jgi.p|Nanoce1779_2|630050, mRNA_4840 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630050
Unique Name	mRNA_4840
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1781
Alignment location	scaffold_9:750697..752697 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630136
Track	FilteredModels2
ProteinId	630050

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:750697..752697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630050	gene_4840	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630050	mRNA_4840-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4840	CDS_4840	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:750697..752697+
coding sequence from alignment at scaffold_9:750697..752697+

mRNA sequence

>mRNA_4840 ID=mRNA_4840|Name=jgi.p|Nanoce1779_2|630050|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp
CGTGAGATGAAAATCTCAACGTTTTTCCGTTGCCTCCTTCAAATATATGC
CTTCATCACACTCACTCACACACCACTCAAAGCACAGGCTAGCAAATAAC
GCCGACCATGGCGCCAGCAACCTCGTCATTGTCGTCGAATGACCCGAACA
AAGTCCCTATCTACGTGCCTTATCAAAAATTGACTGGTAAGAGGGACCTC
GATTGGCTCGTGAACAGAAAGCAGCTCCCGGCCAACTGGCATGAGTCGCT
TAAGCTTGTGAAAGAGGATTTACGAGCAGCCCTACGTGGGTTGGAGGAGG
GTGGGGGAGAAGTTGCGGTGTGGGTCAAAGGGAAGGAGAGTAGCGCCGTC
ACGTACTACACTTGTCAGCAAATCATGTCTCTGCTGGAAAGGACACAGCA
AGGCCGCACGAAGAATATCTTCGGGTCATACACCGTGGCGGTGCTCAAGA
CGTGGGATAGCATTTTGCGCGCGTATCGCAAGGACAACCTTTTTTTAGGG
GAAGCTGCGCAGTTACTGGCGACACATACCACCTACACTTGTCCCGCAGT
GCGTCGTCGAATTGCGGGGTATGATAAGCAGATCGAGGACTGCGATCGAC
GAATGGGAGAATATAGAAAAGCAATGACGGAGGGAAAAGTCCGCTTTCAC
ATGGCGTGTGGAGAGTGGAGTTTGAGCCCTGGGGAGGATGTTTGGGGGGA
GGGCAAGGAGGAGGTGGGGGAAGCGGATGAAAAGGAGGGAAAAGAGTGGA
GGAGGTCCTTGGTCGAGATGGCTCAGCAGGAATTACCGAGTATGATGGAG
GAGGTAGAGAAATTGTTGTGTGCGGAGGAAGTGGCGGAGGCCTTACTGTA
CTATCAGCAGGTGTGGTGCTTCCTTCATTCGTACGAGCGGAAGGAGGATG
GGAGGGAGGAAGAGGATACAGAAATTACGACGGAGTTCTTTCCTGTGCTC
TCCAAGGTGCGACGAGGGGAGAAGCTGTTAGCGGTAGAGGGAGTGGAGGA
GGAGGAGGAGGAGGAGGAAGGGCAGGGGGTGATGGAGATTAATTGGGGTG
CTGGTGCGCCTTCATCGGATGAGGTTGTGCCCGAGGGAGAAGGGGGAGGG
ATTGATTGGAATGAAGGAGGCGGAGGAGGACCGGAGAACGGCAGCAGCTT
CGAGCCTGTCGATAACGAAAGAGCAGTGAACTTCACATCGACCAGCAGCA
GCAGCAGTACTGACGCGAGCCCCCCATCCGCGACCGTGGCATCACCCAAA
ACGGGTCTGGAGGGGCAGCAGGGGGGATCCCTCCTTGCGGACGCCAGTCT
TCGGGCCGGGCTTGTGAACGATATGATGGAATTGGAGTCCTTCTTACAGC
AGCGGCGTCTGGAGGTTGGAGACACGAGCAATGTCGTTTTTGTGGGGCAG
TTTCAGGGGTCGCATGCCGCGTTGCAGCAGCAGTCCGTAAGTATGGTAGA
CAGATATCTTAATGCGGTCAAGCGTGCCTTGGGTGTGTTACGTGAGAAAC
GGCTGCAGCAATTGTGGCTAGTGTGTTCTTCGCCTGTGTATGCCGACAGG
GTAGTGCAGGGATTAATGCAGTATCGACGGCGTGTGCGGAAGCTGGACAA
GGCAAGACGGGAGACGGAGGGACGGAGGGAGGAAGCGGCGGAGGCGTTGG
CCAAGGCGTTGCCGGAATATGAGGCGATGGCGGCGGCGACGACTGCCTTG
AAGAAAAGGGTGGAAGAGTCGTTAAAGGAGTTGTTTAAGGGTAGGGATAT
TTTGATCACCGGGGGCGTAAATGCACTGTGA

protein sequence of jgi.p|Nanoce1779_2|630050

>mRNA_4840-protein ID=mRNA_4840-protein|Name=jgi.p|Nanoce1779_2|630050|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MAPATSSLSSNDPNKVPIYVPYQKLTGKRDLDWLVNRKQLPANWHESLKL
VKEDLRAALRGLEEGGGEVAVWVKGKESSAVTYYTCQQIMSLLERTQQGR
TKNIFGSYTVAVLKTWDSILRAYRKDNLFLGEAAQLLATHTTYTCPAVRR
RIAGYDKQIEDCDRRMGEYRKAMTEGKVRFHMACGEWSLSPGEDVWGEGK
EEVGEADEKEGKEWRRSLVEMAQQELPSMMEEVEKLLCAEEVAEALLYYQ
QVWCFLHSYERKEDGREEEDTEITTEFFPVLSKVRRGEKLLAVEGVEEEE
EEEEGQGVMEINWGAGAPSSDEVVPEGEGGGIDWNEGGGGGPENGSSFEP
VDNERAVNFTSTSSSSSTDASPPSATVASPKTGLEGQQGGSLLADASLRA
GLVNDMMELESFLQQRRLEVGDTSNVVFVGQFQGSHAALQQQSVSMVDRY
LNAVKRALGVLREKRLQQLWLVCSSPVYADRVVQGLMQYRRRVRKLDKAR
RETEGRREEAAEALAKALPEYEAMAAATTALKKRVEESLKELFKGRDILI
TGGVNAL*

mRNA from alignment at scaffold_9:750697..752697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4840 ID=mRNA_4840|Name=jgi.p|Nanoce1779_2|630050|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp|location=Sequence derived from alignment at scaffold_9:750697..752697+ (Nannochloropsis oceanica)
CGTGAGATGAAAATCTCAACGTTTTTCCGTTGCCTCCTTCAAATATATGC
CTTCATCACACTCACTCACACACCACTCAAAGCACAGGCTAGCAAATAAC
GCCGACCATGGCGCCAGCAACCTCGTCATTGTCGTCGAATGACCCGAACA
AAGTCCCTATCTACGTGCCTTATCAAAAATTGACTGGTAAGAGGGACCTC
GGTAAGAGAGACCTCATTCTCCGTACCTTTGCTGCCACACCGTTGGCGTG
CTTGCGGCGTCTTGTGATGCTGTACAATTGGAATGACCACATCGCCGCAG
GCAAAAGGCAGGGGACGCTATAAAGGAAAAGCTGCCAGGATTAGATGCGC
GCTTTCTGTTTGCTCACTCCTTCCCACCACTTGTCTTCCGTCACCCCCCG
ATCCGCAACACACAAACATAGATTGGCTCGTGAACAGAAAGCAGCTCCCG
GCCAACTGGCATGAGTCGCTTAAGCTTGTGAAAGAGGATTTACGAGCAGC
CCTACGTGGGTTGGAGGAGGGTGGGGGAGAAGTTGCGGTGTGGGTCAAAG
GGAAGGAGAGTAGCGCCGTCACGTACTACACTTGTCAGCAAATCATGTCT
CTGCTGGAAAGGACACAGCAAGGCCGCACGAAGAATATCTTCGGGTCATA
CACCGTGGCGGTGCTCAAGACGTGGGATAGCATTTTGCGCGCGTATCGCA
AGGACAACCTTTTTTTAGGGGAAGCTGCGCAGTTACTGGCGACACATACC
ACCTACACTTGTCCCGCAGTGCGTCGTCGAATTGCGGGGTATGATAAGCA
GATCGAGGACTGCGATCGACGAATGGGAGAATATAGAAAAGCAATGACGG
AGGGAAAAGTCCGCTTTCACATGGCGTGTGGAGAGTGGAGTTTGAGCCCT
GGGGAGGATGTTTGGGGGGAGGGCAAGGAGGAGGTGGGGGAAGCGGATGA
AAAGGAGGGAAAAGAGTGGAGGAGGTCCTTGGTCGAGATGGCTCAGCAGG
AATTACCGAGTATGATGGAGGAGGTAGAGAAATTGTTGTGTGCGGAGGAA
GTGGCGGAGGCCTTACTGTACTATCAGCAGGTGTGGTGCTTCCTTCATTC
GTACGAGCGGAAGGAGGATGGGAGGGAGGAAGAGGATACAGAAATTACGA
CGGAGTTCTTTCCTGTGCTCTCCAAGGTGCGACGAGGGGAGAAGCTGTTA
GCGGTAGAGGGAGTGGAGGAGGAGGAGGAGGAGGAGGAAGGGCAGGGGGT
GATGGAGATTAATTGGGGTGCTGGTGCGCCTTCATCGGATGAGGTTGTGC
CCGAGGGAGAAGGGGGAGGGATTGATTGGAATGAAGGAGGCGGAGGAGGA
CCGGAGAACGGCAGCAGCTTCGAGCCTGTCGATAACGAAAGAGCAGTGAA
CTTCACATCGACCAGCAGCAGCAGCAGTACTGACGCGAGCCCCCCATCCG
CGACCGTGGCATCACCCAAAACGGGTCTGGAGGGGCAGCAGGGGGGATCC
CTCCTTGCGGACGCCAGTCTTCGGGCCGGGCTTGTGAACGATATGATGGA
ATTGGAGTCCTTCTTACAGCAGCGGCGTCTGGAGGTTGGAGACACGAGCA
ATGTCGTTTTTGTGGGGCAGTTTCAGGGGTCGCATGCCGCGTTGCAGCAG
CAGTCCGTAAGTATGGTAGACAGATATCTTAATGCGGTCAAGCGTGCCTT
GGGTGTGTTACGTGAGAAACGGCTGCAGCAATTGTGGCTAGTGTGTTCTT
CGCCTGTGTATGCCGACAGGGTAGTGCAGGGATTAATGCAGTATCGACGG
CGTGTGCGGAAGCTGGACAAGGCAAGACGGGAGACGGAGGGACGGAGGGA
GGAAGCGGCGGAGGCGTTGGCCAAGGCGTTGCCGGAATATGAGGCGATGG
CGGCGGCGACGACTGCCTTGAAGAAAAGGGTGGAAGAGTCGTTAAAGGAG
TTGTTTAAGGGTAGGGATATTTTGATCACCGGGGGCGTAAATGCACTGTG
A

Coding sequence (CDS) from alignment at scaffold_9:750697..752697+

>mRNA_4840 ID=mRNA_4840|Name=jgi.p|Nanoce1779_2|630050|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_9:750697..752697+ (Nannochloropsis oceanica)
ATGGCGCCAGCAACCTCGTCATTGTCGTCGAATGACCCGAACAAAGTCCC
TATCTACGTGCCTTATCAAAAATTGACTGGTAAGAGGGACCTCGATTGGC
TCGTGAACAGAAAGCAGCTCCCGGCCAACTGGCATGAGTCGCTTAAGCTT
GTGAAAGAGGATTTACGAGCAGCCCTACGTGGGTTGGAGGAGGGTGGGGG
AGAAGTTGCGGTGTGGGTCAAAGGGAAGGAGAGTAGCGCCGTCACGTACT
ACACTTGTCAGCAAATCATGTCTCTGCTGGAAAGGACACAGCAAGGCCGC
ACGAAGAATATCTTCGGGTCATACACCGTGGCGGTGCTCAAGACGTGGGA
TAGCATTTTGCGCGCGTATCGCAAGGACAACCTTTTTTTAGGGGAAGCTG
CGCAGTTACTGGCGACACATACCACCTACACTTGTCCCGCAGTGCGTCGT
CGAATTGCGGGGTATGATAAGCAGATCGAGGACTGCGATCGACGAATGGG
AGAATATAGAAAAGCAATGACGGAGGGAAAAGTCCGCTTTCACATGGCGT
GTGGAGAGTGGAGTTTGAGCCCTGGGGAGGATGTTTGGGGGGAGGGCAAG
GAGGAGGTGGGGGAAGCGGATGAAAAGGAGGGAAAAGAGTGGAGGAGGTC
CTTGGTCGAGATGGCTCAGCAGGAATTACCGAGTATGATGGAGGAGGTAG
AGAAATTGTTGTGTGCGGAGGAAGTGGCGGAGGCCTTACTGTACTATCAG
CAGGTGTGGTGCTTCCTTCATTCGTACGAGCGGAAGGAGGATGGGAGGGA
GGAAGAGGATACAGAAATTACGACGGAGTTCTTTCCTGTGCTCTCCAAGG
TGCGACGAGGGGAGAAGCTGTTAGCGGTAGAGGGAGTGGAGGAGGAGGAG
GAGGAGGAGGAAGGGCAGGGGGTGATGGAGATTAATTGGGGTGCTGGTGC
GCCTTCATCGGATGAGGTTGTGCCCGAGGGAGAAGGGGGAGGGATTGATT
GGAATGAAGGAGGCGGAGGAGGACCGGAGAACGGCAGCAGCTTCGAGCCT
GTCGATAACGAAAGAGCAGTGAACTTCACATCGACCAGCAGCAGCAGCAG
TACTGACGCGAGCCCCCCATCCGCGACCGTGGCATCACCCAAAACGGGTC
TGGAGGGGCAGCAGGGGGGATCCCTCCTTGCGGACGCCAGTCTTCGGGCC
GGGCTTGTGAACGATATGATGGAATTGGAGTCCTTCTTACAGCAGCGGCG
TCTGGAGGTTGGAGACACGAGCAATGTCGTTTTTGTGGGGCAGTTTCAGG
GGTCGCATGCCGCGTTGCAGCAGCAGTCCGTAAGTATGGTAGACAGATAT
CTTAATGCGGTCAAGCGTGCCTTGGGTGTGTTACGTGAGAAACGGCTGCA
GCAATTGTGGCTAGTGTGTTCTTCGCCTGTGTATGCCGACAGGGTAGTGC
AGGGATTAATGCAGTATCGACGGCGTGTGCGGAAGCTGGACAAGGCAAGA
CGGGAGACGGAGGGACGGAGGGAGGAAGCGGCGGAGGCGTTGGCCAAGGC
GTTGCCGGAATATGAGGCGATGGCGGCGGCGACGACTGCCTTGAAGAAAA
GGGTGGAAGAGTCGTTAAAGGAGTTGTTTAAGGGTAGGGATATTTTGATC
ACCGGGGGCGTAAATGCACTGTGAATGGCGCCAGCAACCTCGTCATTGTC
GTCGAATGACCCGAACAAAGTCCCTATCTACGTGCCTTATCAAAAATTGA
CTGGTAAGAGGGACCTCGATTGGCTCGTGAACAGAAAGCAGCTCCCGGCC
AACTGGCATGAGTCGCTTAAGCTTGTGAAAGAGGATTTACGAGCAGCCCT
ACGTGGGTTGGAGGAGGGTGGGGGAGAAGTTGCGGTGTGGGTCAAAGGGA
AGGAGAGTAGCGCCGTCACGTACTACACTTGTCAGCAAATCATGTCTCTG
CTGGAAAGGACACAGCAAGGCCGCACGAAGAATATCTTCGGGTCATACAC
CGTGGCGGTGCTCAAGACGTGGGATAGCATTTTGCGCGCGTATCGCAAGG
ACAACCTTTTTTTAGGGGAAGCTGCGCAGTTACTGGCGACACATACCACC
TACACTTGTCCCGCAGTGCGTCGTCGAATTGCGGGGTATGATAAGCAGAT
CGAGGACTGCGATCGACGAATGGGAGAATATAGAAAAGCAATGACGGAGG
GAAAAGTCCGCTTTCACATGGCGTGTGGAGAGTGGAGTTTGAGCCCTGGG
GAGGATGTTTGGGGGGAGGGCAAGGAGGAGGTGGGGGAAGCGGATGAAAA
GGAGGGAAAAGAGTGGAGGAGGTCCTTGGTCGAGATGGCTCAGCAGGAAT
TACCGAGTATGATGGAGGAGGTAGAGAAATTGTTGTGTGCGGAGGAAGTG
GCGGAGGCCTTACTGTACTATCAGCAGGTGTGGTGCTTCCTTCATTCGTA
CGAGCGGAAGGAGGATGGGAGGGAGGAAGAGGATACAGAAATTACGACGG
AGTTCTTTCCTGTGCTCTCCAAGGTGCGACGAGGGGAGAAGCTGTTAGCG
GTAGAGGGAGTGGAGGAGGAGGAGGAGGAGGAGGAAGGGCAGGGGGTGAT
GGAGATTAATTGGGGTGCTGGTGCGCCTTCATCGGATGAGGTTGTGCCCG
AGGGAGAAGGGGGAGGGATTGATTGGAATGAAGGAGGCGGAGGAGGACCG
GAGAACGGCAGCAGCTTCGAGCCTGTCGATAACGAAAGAGCAGTGAACTT
CACATCGACCAGCAGCAGCAGCAGTACTGACGCGAGCCCCCCATCCGCGA
CCGTGGCATCACCCAAAACGGGTCTGGAGGGGCAGCAGGGGGGATCCCTC
CTTGCGGACGCCAGTCTTCGGGCCGGGCTTGTGAACGATATGATGGAATT
GGAGTCCTTCTTACAGCAGCGGCGTCTGGAGGTTGGAGACACGAGCAATG
TCGTTTTTGTGGGGCAGTTTCAGGGGTCGCATGCCGCGTTGCAGCAGCAG
TCCGTAAGTATGGTAGACAGATATCTTAATGCGGTCAAGCGTGCCTTGGG
TGTGTTACGTGAGAAACGGCTGCAGCAATTGTGGCTAGTGTGTTCTTCGC
CTGTGTATGCCGACAGGGTAGTGCAGGGATTAATGCAGTATCGACGGCGT
GTGCGGAAGCTGGACAAGGCAAGACGGGAGACGGAGGGACGGAGGGAGGA
AGCGGCGGAGGCGTTGGCCAAGGCGTTGCCGGAATATGAGGCGATGGCGG
CGGCGACGACTGCCTTGAAGAAAAGGGTGGAAGAGTCGTTAAAGGAGTTG
TTTAAGGGTAGGGATATTTTGATCACCGGGGGCGTAAATGCACTGTGA

Synonyms

Publications