jgi.p|Nanoce1779_2|444570, mRNA_4843 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|444570
Unique Name	mRNA_4843
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2563
Alignment location	scaffold_9:756631..759193 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	444656
Track	FilteredModels2
ProteinId	444570

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:756631..759193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|444570	gene_4843	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|444570	mRNA_4843-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4843	CDS_4843	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:756631..759193+
coding sequence from alignment at scaffold_9:756631..759193+

mRNA sequence

>mRNA_4843 ID=mRNA_4843|Name=jgi.p|Nanoce1779_2|444570|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp
CAAGGGGGTGGTGTGATAAGTGAGAGATTGGTGACTTCAGAAACATCCGA
CCAAAACAATGCTTACATCATAACACACGTGAGACTGAGGCTGGGGGAGT
GAGGTGTGAAGCATGCGTCGTGAGTGGGGCTCTCGTAAGCGAGAGAGGAC
TTCGAAGGTCCCTCTTCGAACGAGTCCCAAGTCCGCCACTCTGTTCTCGC
ATTCGTGCTTGCTTTCCTGTGTCCCACGCTTTCACTCACATGCAAGCTTT
CGCCTACCTCTGTGACACAGGCATCCTGAAAGCACCGCGGGACCTTCAGC
ATCCAACCAATCGAGCACAAGGCTAGTGCTCTTCATCTGCACGCTCCTTA
TCACAAAAGCAACAGCAAGAACAGCACATCGAATTCTCCAGCAGCACACG
CAAACACACCGGATCACATCCCTCGCAACAAGGGCAAGCCATGAACTTCC
TCCTCGGTGGCGGCGGACCTGTGCGGCCCAATTTGCCCCCTCATCTCATG
GATGAAGGGGAGCGTGGGGCAGACCTCGTGGAAAAAGCAACCTCCGACAT
TTTGCTTGCCGTCGATTGGGCCATCAATATGGAAGTCGTCGACGCATTAA
ACCGTGCCAGCGACCAAGAAATCAAGCGGGAGATAATCCGTCAGATTCGA
AAGAGGCTGCAGCACCGCTCCACCCGCGTCGTGCACATGGCGTTGGATCT
GATCGAGACCGTGGTTAAGAACTGCGGACCCTCCGTGCACCGCGAAGTGG
CCACGCCTAAATTCATGGCGAGCATGTCAAGAATCGCTCGGAACTACCTG
GACCGAACGGGAAAGGAAAATCTGGAGGTGGGGGAGAAGGCAATGGACTT
GATCCAGGCGTGGGGAGAAGCGTTTCTGCCTATGTCACAGAGCCTGCCAT
TGTTTTCTCGGACCTACCACGAGTTACGAAGGGAGGGGATGCCGTTCCGA
CAGCAGTACGATGAGACCAAGGTCCCCATTATGACGCCTCCGCCCTCGGC
GCCTTCAGCAAGGGGAAGTGGACAGTTCAACTTCGCAGGAGAGATTGGAG
GGGGGGAAGGAGGGAGGGACGGGGGGGAAGAGGTGGATTTGTTGAAAATG
GTGGAGACTAGCGAGACGATGCTTCACGAGATTTTGTATTCGATTGAGAG
CTCTCATGAATTAGGGAGTGGTAATGAGGTGTTGCATGCGGTGTTGGGGC
AGTGCGCGAAATTGGGTAGGGTCTTACAGCAGGAAATCGAGTCCAAAGTT
CTGACAGGAGCGGAGGATTTGGAGCAGTATTTTGGGGCCAATGACCAATT
GCAGGCCACGTTACATCTATACCAAGGCATGAAAGATCGGACGATAGCCT
TACCGTTGCCCCAGGAAGGACGGTGTCAGGGACGGGCGGGGGGTGGGGAG
GGGCAGCAGCAGCCGGAGAAGGAGCTGATTTCGTTTGATGATGATTTTTT
GGTTGGTCTGGGGGATGGTGGAGGGAAGGCGGGGGGGGATACGAAAGTGT
CGGCGGCAGAGCTGGGGACGACTCTCACCACCAGCAATGCTGCTGCTGCC
GCTGGTGGTGGCGAGACAGAAGCTCCCATGCTGGCCCCGTCCCGTCGGGA
CAGCTTTGGGCGAAGTCGTCGGGGGTCGAGGGGGAGTGCGGGGAGCAGGG
GAGCAGGGGATGATTTGCTGGATCTAGGCAATTTAGATGCTGGAAGCAAT
GCGAATGGAGTGGGTGGAGGAAACGCCCTTGCCGCCTCTCGTACAGGCAC
GGGTGCCTTCTCGTCCGTGTCCAGCCCAGCGAGCGATCCCCCTCAATTCG
CTATCATGCCTGCACCTCCCGCCGACCCCTTTGCCTCCGGTCCTCCTGTT
CCCATCCTCCCTCCTCCCCGCTCTCTAGGATCACCGCCCGGAAAGCAAGG
CAACACTACCACTGCGGGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAACATCAATAGCAGCAGCAGCAGCAGTAGCAGTAGTTTGAAGTAT
CCGTCGACGGGTGTGGCGCCGCAGCCACCTTCAGCCTTCTTTTCTTTGCC
GGGAGGAGTAGGAGGGAGTATGGGGGGAGGGATGGGCGGAGGGCTGAACG
GGGGCAGTACTCACATGTCTTTCGTTGGCTCCACACAACCTACCTCGTCG
GCGACTGGCATGCAAGCATCGCCGCCACTGTCTTCCGGCTTCGTCTCGAC
GGGTGGGGGGAGCTTGAGTGTGAGCCAATCGGGTGGGGATGGGGGAGGAC
AAAGGACGATGTATGGTGCGCAAAGTGATAGCTTTTTGCAACAGCACCAA
CAGTTTGCGCCATCATCCTATCCGCCTGCCGTGCCTGGAGGGTGGCAGCA
GCAGCAATGGCCCCAGCAATCGCAGCCACAGCCGTGGCAACAAGCATCGG
AGCCGCAGCAGGGACAGAGACCATCGTCTGCTGGGCCGCAGCCACCAAAG
CCACAGGCGCAGCAAGACAATCCCTTCGACGCATTTATGTAGAATTGCAT
TTATGTGTGTTACTAGAGTATGGAGAAGATGAAAGATAAATAAATGAAAA
CAGTTGGGTTGTG

protein sequence of jgi.p|Nanoce1779_2|444570

>mRNA_4843-protein ID=mRNA_4843-protein|Name=jgi.p|Nanoce1779_2|444570|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MNFLLGGGGPVRPNLPPHLMDEGERGADLVEKATSDILLAVDWAINMEVV
DALNRASDQEIKREIIRQIRKRLQHRSTRVVHMALDLIETVVKNCGPSVH
REVATPKFMASMSRIARNYLDRTGKENLEVGEKAMDLIQAWGEAFLPMSQ
SLPLFSRTYHELRREGMPFRQQYDETKVPIMTPPPSAPSARGSGQFNFAG
EIGGGEGGRDGGEEVDLLKMVETSETMLHEILYSIESSHELGSGNEVLHA
VLGQCAKLGRVLQQEIESKVLTGAEDLEQYFGANDQLQATLHLYQGMKDR
TIALPLPQEGRCQGRAGGGEGQQQPEKELISFDDDFLVGLGDGGGKAGGD
TKVSAAELGTTLTTSNAAAAAGGGETEAPMLAPSRRDSFGRSRRGSRGSA
GSRGAGDDLLDLGNLDAGSNANGVGGGNALAASRTGTGAFSSVSSPASDP
PQFAIMPAPPADPFASGPPVPILPPPRSLGSPPGKQGNTTTAGSSSSSSS
SSSNSNINSSSSSSSSSLKYPSTGVAPQPPSAFFSLPGGVGGSMGGGMGG
GLNGGSTHMSFVGSTQPTSSATGMQASPPLSSGFVSTGGGSLSVSQSGGD
GGGQRTMYGAQSDSFLQQHQQFAPSSYPPAVPGGWQQQQWPQQSQPQPWQ
QASEPQQGQRPSSAGPQPPKPQAQQDNPFDAFM*

mRNA from alignment at scaffold_9:756631..759193+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4843 ID=mRNA_4843|Name=jgi.p|Nanoce1779_2|444570|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp|location=Sequence derived from alignment at scaffold_9:756631..759193+ (Nannochloropsis oceanica)
CAAGGGGGTGGTGTGATAAGTGAGAGATTGGTGACTTCAGAAACATCCGA
CCAAAACAATGCTTACATCATAACACACGTGAGACTGAGGCTGGGGGAGT
GAGGTGTGAAGCATGCGTCGTGAGTGGGGCTCTCGTAAGCGAGAGAGGAC
TTCGAAGGTCCCTCTTCGAACGAGTCCCAAGTCCGCCACTCTGTTCTCGC
ATTCGTGCTTGCTTTCCTGTGTCCCACGCTTTCACTCACATGCAAGCTTT
CGCCTACCTCTGTGACACAGGCATCCTGAAAGCACCGCGGGACCTTCAGC
ATCCAACCAATCGAGCACAAGGCTAGTGCTCTTCATCTGCACGCTCCTTA
TCACAAAAGCAACAGCAAGAACAGCACATCGAATTCTCCAGCAGCACACG
CAAACACACCGGATCACATCCCTCGCAACAAGGGCAAGCCATGAACTTCC
TCCTCGGTGGCGGCGGACCTGTGCGGCCCAATTTGCCCCCTCATCTCATG
GATGAAGGGGAGCGTGGGGCAGACCTCGTGGAAAAAGCAACCTCCGACAT
TTTGCTTGCCGTCGATTGGGCCATCAATATGGAAGTCGTCGACGCATTAA
ACCGTGCCAGCGACCAAGAAATCAAGCGGGAGATAATCCGTCAGATTCGA
AAGAGGCTGCAGCACCGCTCCACCCGCGTCGTGCACATGGCGTTGGATCT
GATCGAGACCGTGGTTAAGAACTGCGGACCCTCCGTGCACCGCGAAGTGG
CCACGCCTAAATTCATGGCGAGCATGTCAAGAATCGCTCGGAACTACCTG
GACCGAACGGGAAAGGAAAATCTGGAGGTGGGGGAGAAGGCAATGGACTT
GATCCAGGCGTGGGGAGAAGCGTTTCTGCCTATGTCACAGAGCCTGCCAT
TGTTTTCTCGGACCTACCACGAGTTACGAAGGGAGGGGATGCCGTTCCGA
CAGCAGTACGATGAGACCAAGGTCCCCATTATGACGCCTCCGCCCTCGGC
GCCTTCAGCAAGGGGAAGTGGACAGTTCAACTTCGCAGGAGAGATTGGAG
GGGGGGAAGGAGGGAGGGACGGGGGGGAAGAGGTGGATTTGTTGAAAATG
GTGGAGACTAGCGAGACGATGCTTCACGAGATTTTGTATTCGATTGAGAG
CTCTCATGAATTAGGGAGTGGTAATGAGGTGTTGCATGCGGTGTTGGGGC
AGTGCGCGAAATTGGGTAGGGTCTTACAGCAGGAAATCGAGTCCAAAGTT
CTGACAGGAGCGGAGGATTTGGAGCAGTATTTTGGGGCCAATGACCAATT
GCAGGCCACGTTACATCTATACCAAGGCATGAAAGATCGGACGATAGCCT
TACCGTTGCCCCAGGAAGGACGGTGTCAGGGACGGGCGGGGGGTGGGGAG
GGGCAGCAGCAGCCGGAGAAGGAGCTGATTTCGTTTGATGATGATTTTTT
GGTTGGTCTGGGGGATGGTGGAGGGAAGGCGGGGGGGGATACGAAAGTGT
CGGCGGCAGAGCTGGGGACGACTCTCACCACCAGCAATGCTGCTGCTGCC
GCTGGTGGTGGCGAGACAGAAGCTCCCATGCTGGCCCCGTCCCGTCGGGA
CAGCTTTGGGCGAAGTCGTCGGGGGTCGAGGGGGAGTGCGGGGAGCAGGG
GAGCAGGGGATGATTTGCTGGATCTAGGCAATTTAGATGCTGGAAGCAAT
GCGAATGGAGTGGGTGGAGGAAACGCCCTTGCCGCCTCTCGTACAGGCAC
GGGTGCCTTCTCGTCCGTGTCCAGCCCAGCGAGCGATCCCCCTCAATTCG
CTATCATGCCTGCACCTCCCGCCGACCCCTTTGCCTCCGGTCCTCCTGTT
CCCATCCTCCCTCCTCCCCGCTCTCTAGGATCACCGCCCGGAAAGCAAGG
CAACACTACCACTGCGGGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAACATCAATAGCAGCAGCAGCAGCAGTAGCAGTAGTTTGAAGTAT
CCGTCGACGGGTGTGGCGCCGCAGCCACCTTCAGCCTTCTTTTCTTTGCC
GGGAGGAGTAGGAGGGAGTATGGGGGGAGGGATGGGCGGAGGGCTGAACG
GGGGCAGTACTCACATGTCTTTCGTTGGCTCCACACAACCTACCTCGTCG
GCGACTGGCATGCAAGCATCGCCGCCACTGTCTTCCGGCTTCGTCTCGAC
GGGTGGGGGGAGCTTGAGTGTGAGCCAATCGGGTGGGGATGGGGGAGGAC
AAAGGACGATGTATGGTGCGCAAAGTGATAGCTTTTTGCAACAGCACCAA
CAGTTTGCGCCATCATCCTATCCGCCTGCCGTGCCTGGAGGGTGGCAGCA
GCAGCAATGGCCCCAGCAATCGCAGCCACAGCCGTGGCAACAAGCATCGG
AGCCGCAGCAGGGACAGAGACCATCGTCTGCTGGGCCGCAGCCACCAAAG
CCACAGGCGCAGCAAGACAATCCCTTCGACGCATTTATGTAGAATTGCAT
TTATGTGTGTTACTAGAGTATGGAGAAGATGAAAGATAAATAAATGAAAA
CAGTTGGGTTGTG

Coding sequence (CDS) from alignment at scaffold_9:756631..759193+

>mRNA_4843 ID=mRNA_4843|Name=jgi.p|Nanoce1779_2|444570|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_9:756631..759193+ (Nannochloropsis oceanica)
ATGAACTTCCTCCTCGGTGGCGGCGGACCTGTGCGGCCCAATTTGCCCCC
TCATCTCATGGATGAAGGGGAGCGTGGGGCAGACCTCGTGGAAAAAGCAA
CCTCCGACATTTTGCTTGCCGTCGATTGGGCCATCAATATGGAAGTCGTC
GACGCATTAAACCGTGCCAGCGACCAAGAAATCAAGCGGGAGATAATCCG
TCAGATTCGAAAGAGGCTGCAGCACCGCTCCACCCGCGTCGTGCACATGG
CGTTGGATCTGATCGAGACCGTGGTTAAGAACTGCGGACCCTCCGTGCAC
CGCGAAGTGGCCACGCCTAAATTCATGGCGAGCATGTCAAGAATCGCTCG
GAACTACCTGGACCGAACGGGAAAGGAAAATCTGGAGGTGGGGGAGAAGG
CAATGGACTTGATCCAGGCGTGGGGAGAAGCGTTTCTGCCTATGTCACAG
AGCCTGCCATTGTTTTCTCGGACCTACCACGAGTTACGAAGGGAGGGGAT
GCCGTTCCGACAGCAGTACGATGAGACCAAGGTCCCCATTATGACGCCTC
CGCCCTCGGCGCCTTCAGCAAGGGGAAGTGGACAGTTCAACTTCGCAGGA
GAGATTGGAGGGGGGGAAGGAGGGAGGGACGGGGGGGAAGAGGTGGATTT
GTTGAAAATGGTGGAGACTAGCGAGACGATGCTTCACGAGATTTTGTATT
CGATTGAGAGCTCTCATGAATTAGGGAGTGGTAATGAGGTGTTGCATGCG
GTGTTGGGGCAGTGCGCGAAATTGGGTAGGGTCTTACAGCAGGAAATCGA
GTCCAAAGTTCTGACAGGAGCGGAGGATTTGGAGCAGTATTTTGGGGCCA
ATGACCAATTGCAGGCCACGTTACATCTATACCAAGGCATGAAAGATCGG
ACGATAGCCTTACCGTTGCCCCAGGAAGGACGGTGTCAGGGACGGGCGGG
GGGTGGGGAGGGGCAGCAGCAGCCGGAGAAGGAGCTGATTTCGTTTGATG
ATGATTTTTTGGTTGGTCTGGGGGATGGTGGAGGGAAGGCGGGGGGGGAT
ACGAAAGTGTCGGCGGCAGAGCTGGGGACGACTCTCACCACCAGCAATGC
TGCTGCTGCCGCTGGTGGTGGCGAGACAGAAGCTCCCATGCTGGCCCCGT
CCCGTCGGGACAGCTTTGGGCGAAGTCGTCGGGGGTCGAGGGGGAGTGCG
GGGAGCAGGGGAGCAGGGGATGATTTGCTGGATCTAGGCAATTTAGATGC
TGGAAGCAATGCGAATGGAGTGGGTGGAGGAAACGCCCTTGCCGCCTCTC
GTACAGGCACGGGTGCCTTCTCGTCCGTGTCCAGCCCAGCGAGCGATCCC
CCTCAATTCGCTATCATGCCTGCACCTCCCGCCGACCCCTTTGCCTCCGG
TCCTCCTGTTCCCATCCTCCCTCCTCCCCGCTCTCTAGGATCACCGCCCG
GAAAGCAAGGCAACACTACCACTGCGGGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAACATCAATAGCAGCAGCAGCAGCAGTAGCAGTAG
TTTGAAGTATCCGTCGACGGGTGTGGCGCCGCAGCCACCTTCAGCCTTCT
TTTCTTTGCCGGGAGGAGTAGGAGGGAGTATGGGGGGAGGGATGGGCGGA
GGGCTGAACGGGGGCAGTACTCACATGTCTTTCGTTGGCTCCACACAACC
TACCTCGTCGGCGACTGGCATGCAAGCATCGCCGCCACTGTCTTCCGGCT
TCGTCTCGACGGGTGGGGGGAGCTTGAGTGTGAGCCAATCGGGTGGGGAT
GGGGGAGGACAAAGGACGATGTATGGTGCGCAAAGTGATAGCTTTTTGCA
ACAGCACCAACAGTTTGCGCCATCATCCTATCCGCCTGCCGTGCCTGGAG
GGTGGCAGCAGCAGCAATGGCCCCAGCAATCGCAGCCACAGCCGTGGCAA
CAAGCATCGGAGCCGCAGCAGGGACAGAGACCATCGTCTGCTGGGCCGCA
GCCACCAAAGCCACAGGCGCAGCAAGACAATCCCTTCGACGCATTTATGT
AG

Synonyms

Publications