jgi.p|Nanoce1779_2|588083, mRNA_4844 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588083
Unique Name	mRNA_4844
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2296
Alignment location	scaffold_9:759677..761972 +

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Properties


Property Name	Value
TranscriptId	588169
Track	FilteredModels2
ProteinId	588083

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:759677..761972 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588083	gene_4844	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588083	mRNA_4844-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4844	CDS_4844	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:759677..761972+
coding sequence from alignment at scaffold_9:759677..761972+

mRNA sequence

>mRNA_4844 ID=mRNA_4844|Name=jgi.p|Nanoce1779_2|588083|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp
ACAGAGCACTTGCTACCCTCCCGCGCCGAGGCCGAAAACAAGATCGTTGC
TTCTTCCCGCCCGAGTTATAACCCGCACATCTCAAAAGCTACGCCGTGAC
CGAAATGGCCTCCTTCGATTCCGGTGAGATCAAGCGTTTGGTGCTTGTGA
CCGATGCGTGGCAGCCCCAGGTGAACGGCGTGGTTCGAACACTTAATACG
ACCACACACGTCCTCCGCGCCTTAGGCGTCGAGGTGCACGTTATCAGTCC
TCAAGAATTCAACACAGTACCTTGTCCAACCTATCCCAGCATCCAATTGG
CGGTGCTACCGGGCGAGAAAGTGCGGAGGCGTATCACTGAACTGGCTCCT
CACGCACTGCACGTGGCGACGGAAGGGCCTCTGGGGTGGGCAGCGCGCAA
CTTTGCGGTGGAGCTTGGCATCCCCTTCACGACGGCTGTGCATACTCGCT
TCCCAGAGTATGTGTACGCGCGCTTGGCCTTGCCCTTGCGTATCACCTAT
CGTTATCTCCGATGGTTCCATTTTCATTCCAAAGCGATAATGGTCCCTAC
ACCTATGGTCAAGCGTGATTTGGAGGGTCATGGTTTTGAGAATGTCCAAC
TGTGGAGCCGCGGTGTCGATACAGACGTCTTTCACACCCCCGCTGCAGGC
ATTCGTTTGCCTGCGAGTGATTCGACCTACCCCATCTTTTTGTACGCAGG
CCGCGTAGCAGTAGAAAAGAACGTTGAAGCCTTCTTGGCATTGGACTTGC
CCGGGCAGAAGTGGGTTGTGGGGGACGGGCCCGCCTTGGAGGGGCTACAA
GCCGCTTATCCCGAAGCCCGCTATTTTGGATTTTTGAACCAGACGGAGTT
GGCCAAGATTTATCAGCAGTCGAGCGTTTTTGTATTTCCCAGCAAGACGG
ATACCTTTGGGCTTGTTCTACTTGAGGCCATGGCAACAGGGCTGCCCGTA
GCCGCATATCCCGTCTCAGGGCCGATTGATGTCGTCAGCACTTCCGGTGC
GGGTGTATTAGACAATGACCTGCGCTCGGCGTGTCTGCGGGCATTGAACA
TTGATCCGGCCGTGGCTCGAGCGCATGCGGAGAAATACTCGTGGACGGCG
GCGACGCAAATGTTTGCCTCGAATTTGCAGTATATCTCACCGTTTATCTT
TGCGGAAGGGGTGCGGGAGTGGAGCAACGCCAGATTCCTAGACGATGGGA
GCAATGATTTGGTCTCGTCGTTGCCCGCGCATTTGGTAAACTGGTTGGAC
AAGACGGGAGCGGTGGAGGAGGAGGGGATAGTAGGCGGCCGATTGATTCG
GAGGGCTGTCGAGGCGGCAGAAGCCGCAAAGTCGGAGACCCCCATCTCTC
TAACATTCCCACCAGCTGAAACCGCGACGTCAACTTTCTCCTCCAGCAAC
AGCAGCAACAATAGCAGCAGCAGCAGCACGCCATGCTTGCAGGCGGCCAC
GAGTGAGGACCCTTTCCTGAACCCGGGGGGAAATGGAGGGCCAAGCTCGG
ATTTGACGTTTGGGGTGCACCATTACGATAGCACCTCCTGGACGTACTTG
ATGGTGGTGTGTATGGGTGCAACAATGGTTGGAAATTATGTGGCCTCATT
TTTCTTCAAGGCTCGCGGAGGGAAGAGCATGGGTTTTGGGGCGACGACGA
GGAGGGCGCCAATATTCAGGAGGCCACTGTTGCTGTCCGGCGATGATGGT
CGCAGTGTCGGGAGTATCACTCCGCCCCTGTCCCCTGCTTCAACGTGCAG
TCATACGAACTCGTTCCACGAGGACGCCCTCTGGTAACTTTGTGGAGGCA
TAAAAAAGAATTTGTTTCATAGAGCTTTACAAATATATTAAGAGCGCGAT
GGGCTGGTCCCTCATGTCTGATTGAATGCATGTTTGTGCAACCTGTGTTT
CCTATAAGTCTATTCTCGGTAAAGATCAGAAAGAGTGAGCCGTGAATCCT
ATTTTTGTTTTTGTATGTTTTCGTGTTACAATGTTTAAAATAAGCACACC
CCTGCACGGGTGTCTTTCTTTGTGAGGTAGAATGAATAATGTGGGTGAGG
CTTTTATCAAGAATAAAAAGTTCTAATCTAAACCCAGGAGAACGAGCAAT
GAAATGCAAACACGGTTTCACGACGTAAATCTGTTGGAGTGATGGCATAA
TGTTGATGTTCCGACAGTCAAATACAAAAACAAAAAAAGGGGTGCATCCA
ACCGATTTGTAAGCATTTTCCAACAATGAGCAGCAATCCAAACCATCGAC
TGGAAAACCACGACAGAAAGAACATCAGTTATTAACGCAAGATAAA

protein sequence of jgi.p|Nanoce1779_2|588083

>mRNA_4844-protein ID=mRNA_4844-protein|Name=jgi.p|Nanoce1779_2|588083|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MASFDSGEIKRLVLVTDAWQPQVNGVVRTLNTTTHVLRALGVEVHVISPQ
EFNTVPCPTYPSIQLAVLPGEKVRRRITELAPHALHVATEGPLGWAARNF
AVELGIPFTTAVHTRFPEYVYARLALPLRITYRYLRWFHFHSKAIMVPTP
MVKRDLEGHGFENVQLWSRGVDTDVFHTPAAGIRLPASDSTYPIFLYAGR
VAVEKNVEAFLALDLPGQKWVVGDGPALEGLQAAYPEARYFGFLNQTELA
KIYQQSSVFVFPSKTDTFGLVLLEAMATGLPVAAYPVSGPIDVVSTSGAG
VLDNDLRSACLRALNIDPAVARAHAEKYSWTAATQMFASNLQYISPFIFA
EGVREWSNARFLDDGSNDLVSSLPAHLVNWLDKTGAVEEEGIVGGRLIRR
AVEAAEAAKSETPISLTFPPAETATSTFSSSNSSNNSSSSSTPCLQAATS
EDPFLNPGGNGGPSSDLTFGVHHYDSTSWTYLMVVCMGATMVGNYVASFF
FKARGGKSMGFGATTRRAPIFRRPLLLSGDDGRSVGSITPPLSPASTCSH
TNSFHEDALW*

mRNA from alignment at scaffold_9:759677..761972+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4844 ID=mRNA_4844|Name=jgi.p|Nanoce1779_2|588083|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp|location=Sequence derived from alignment at scaffold_9:759677..761972+ (Nannochloropsis oceanica)
ACAGAGCACTTGCTACCCTCCCGCGCCGAGGCCGAAAACAAGATCGTTGC
TTCTTCCCGCCCGAGTTATAACCCGCACATCTCAAAAGCTACGCCGTGAC
CGAAATGGCCTCCTTCGATTCCGGTGAGATCAAGCGTTTGGTGCTTGTGA
CCGATGCGTGGCAGCCCCAGGTGAACGGCGTGGTTCGAACACTTAATACG
ACCACACACGTCCTCCGCGCCTTAGGCGTCGAGGTGCACGTTATCAGTCC
TCAAGAATTCAACACAGTACCTTGTCCAACCTATCCCAGCATCCAATTGG
CGGTGCTACCGGGCGAGAAAGTGCGGAGGCGTATCACTGAACTGGCTCCT
CACGCACTGCACGTGGCGACGGAAGGGCCTCTGGGGTGGGCAGCGCGCAA
CTTTGCGGTGGAGCTTGGCATCCCCTTCACGACGGCTGTGCATACTCGCT
TCCCAGAGTATGTGTACGCGCGCTTGGCCTTGCCCTTGCGTATCACCTAT
CGTTATCTCCGATGGTTCCATTTTCATTCCAAAGCGATAATGGTCCCTAC
ACCTATGGTCAAGCGTGATTTGGAGGGTCATGGTTTTGAGAATGTCCAAC
TGTGGAGCCGCGGTGTCGATACAGACGTCTTTCACACCCCCGCTGCAGGC
ATTCGTTTGCCTGCGAGTGATTCGACCTACCCCATCTTTTTGTACGCAGG
CCGCGTAGCAGTAGAAAAGAACGTTGAAGCCTTCTTGGCATTGGACTTGC
CCGGGCAGAAGTGGGTTGTGGGGGACGGGCCCGCCTTGGAGGGGCTACAA
GCCGCTTATCCCGAAGCCCGCTATTTTGGATTTTTGAACCAGACGGAGTT
GGCCAAGATTTATCAGCAGTCGAGCGTTTTTGTATTTCCCAGCAAGACGG
ATACCTTTGGGCTTGTTCTACTTGAGGCCATGGCAACAGGGCTGCCCGTA
GCCGCATATCCCGTCTCAGGGCCGATTGATGTCGTCAGCACTTCCGGTGC
GGGTGTATTAGACAATGACCTGCGCTCGGCGTGTCTGCGGGCATTGAACA
TTGATCCGGCCGTGGCTCGAGCGCATGCGGAGAAATACTCGTGGACGGCG
GCGACGCAAATGTTTGCCTCGAATTTGCAGTATATCTCACCGTTTATCTT
TGCGGAAGGGGTGCGGGAGTGGAGCAACGCCAGATTCCTAGACGATGGGA
GCAATGATTTGGTCTCGTCGTTGCCCGCGCATTTGGTAAACTGGTTGGAC
AAGACGGGAGCGGTGGAGGAGGAGGGGATAGTAGGCGGCCGATTGATTCG
GAGGGCTGTCGAGGCGGCAGAAGCCGCAAAGTCGGAGACCCCCATCTCTC
TAACATTCCCACCAGCTGAAACCGCGACGTCAACTTTCTCCTCCAGCAAC
AGCAGCAACAATAGCAGCAGCAGCAGCACGCCATGCTTGCAGGCGGCCAC
GAGTGAGGACCCTTTCCTGAACCCGGGGGGAAATGGAGGGCCAAGCTCGG
ATTTGACGTTTGGGGTGCACCATTACGATAGCACCTCCTGGACGTACTTG
ATGGTGGTGTGTATGGGTGCAACAATGGTTGGAAATTATGTGGCCTCATT
TTTCTTCAAGGCTCGCGGAGGGAAGAGCATGGGTTTTGGGGCGACGACGA
GGAGGGCGCCAATATTCAGGAGGCCACTGTTGCTGTCCGGCGATGATGGT
CGCAGTGTCGGGAGTATCACTCCGCCCCTGTCCCCTGCTTCAACGTGCAG
TCATACGAACTCGTTCCACGAGGACGCCCTCTGGTAACTTTGTGGAGGCA
TAAAAAAGAATTTGTTTCATAGAGCTTTACAAATATATTAAGAGCGCGAT
GGGCTGGTCCCTCATGTCTGATTGAATGCATGTTTGTGCAACCTGTGTTT
CCTATAAGTCTATTCTCGGTAAAGATCAGAAAGAGTGAGCCGTGAATCCT
ATTTTTGTTTTTGTATGTTTTCGTGTTACAATGTTTAAAATAAGCACACC
CCTGCACGGGTGTCTTTCTTTGTGAGGTAGAATGAATAATGTGGGTGAGG
CTTTTATCAAGAATAAAAAGTTCTAATCTAAACCCAGGAGAACGAGCAAT
GAAATGCAAACACGGTTTCACGACGTAAATCTGTTGGAGTGATGGCATAA
TGTTGATGTTCCGACAGTCAAATACAAAAACAAAAAAAGGGGTGCATCCA
ACCGATTTGTAAGCATTTTCCAACAATGAGCAGCAATCCAAACCATCGAC
TGGAAAACCACGACAGAAAGAACATCAGTTATTAACGCAAGATAAA

Coding sequence (CDS) from alignment at scaffold_9:759677..761972+

>mRNA_4844 ID=mRNA_4844|Name=jgi.p|Nanoce1779_2|588083|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at scaffold_9:759677..761972+ (Nannochloropsis oceanica)
ATGGCCTCCTTCGATTCCGGTGAGATCAAGCGTTTGGTGCTTGTGACCGA
TGCGTGGCAGCCCCAGGTGAACGGCGTGGTTCGAACACTTAATACGACCA
CACACGTCCTCCGCGCCTTAGGCGTCGAGGTGCACGTTATCAGTCCTCAA
GAATTCAACACAGTACCTTGTCCAACCTATCCCAGCATCCAATTGGCGGT
GCTACCGGGCGAGAAAGTGCGGAGGCGTATCACTGAACTGGCTCCTCACG
CACTGCACGTGGCGACGGAAGGGCCTCTGGGGTGGGCAGCGCGCAACTTT
GCGGTGGAGCTTGGCATCCCCTTCACGACGGCTGTGCATACTCGCTTCCC
AGAGTATGTGTACGCGCGCTTGGCCTTGCCCTTGCGTATCACCTATCGTT
ATCTCCGATGGTTCCATTTTCATTCCAAAGCGATAATGGTCCCTACACCT
ATGGTCAAGCGTGATTTGGAGGGTCATGGTTTTGAGAATGTCCAACTGTG
GAGCCGCGGTGTCGATACAGACGTCTTTCACACCCCCGCTGCAGGCATTC
GTTTGCCTGCGAGTGATTCGACCTACCCCATCTTTTTGTACGCAGGCCGC
GTAGCAGTAGAAAAGAACGTTGAAGCCTTCTTGGCATTGGACTTGCCCGG
GCAGAAGTGGGTTGTGGGGGACGGGCCCGCCTTGGAGGGGCTACAAGCCG
CTTATCCCGAAGCCCGCTATTTTGGATTTTTGAACCAGACGGAGTTGGCC
AAGATTTATCAGCAGTCGAGCGTTTTTGTATTTCCCAGCAAGACGGATAC
CTTTGGGCTTGTTCTACTTGAGGCCATGGCAACAGGGCTGCCCGTAGCCG
CATATCCCGTCTCAGGGCCGATTGATGTCGTCAGCACTTCCGGTGCGGGT
GTATTAGACAATGACCTGCGCTCGGCGTGTCTGCGGGCATTGAACATTGA
TCCGGCCGTGGCTCGAGCGCATGCGGAGAAATACTCGTGGACGGCGGCGA
CGCAAATGTTTGCCTCGAATTTGCAGTATATCTCACCGTTTATCTTTGCG
GAAGGGGTGCGGGAGTGGAGCAACGCCAGATTCCTAGACGATGGGAGCAA
TGATTTGGTCTCGTCGTTGCCCGCGCATTTGGTAAACTGGTTGGACAAGA
CGGGAGCGGTGGAGGAGGAGGGGATAGTAGGCGGCCGATTGATTCGGAGG
GCTGTCGAGGCGGCAGAAGCCGCAAAGTCGGAGACCCCCATCTCTCTAAC
ATTCCCACCAGCTGAAACCGCGACGTCAACTTTCTCCTCCAGCAACAGCA
GCAACAATAGCAGCAGCAGCAGCACGCCATGCTTGCAGGCGGCCACGAGT
GAGGACCCTTTCCTGAACCCGGGGGGAAATGGAGGGCCAAGCTCGGATTT
GACGTTTGGGGTGCACCATTACGATAGCACCTCCTGGACGTACTTGATGG
TGGTGTGTATGGGTGCAACAATGGTTGGAAATTATGTGGCCTCATTTTTC
TTCAAGGCTCGCGGAGGGAAGAGCATGGGTTTTGGGGCGACGACGAGGAG
GGCGCCAATATTCAGGAGGCCACTGTTGCTGTCCGGCGATGATGGTCGCA
GTGTCGGGAGTATCACTCCGCCCCTGTCCCCTGCTTCAACGTGCAGTCAT
ACGAACTCGTTCCACGAGGACGCCCTCTGGTAA

Synonyms

Publications