jgi.p|Nanoce1779_2|588074, mRNA_4842 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588074
Unique Name	mRNA_4842
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1282
Alignment location	scaffold_9:754843..756616 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588160
Track	FilteredModels2
ProteinId	588074

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:754843..756616 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588074	gene_4842	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588074	mRNA_4842-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4842	CDS_4842	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:754843..756616-
coding sequence from alignment at scaffold_9:754843..756616-

mRNA sequence

>mRNA_4842 ID=mRNA_4842|Name=jgi.p|Nanoce1779_2|588074|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
ACAGCCATGTACGGCCAGGACCAAGGGCCAAAGAAGTACGGGCTGACGAT
CCCGAAAAAGAAGCCGCTGCCGGGCATGCGCGGACGGCCTGCCCCTGCCT
CTACCGCAGCCCGTCGTCGCCCGCCTGGTAGTGCCTTTTCATTAGACAAC
GATGATTCTGATGAGGAGGGTGGAGACGATGACCTGGCGTCCAAGGCCTC
GTACAATAAGATGCTACAGGCTCGCAGTGCCAAGGCCCAAAAACAATTGG
AAGAAGCTGAAGCTGCTGCCCGTGCCACCGACCCATCCATCTACGACTAT
GATGGTGTGTACGACACCATGCAAGCGGAACGCCAAGAACGGGCCAAGAT
TATCACAGAAGCGGCCAAGGAAGAAAAAAAATCATCCAAATACATCGATG
GATTAAAGCGAGCGGCTGAGTTGAAGAAACAGGAGCAGGATCGATTTTAC
GAGCGGAGGTTGGCCAAGGAGAGAAAGGAGGAGGACGAGCTGTACAAAGA
CAAGGAGGTGTTTGTCACGAGCGCCTATAAGAAGAAATTAATGGAAATGA
AGAAATGGGACACCATCGACAAGCTCGAGGAAGAGGCCGCCCAACGCCGC
GAAGACGAAGCGGCAGGCAGGGGTTCAAAAGCGGGAGGGAAAGGAGGAGG
AGGAAGTGGGATGGACGCATTTTTTTCGAATTTGCTCACGAAGAACATTG
CGATGGGTGCGGATGTCAAGACTGCGGCTCGATCAGCATATACGGTTGGG
TCGAAGCAACAGGAATATGCGTTTGGCACGTCCTTGCCCGCGTCTGGTGG
TGGTGGTGGTGGTGATAATGATACTGGTGATGGTGGTGGTGGTAAGCACC
GGCAGGAGGTAGAGTTAGAAGAGGATAAAAGGATCTCGAGTCGGATGGTA
GACAGCAGCGTCGATGGCACCAAGCTGCCGAAACGGCCTCGGGAAGAGGA
GGAGGATGAGGAGTCAGGAGGAGCGGTGGGGACAGGAGCGGCAGAGCTTG
AGAAAAGGCACCAAATCGCTGCCATGGCTCCAGCACCATCGCCACCAGCG
GCAGTCCGCGAGGAGGAGGAGAAGGAAGAAGGAAAAGAAAGTACAGGAGC
AGCTGGAGCAGCAGGAGCAGCAGCAGCGACTGTGGATCCTGCGGAGGCCA
AGCGGCAAAAGGACGAGGCCATTCGCAAGGCCCGGGAACGCTTCTTGGCC
CGGAAGAAAGGGGGCGCCGGCGGGGGACAGGGACAAAGCGCGCCTTGAAA
ACAAAATAAAAATAAAAATAAATTATATCGCA

protein sequence of jgi.p|Nanoce1779_2|588074

>mRNA_4842-protein ID=mRNA_4842-protein|Name=jgi.p|Nanoce1779_2|588074|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MYGQDQGPKKYGLTIPKKKPLPGMRGRPAPASTAARRRPPGSAFSLDNDD
SDEEGGDDDLASKASYNKMLQARSAKAQKQLEEAEAAARATDPSIYDYDG
VYDTMQAERQERAKIITEAAKEEKKSSKYIDGLKRAAELKKQEQDRFYER
RLAKERKEEDELYKDKEVFVTSAYKKKLMEMKKWDTIDKLEEEAAQRRED
EAAGRGSKAGGKGGGGSGMDAFFSNLLTKNIAMGADVKTAARSAYTVGSK
QQEYAFGTSLPASGGGGGGDNDTGDGGGGKHRQEVELEEDKRISSRMVDS
SVDGTKLPKRPREEEEDEESGGAVGTGAAELEKRHQIAAMAPAPSPPAAV
REEEEKEEGKESTGAAGAAGAAAATVDPAEAKRQKDEAIRKARERFLARK
KGGAGGGQGQSAP*

mRNA from alignment at scaffold_9:754843..756616-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4842 ID=mRNA_4842|Name=jgi.p|Nanoce1779_2|588074|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp|location=Sequence derived from alignment at scaffold_9:754843..756616- (Nannochloropsis oceanica)
ACAGCCATGTACGGCCAGGACCAAGGGCCAAAGAAGTACGGGCTGACGAT
CCCGAAAAAGAAGCCGCTGCCGGGCATGCGCGGACGGCCTGCCCCTGCCT
CTACCGCAGCCCGTCGTCGCCCGCCTGGTAGTGCCTTTTCATTAGACAAC
GATGATTCTGATGAGGAGGGTGGAGACGATGACCTGGCGTCCAAGGCCTC
GTACAATAAGATGCTACAGGTACGCAACAGCGAGTGTGTGGGATTCGTGC
TAGTATGTGTTTGGTGTGGGGTGCGGTGGAACGTTGTGTGTGTGCCCTGA
GGAGAGAAAGACGAATATGTGACGCTTGTGCTGGTATACATTTGGGGAGG
GGGACGGTGGAGCGTTGCGTGAATGCCCTGAGTCTCTCCCCAAACTTCCT
CCTCTCCTCCTCCCCGCTGCCTTCTCCATACGGTCACAATACCGTCGCGC
TTTATGTTTATTCAGCACCAATCGTCCACTCCCTATTCTCTCATAAACAG
GCTCGCAGTGCCAAGGCCCAAAAACAATTGGAAGAAGCTGAAGCTGCTGC
CCGTGCCACCGACCCATCCATCTACGACTATGATGGTGTGTACGACACCA
TGCAAGCGGAACGCCAAGAACGGGCCAAGATTATCACAGAAGCGGCCAAG
GAAGAAAAAAAATCATCCAAATACATCGATGGATTAAAGCGAGCGGCTGA
GTTGAAGAAACAGGAGCAGGATCGATTTTACGAGCGGAGGTTGGCCAAGG
AGAGAAAGGAGGAGGACGAGCTGTACAAAGACAAGGAGGTGTTTGGTACG
TACTCACCGGGCCGGGGATGGAGATGGGCAGGAGAAAGGAAGGAGGAGTG
TTTTGGAGGTGCAATAATACCTTGATCTTCGTATCATATCCCTTTGACTT
GGCGTGTCGCAGCGTGTGTAACGTATGTGTGTGGGCGATGGACGTGCTGT
ATGCATCTTCACATAAATGTCTCTCACCCTCCGTCCTTCCCTCCTTCCAC
AATCAGTCACGAGCGCCTATAAGAAGAAATTAATGGAAATGAAGAAATGG
GACACCATCGACAAGCTCGAGGAAGAGGCCGCCCAACGCCGCGAAGACGA
AGCGGCAGGCAGGGGTTCAAAAGCGGGAGGGAAAGGAGGAGGAGGAAGTG
GGATGGACGCATTTTTTTCGAATTTGCTCACGAAGAACATTGCGATGGGT
GCGGATGTCAAGACTGCGGCTCGATCAGCATATACGGTTGGGTCGAAGCA
ACAGGAATATGCGTTTGGCACGTCCTTGCCCGCGTCTGGTGGTGGTGGTG
GTGGTGATAATGATACTGGTGATGGTGGTGGTGGTAAGCACCGGCAGGAG
GTAGAGTTAGAAGAGGATAAAAGGATCTCGAGTCGGATGGTAGACAGCAG
CGTCGATGGCACCAAGCTGCCGAAACGGCCTCGGGAAGAGGAGGAGGATG
AGGAGTCAGGAGGAGCGGTGGGGACAGGAGCGGCAGAGCTTGAGAAAAGG
CACCAAATCGCTGCCATGGCTCCAGCACCATCGCCACCAGCGGCAGTCCG
CGAGGAGGAGGAGAAGGAAGAAGGAAAAGAAAGTACAGGAGCAGCTGGAG
CAGCAGGAGCAGCAGCAGCGACTGTGGATCCTGCGGAGGCCAAGCGGCAA
AAGGACGAGGCCATTCGCAAGGCCCGGGAACGCTTCTTGGCCCGGAAGAA
AGGGGGCGCCGGCGGGGGACAGGGACAAAGCGCGCCTTGAAAACAAAATA
AAAATAAAAATAAATTATATCGCA

Coding sequence (CDS) from alignment at scaffold_9:754843..756616-

>mRNA_4842 ID=mRNA_4842|Name=jgi.p|Nanoce1779_2|588074|organism=Nannochloropsis oceanica|type=CDS|length=3726bp|location=Sequence derived from alignment at scaffold_9:754843..756616- (Nannochloropsis oceanica)
TCACGAGCGCCTATAAGAAGAAATTAATGGAAATGAAGAAATGGGACACC
ATCGACAAGCTCGAGGAAGAGGCCGCCCAACGCCGCGAAGACGAAGCGGC
AGGCAGGGGTTCAAAAGCGGGAGGGAAAGGAGGAGGAGGAAGTGGGATGG
ACGCATTTTTTTCGAATTTGCTCACGAAGAACATTGCGATGGGTGCGGAT
GTCAAGACTGCGGCTCGATCAGCATATACGGTTGGGTCGAAGCAACAGGA
ATATGCGTTTGGCACGTCCTTGCCCGCGTCTGGTGGTGGTGGTGGTGGTG
ATAATGATACTGGTGATGGTGGTGGTGGTAAGCACCGGCAGGAGGTAGAG
TTAGAAGAGGATAAAAGGATCTCGAGTCGGATGGTAGACAGCAGCGTCGA
TGGCACCAAGCTGCCGAAACGGCCTCGGGAAGAGGAGGAGGATGAGGAGT
CAGGAGGAGCGGTGGGGACAGGAGCGGCAGAGCTTGAGAAAAGGCACCAA
ATCGCTGCCATGGCTCCAGCACCATCGCCACCAGCGGCAGTCCGCGAGGA
GGAGGAGAAGGAAGAAGGAAAAGAAAGTACAGGAGCAGCTGGAGCAGCAG
GAGCAGCAGCAGCGACTGTGGATCCTGCGGAGGCCAAGCGGCAAAAGGAC
GAGGCCATTCGCAAGGCCCGGGAACGCTTCTTGGCCCGGAAGAAAGGGGG
CGCCGGCGGGGGACAGGGACAAAGCGCGCCTTGAGCTCGCAGTGCCAAGG
CCCAAAAACAATTGGAAGAAGCTGAAGCTGCTGCCCGTGCCACCGACCCA
TCCATCTACGACTATGATGGTGTGTACGACACCATGCAAGCGGAACGCCA
AGAACGGGCCAAGATTATCACAGAAGCGGCCAAGGAAGAAAAAAAATCAT
CCAAATACATCGATGGATTAAAGCGAGCGGCTGAGTTGAAGAAACAGGAG
CAGGATCGATTTTACGAGCGGAGGTTGGCCAAGGAGAGAAAGGAGGAGGA
CGAGCTGTACAAAGACAAGGAGGTGTTTGATGTACGGCCAGGACCAAGGG
CCAAAGAAGTACGGGCTGACGATCCCGAAAAAGAAGCCGCTGCCGGGCAT
GCGCGGACGGCCTGCCCCTGCCTCTACCGCAGCCCGTCGTCGCCCGCCTG
GTAGTGCCTTTTCATTAGACAACGATGATTCTGATGAGGAGGGTGGAGAC
GATGACCTGGCGTCCAAGGCCTCGTACAATAAGATGCTACAGTCACGAGC
GCCTATAAGAAGAAATTAATGGAAATGAAGAAATGGGACACCATCGACAA
GCTCGAGGAAGAGGCCGCCCAACGCCGCGAAGACGAAGCGGCAGGCAGGG
GTTCAAAAGCGGGAGGGAAAGGAGGAGGAGGAAGTGGGATGGACGCATTT
TTTTCGAATTTGCTCACGAAGAACATTGCGATGGGTGCGGATGTCAAGAC
TGCGGCTCGATCAGCATATACGGTTGGGTCGAAGCAACAGGAATATGCGT
TTGGCACGTCCTTGCCCGCGTCTGGTGGTGGTGGTGGTGGTGATAATGAT
ACTGGTGATGGTGGTGGTGGTAAGCACCGGCAGGAGGTAGAGTTAGAAGA
GGATAAAAGGATCTCGAGTCGGATGGTAGACAGCAGCGTCGATGGCACCA
AGCTGCCGAAACGGCCTCGGGAAGAGGAGGAGGATGAGGAGTCAGGAGGA
GCGGTGGGGACAGGAGCGGCAGAGCTTGAGAAAAGGCACCAAATCGCTGC
CATGGCTCCAGCACCATCGCCACCAGCGGCAGTCCGCGAGGAGGAGGAGA
AGGAAGAAGGAAAAGAAAGTACAGGAGCAGCTGGAGCAGCAGGAGCAGCA
GCAGCGACTGTGGATCCTGCGGAGGCCAAGCGGCAAAAGGACGAGGCCAT
TCGCAAGGCCCGGGAACGCTTCTTGGCCCGGAAGAAAGGGGGCGCCGGCG
GGGGACAGGGACAAAGCGCGCCTTGAGCTCGCAGTGCCAAGGCCCAAAAA
CAATTGGAAGAAGCTGAAGCTGCTGCCCGTGCCACCGACCCATCCATCTA
CGACTATGATGGTGTGTACGACACCATGCAAGCGGAACGCCAAGAACGGG
CCAAGATTATCACAGAAGCGGCCAAGGAAGAAAAAAAATCATCCAAATAC
ATCGATGGATTAAAGCGAGCGGCTGAGTTGAAGAAACAGGAGCAGGATCG
ATTTTACGAGCGGAGGTTGGCCAAGGAGAGAAAGGAGGAGGACGAGCTGT
ACAAAGACAAGGAGGTGTTTGATGTACGGCCAGGACCAAGGGCCAAAGAA
GTACGGGCTGACGATCCCGAAAAAGAAGCCGCTGCCGGGCATGCGCGGAC
GGCCTGCCCCTGCCTCTACCGCAGCCCGTCGTCGCCCGCCTGGTAGTGCC
TTTTCATTAGACAACGATGATTCTGATGAGGAGGGTGGAGACGATGACCT
GGCGTCCAAGGCCTCGTACAATAAGATGCTACAGTCACGAGCGCCTATAA
GAAGAAATTAATGGAAATGAAGAAATGGGACACCATCGACAAGCTCGAGG
AAGAGGCCGCCCAACGCCGCGAAGACGAAGCGGCAGGCAGGGGTTCAAAA
GCGGGAGGGAAAGGAGGAGGAGGAAGTGGGATGGACGCATTTTTTTCGAA
TTTGCTCACGAAGAACATTGCGATGGGTGCGGATGTCAAGACTGCGGCTC
GATCAGCATATACGGTTGGGTCGAAGCAACAGGAATATGCGTTTGGCACG
TCCTTGCCCGCGTCTGGTGGTGGTGGTGGTGGTGATAATGATACTGGTGA
TGGTGGTGGTGGTAAGCACCGGCAGGAGGTAGAGTTAGAAGAGGATAAAA
GGATCTCGAGTCGGATGGTAGACAGCAGCGTCGATGGCACCAAGCTGCCG
AAACGGCCTCGGGAAGAGGAGGAGGATGAGGAGTCAGGAGGAGCGGTGGG
GACAGGAGCGGCAGAGCTTGAGAAAAGGCACCAAATCGCTGCCATGGCTC
CAGCACCATCGCCACCAGCGGCAGTCCGCGAGGAGGAGGAGAAGGAAGAA
GGAAAAGAAAGTACAGGAGCAGCTGGAGCAGCAGGAGCAGCAGCAGCGAC
TGTGGATCCTGCGGAGGCCAAGCGGCAAAAGGACGAGGCCATTCGCAAGG
CCCGGGAACGCTTCTTGGCCCGGAAGAAAGGGGGCGCCGGCGGGGGACAG
GGACAAAGCGCGCCTTGAGCTCGCAGTGCCAAGGCCCAAAAACAATTGGA
AGAAGCTGAAGCTGCTGCCCGTGCCACCGACCCATCCATCTACGACTATG
ATGGTGTGTACGACACCATGCAAGCGGAACGCCAAGAACGGGCCAAGATT
ATCACAGAAGCGGCCAAGGAAGAAAAAAAATCATCCAAATACATCGATGG
ATTAAAGCGAGCGGCTGAGTTGAAGAAACAGGAGCAGGATCGATTTTACG
AGCGGAGGTTGGCCAAGGAGAGAAAGGAGGAGGACGAGCTGTACAAAGAC
AAGGAGGTGTTTGATGTACGGCCAGGACCAAGGGCCAAAGAAGTACGGGC
TGACGATCCCGAAAAAGAAGCCGCTGCCGGGCATGCGCGGACGGCCTGCC
CCTGCCTCTACCGCAGCCCGTCGTCGCCCGCCTGGTAGTGCCTTTTCATT
AGACAACGATGATTCTGATGAGGAGGGTGGAGACGATGACCTGGCGTCCA
AGGCCTCGTACAATAAGATGCTACAG

Synonyms

Publications