTACAAGTCCACGGGCCTCTGGGGA
TTGAATATGTTGCTGGCGGAATATAAGGGAATCAAGGCCATGCATGATAC
ACAGACGATTCGAACACCTACACCAGTGGCGGTGGGAACATCGGACAGCC
AGGCGTTCGTGGTGTTCGAATACTTGAGCATGGGGGGGAGCAGGTAAGCT
GATGGGAGAAGAAAAAGTGCAAGGCAAGATAAAGGAGTAAGAGGCATAGA
TTAAGGATACGCTTTAATTCACATTCTCATTCTACCTCTTATATTACCTT
ATTCTTCTCCCCCGAAACCCGTACTTATCACCGCCTGCAGAGGCGAGGCC
GCTGCCCGGATGGGGAAGGAGCTTGCTCAGATGCACCGACACACGAGCAA
AAACGGGAAATTTGGTTGGGACATTGACAACACCATTGGGGCCACCCTAC
AACCTAATGGGTGGAAAGAGTCGTGGGTTGATTTTTGGGACGAGCGACGG
CTAGGACACATGCTTCGGCTGTGCAGGAGAGAAGGGTGTGATTTTGGGGG
GGTGGAAGGGGAGCTACGGACGAAGGTTCGCGCAATATTGACGGAGGGCG
GGTATGCGCCGCAGCCGTCACTGTTGCATGGAGACTTGTGGACGGGCAAT
ACAGGGGTGACGGATGAGGGGTCGATGTGTATTTTTGACCCCGCTACGTA
CTATGGTGATAGAGAAACAGACCTGGCAATGACGACATTGTTTGGGTCGT
TGGCGCCTGATTTCTACAAAGCATACGTTGAAGAGTGGCCTTTGGAGGAA
GGGCATGAAAAGAGAAAAACAGTTTATAATTTATATCACATACTTAATCA
CATCGTGCTTTTTGGTGGTGGGTACCGAAGCCAGGCGCAAAGGATGATTG
ACCAAATTATGAAGATGTAGAAGGAAAGAGAGAAGGGCGTAGGACGGAGA
TTGACTAAATGGGAGCGACAAACGAAAGTCAGACGAAGAAAGCTCAAATT
CTAAGAAAA
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Coding sequence (CDS) from alignment at scaffold_9:761973..763331-

>mRNA_4845 ID=mRNA_4845|Name=jgi.p|Nanoce1779_2|588084|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_9:761973..763331- (Nannochloropsis oceanica)
AGGCGAGGCCGCTGCCCGGATGGGGAAGGAGCTTGCTCAGATGCACCGAC
ACACGAGCAAAAACGGGAAATTTGGTTGGGACATTGACAACACCATTGGG
GCCACCCTACAACCTAATGGGTGGAAAGAGTCGTGGGTTGATTTTTGGGA
CGAGCGACGGCTAGGACACATGCTTCGGCTGTGCAGGAGAGAAGGGTGTG
ATTTTGGGGGGGTGGAAGGGGAGCTACGGACGAAGGTTCGCGCAATATTG
ACGGAGGGCGGGTATGCGCCGCAGCCGTCACTGTTGCATGGAGACTTGTG
GACGGGCAATACAGGGGTGACGGATGAGGGGTCGATGTGTATTTTTGACC
CCGCTACGTACTATGGTGATAGAGAAACAGACCTGGCAATGACGACATTG
TTTGGGTCGTTGGCGCCTGATTTCTACAAAGCATACGTTGAAGAGTGGCC
TTTGGAGGAAGGGCATGAAAAGAGAAAAACAGTTTATAATTTATATCACA
TACTTAATCACATCGTGCTTTTTGGTGGTGGGTACCGAAGCCAGGCGCAA
AGGATGATTGACCAAATTATGAAGATGTAGATGCAACCCCCCCGCCGCGG
CCAACGTGCTGCCGCTGCCGTGGTCGTGCTGCTTCGTATAATCGTTGTTC
TACTTCTTTTGTCCTCAAGCAACGGCTTTTCCTCTTCCTTCGTCCCCACC
GCCGCCAGCACCACCGGCACTGCCCGCACGCGCTCTACATTCACCCGCCT
TTCCATGCGTGCAGCTTTAGTGTACGAAGCCAAAGCCGGCAGCCCTTTGC
TCGAGGCTATGTCGCAAGCCGTTGGACAGGCCTTGTATAAAGACGCCAGT
GCATGCGCCCTGGAGCCCACCACCGGCGGTGGCTCCGCAGGGGGTGGAGG
GGCGTCGACTGGCGCGGCTAAAGACACAAAATCCGGGGCCAAATATTTTT
ACAAGTCCACGGGCCTCTGGGGATTGAATATGTTGCTGGCGGAATATAAG
GGAATCAAGGCCATGCATGATACACAGACGATTCGAACACCTACACCAGT
GGCGGTGGGAACATCGGACAGCCAGGCGTTCGTGGTGTTCGAATACTTGA
GCATGGGGGGGAGCAGAGGCGAGGCCGCTGCCCGGATGGGGAAGGAGCTT
GCTCAGATGCACCGACACACGAGCAAAAACGGGAAATTTGGTTGGGACAT
TGACAACACCATTGGGGCCACCCTACAACCTAATGGGTGGAAAGAGTCGT
GGGTTGATTTTTGGGACGAGCGACGGCTAGGACACATGCTTCGGCTGTGC
AGGAGAGAAGGGTGTGATTTTGGGGGGGTGGAAGGGGAGCTACGGACGAA
GGTTCGCGCAATATTGACGGAGGGCGGGTATGCGCCGCAGCCGTCACTGT
TGCATGGAGACTTGTGGACGGGCAATACAGGGGTGACGGATGAGGGGTCG
ATGTGTATTTTTGACCCCGCTACGTACTATGGTGATAGAGAAACAGACCT
GGCAATGACGACATTGTTTGGGTCGTTGGCGCCTGATTTCTACAAAGCAT
ACGTTGAAGAGTGGCCTTTGGAGGAAGGGCATGAAAAGAGAAAAACAGTT
TATAATTTATATCACATACTTAATCACATCGTGCTTTTTGGTGGTGGGTA
CCGAAGCCAGGCGCAAAGGATGATTGACCAAATTATGAAGATGTAGATGC
AACCCCCCCGCCGCGGCCAACGTGCTGCCGCTGCCGTGGTCGTGCTGCTT
CGTATAATCGTTGTTCTACTTCTTTTGTCCTCAAGCAACGGCTTTTCCTC
TTCCTTCGTCCCCACCGCCGCCAGCACCACCGGCACTGCCCGCACGCGCT
CTACATTCACCCGCCTTTCCATGCGTGCAGCTTTAGTGTACGAAGCCAAA
GCCGGCAGCCCTTTGCTCGAGGCTATGTCGCAAGCCGTTGGACAGGCCTT
GTATAAAGACGCCAGTGCATGCGCCCTGGAGCCCACCACCGGCGGTGGCT
CCGCAGGGGGTGGAGGGGCGTCGACTGGCGCGGCTAAAGACACAAAATCC
GGGGCCAAATATTTTTACAAGTCCACGGGCCTCTGGGGATTGAATATGTT
GCTGGCGGAATATAAGGGAATCAAGGCCATGCATGATACACAGACGATTC
GAACACCTACACCAGTGGCGGTGGGAACATCGGACAGCCAGGCGTTCGTG
GTGTTCGAATACTTGAGCATGGGGGGGAGCAG
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Synonyms
Publications