jgi.p|Nanoce1779_2|524039, mRNA_484 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524039
Unique Name	mRNA_484
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1524
Alignment location	scaffold_3:1173592..1175261 -

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Properties


Property Name	Value
TranscriptId	524125
Track	FilteredModels2
ProteinId	524039

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1173592..1175261 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524039	gene_484	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524039	mRNA_484-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_484	CDS_484	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1173592..1175261-
coding sequence from alignment at scaffold_3:1173592..1175261-

mRNA sequence

>mRNA_484 ID=mRNA_484|Name=jgi.p|Nanoce1779_2|524039|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
ATGCTTTCCTATCCCAATCTCCTCCTTTCTCGCCTTGCTACGACACAGAA
ACACGCCTCCCGCCTTCCAAAACTGCGCGCCCGCCGCTCCCTCCTGAGCG
CCTCCTCCTCTGCCAGTAGCGACAGTCCCACGCATTTCGACTACCTTGTC
ATTGGCGGAGGCAGTGGTGGCATCGCTTCGGCCCGTCGTGCTGCGTCTTA
CGGCGCAAAAGTCGGTGTGATTGAAAAGCAATACTTGGGTGGCACCTGTG
TCAACGTAGGGTGTGTGCCCAAGAAAGTCATGTGGAACGCGGCGCATGTC
AGGGAAATACTGGCAGGGGCCAAACACTTTGGGTTTGATTTGGACGGGCA
TGGTGTACCGTTCGATTGGCCGATGCTGAAGAAGGCCCGCGATGACTACG
TCCAACGTCTCAACGGCATCTACGCCAAGAATCTGGGCGCGTCGGAGGTG
GCGATCATTGAGGGCACTGCCTCATTCGCCGGTCCCAAGACCCTCCGTGT
GGGGAGCACTGACTACACCGCCGAGCATATCCTCATCGCAGTGGGAGGAC
AGCCCAGGATGCTATCTATTCCGGGGGCGAAGGAATTTGCGATTACCAGT
GACGGTTTTTTTGATTTGCCTGAGATGCCGAAGAGAGTGGGAGTGGTAGG
GGGCGGATACATCGCAGTAGAGCTGGCGGGAGTATTGAGTGAATTGGGCA
GTGAGACGACGTTGATTTGTAGGGGGGAGTCGGTCTTGAGGGGCTTTGAT
AACTTGATCACCTCGACGCTGATGGAGGAGATGCAAAAGGCGGGATTGAA
GTTCAGGGGCATGTCGACGCCCAAGGCGGTGGTAAAGGAAGAGGGAGGGT
TGATGGTGGAGTTGGAGGAGGGAGGGAGGGAGGGTCCGTTTGATACGCTG
TTGTTGGCGACAGGGAGATCCACGGCCATTACGAATTTGGGTTTGGAGGG
GGCGGGGATTGAGACGGATAAGGCCGGCTACGTGCAGGTGGATGAGTATC
AGAACACGAATGTGGGGGGTGTGTACGCGTTGGGGGACGTGTGTGGAAGA
GTGCAGCTGACGCCAATGGCGATTGCGGCGGGGAGACGGTTGGCGGATCG
ATTGTTTGGCTCGATCCCAGATGCGAAGGCGGATTATGATGGTGTCCCGA
CCGTGGTGTTCTCGCACCCGCCCATTGGTACGGTGGGATTGACGGAGCAG
CAGGCGAAGGAGGAGCATGGAGAGGACAATGTGAAGATCTATAGCAGCAA
GTTTGTGAATTTGTTTTACGGTCCCTGGCGACTTGCACCTGAGGAGAAGC
CCAAGACGGCGATGAAGCTTGTGTGCGTAGGACCGGAAGAGAAGGTGGTG
GGCCTGCACGTGATAGGGATGGGGGCGGACGAGATGCTGCAGGGTTTTGC
GGTCGCGATGAAGATGGGAGCCACCAAGGCCGACTTTGACGCGTGTGTGG
CGTTGCACCCGACGGCGGCGGAAGAGTTTGTGACATTGGCGCCGTGGGGG
TTGAAAGGGAAGAGGAGCAGGTGA

protein sequence of jgi.p|Nanoce1779_2|524039

>mRNA_484-protein ID=mRNA_484-protein|Name=jgi.p|Nanoce1779_2|524039|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MLSYPNLLLSRLATTQKHASRLPKLRARRSLLSASSSASSDSPTHFDYLV
IGGGSGGIASARRAASYGAKVGVIEKQYLGGTCVNVGCVPKKVMWNAAHV
REILAGAKHFGFDLDGHGVPFDWPMLKKARDDYVQRLNGIYAKNLGASEV
AIIEGTASFAGPKTLRVGSTDYTAEHILIAVGGQPRMLSIPGAKEFAITS
DGFFDLPEMPKRVGVVGGGYIAVELAGVLSELGSETTLICRGESVLRGFD
NLITSTLMEEMQKAGLKFRGMSTPKAVVKEEGGLMVELEEGGREGPFDTL
LLATGRSTAITNLGLEGAGIETDKAGYVQVDEYQNTNVGGVYALGDVCGR
VQLTPMAIAAGRRLADRLFGSIPDAKADYDGVPTVVFSHPPIGTVGLTEQ
QAKEEHGEDNVKIYSSKFVNLFYGPWRLAPEEKPKTAMKLVCVGPEEKVV
GLHVIGMGADEMLQGFAVAMKMGATKADFDACVALHPTAAEEFVTLAPWG
LKGKRSR*

mRNA from alignment at scaffold_3:1173592..1175261-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_484 ID=mRNA_484|Name=jgi.p|Nanoce1779_2|524039|organism=Nannochloropsis oceanica|type=mRNA|length=1670bp|location=Sequence derived from alignment at scaffold_3:1173592..1175261- (Nannochloropsis oceanica)
ATGCTTTCCTATCCCAATCTCCTCCTTTCTCGCCTTGCTACGACACAGAA
ACACGCCTCCCGCCTTCCAAAACTGCGCGCCCGCCGCTCCCTCCTGAGCG
CCTCCTCCTCTGCCAGTAGCGACAGTCCCACGCATTTCGACTACCTTGTC
ATTGGCGGAGGCAGTGGTGGCATCGCTTCGGCCCGTCGTGCTGCGTCTTA
CGGCGCAAAAGTCGGTGTGATTGAAAAGCAATACTTGGGTGGCACCTGTG
TCAACGTAGGGTGTGTGCCCAAGAAAGTCATGTGGAACGCGGCGCATGTC
AGGGAAATACTGGCAGGGGCCAAACACTTTGGGTTTGATTTGGACGGGCA
TGGTGTACCGTTCGATTGGCCGATGCTGAAGAAGGTAAGGGAGGAGGAAG
GGAGAGGAGGGAGGGAGGGCGGGCGGGAGGACGGGCGGGAGGAAGGAAGG
TAGGCGATGGTCAGGATTAGCAGTAGGTTCATTCATTGATCTCTCCCTCC
CTTCCTCTCTCTCTTCCTCTCTTCACACAGGCCCGCGATGACTACGTCCA
ACGTCTCAACGGCATCTACGCCAAGAATCTGGGCGCGTCGGAGGTGGCGA
TCATTGAGGGCACTGCCTCATTCGCCGGTCCCAAGACCCTCCGTGTGGGG
AGCACTGACTACACCGCCGAGCATATCCTCATCGCAGTGGGAGGACAGCC
CAGGATGCTATCTATTCCGGGGGCGAAGGAATTTGCGATTACCAGTGACG
GTTTTTTTGATTTGCCTGAGATGCCGAAGAGAGTGGGAGTGGTAGGGGGC
GGATACATCGCAGTAGAGCTGGCGGGAGTATTGAGTGAATTGGGCAGTGA
GACGACGTTGATTTGTAGGGGGGAGTCGGTCTTGAGGGGCTTTGATAACT
TGATCACCTCGACGCTGATGGAGGAGATGCAAAAGGCGGGATTGAAGTTC
AGGGGCATGTCGACGCCCAAGGCGGTGGTAAAGGAAGAGGGAGGGTTGAT
GGTGGAGTTGGAGGAGGGAGGGAGGGAGGGTCCGTTTGATACGCTGTTGT
TGGCGACAGGGAGATCCACGGCCATTACGAATTTGGGTTTGGAGGGGGCG
GGGATTGAGACGGATAAGGCCGGCTACGTGCAGGTGGATGAGTATCAGAA
CACGAATGTGGGGGGTGTGTACGCGTTGGGGGACGTGTGTGGAAGAGTGC
AGCTGACGCCAATGGCGATTGCGGCGGGGAGACGGTTGGCGGATCGATTG
TTTGGCTCGATCCCAGATGCGAAGGCGGATTATGATGGTGTCCCGACCGT
GGTGTTCTCGCACCCGCCCATTGGTACGGTGGGATTGACGGAGCAGCAGG
CGAAGGAGGAGCATGGAGAGGACAATGTGAAGATCTATAGCAGCAAGTTT
GTGAATTTGTTTTACGGTCCCTGGCGACTTGCACCTGAGGAGAAGCCCAA
GACGGCGATGAAGCTTGTGTGCGTAGGACCGGAAGAGAAGGTGGTGGGCC
TGCACGTGATAGGGATGGGGGCGGACGAGATGCTGCAGGGTTTTGCGGTC
GCGATGAAGATGGGAGCCACCAAGGCCGACTTTGACGCGTGTGTGGCGTT
GCACCCGACGGCGGCGGAAGAGTTTGTGACATTGGCGCCGTGGGGGTTGA
AAGGGAAGAGGAGCAGGTGA

Coding sequence (CDS) from alignment at scaffold_3:1173592..1175261-

>mRNA_484 ID=mRNA_484|Name=jgi.p|Nanoce1779_2|524039|organism=Nannochloropsis oceanica|type=CDS|length=3048bp|location=Sequence derived from alignment at scaffold_3:1173592..1175261- (Nannochloropsis oceanica)
GCCCGCGATGACTACGTCCAACGTCTCAACGGCATCTACGCCAAGAATCT
GGGCGCGTCGGAGGTGGCGATCATTGAGGGCACTGCCTCATTCGCCGGTC
CCAAGACCCTCCGTGTGGGGAGCACTGACTACACCGCCGAGCATATCCTC
ATCGCAGTGGGAGGACAGCCCAGGATGCTATCTATTCCGGGGGCGAAGGA
ATTTGCGATTACCAGTGACGGTTTTTTTGATTTGCCTGAGATGCCGAAGA
GAGTGGGAGTGGTAGGGGGCGGATACATCGCAGTAGAGCTGGCGGGAGTA
TTGAGTGAATTGGGCAGTGAGACGACGTTGATTTGTAGGGGGGAGTCGGT
CTTGAGGGGCTTTGATAACTTGATCACCTCGACGCTGATGGAGGAGATGC
AAAAGGCGGGATTGAAGTTCAGGGGCATGTCGACGCCCAAGGCGGTGGTA
AAGGAAGAGGGAGGGTTGATGGTGGAGTTGGAGGAGGGAGGGAGGGAGGG
TCCGTTTGATACGCTGTTGTTGGCGACAGGGAGATCCACGGCCATTACGA
ATTTGGGTTTGGAGGGGGCGGGGATTGAGACGGATAAGGCCGGCTACGTG
CAGGTGGATGAGTATCAGAACACGAATGTGGGGGGTGTGTACGCGTTGGG
GGACGTGTGTGGAAGAGTGCAGCTGACGCCAATGGCGATTGCGGCGGGGA
GACGGTTGGCGGATCGATTGTTTGGCTCGATCCCAGATGCGAAGGCGGAT
TATGATGGTGTCCCGACCGTGGTGTTCTCGCACCCGCCCATTGGTACGGT
GGGATTGACGGAGCAGCAGGCGAAGGAGGAGCATGGAGAGGACAATGTGA
AGATCTATAGCAGCAAGTTTGTGAATTTGTTTTACGGTCCCTGGCGACTT
GCACCTGAGGAGAAGCCCAAGACGGCGATGAAGCTTGTGTGCGTAGGACC
GGAAGAGAAGGTGGTGGGCCTGCACGTGATAGGGATGGGGGCGGACGAGA
TGCTGCAGGGTTTTGCGGTCGCGATGAAGATGGGAGCCACCAAGGCCGAC
TTTGACGCGTGTGTGGCGTTGCACCCGACGGCGGCGGAAGAGTTTGTGAC
ATTGGCGCCGTGGGGGTTGAAAGGGAAGAGGAGCAGGTGAATGCTTTCCT
ATCCCAATCTCCTCCTTTCTCGCCTTGCTACGACACAGAAACACGCCTCC
CGCCTTCCAAAACTGCGCGCCCGCCGCTCCCTCCTGAGCGCCTCCTCCTC
TGCCAGTAGCGACAGTCCCACGCATTTCGACTACCTTGTCATTGGCGGAG
GCAGTGGTGGCATCGCTTCGGCCCGTCGTGCTGCGTCTTACGGCGCAAAA
GTCGGTGTGATTGAAAAGCAATACTTGGGTGGCACCTGTGTCAACGTAGG
GTGTGTGCCCAAGAAAGTCATGTGGAACGCGGCGCATGTCAGGGAAATAC
TGGCAGGGGCCAAACACTTTGGGTTTGATTTGGACGGGCATGGTGTACCG
TTCGATTGGCCGATGCTGAAGAAGGCCCGCGATGACTACGTCCAACGTCT
CAACGGCATCTACGCCAAGAATCTGGGCGCGTCGGAGGTGGCGATCATTG
AGGGCACTGCCTCATTCGCCGGTCCCAAGACCCTCCGTGTGGGGAGCACT
GACTACACCGCCGAGCATATCCTCATCGCAGTGGGAGGACAGCCCAGGAT
GCTATCTATTCCGGGGGCGAAGGAATTTGCGATTACCAGTGACGGTTTTT
TTGATTTGCCTGAGATGCCGAAGAGAGTGGGAGTGGTAGGGGGCGGATAC
ATCGCAGTAGAGCTGGCGGGAGTATTGAGTGAATTGGGCAGTGAGACGAC
GTTGATTTGTAGGGGGGAGTCGGTCTTGAGGGGCTTTGATAACTTGATCA
CCTCGACGCTGATGGAGGAGATGCAAAAGGCGGGATTGAAGTTCAGGGGC
ATGTCGACGCCCAAGGCGGTGGTAAAGGAAGAGGGAGGGTTGATGGTGGA
GTTGGAGGAGGGAGGGAGGGAGGGTCCGTTTGATACGCTGTTGTTGGCGA
CAGGGAGATCCACGGCCATTACGAATTTGGGTTTGGAGGGGGCGGGGATT
GAGACGGATAAGGCCGGCTACGTGCAGGTGGATGAGTATCAGAACACGAA
TGTGGGGGGTGTGTACGCGTTGGGGGACGTGTGTGGAAGAGTGCAGCTGA
CGCCAATGGCGATTGCGGCGGGGAGACGGTTGGCGGATCGATTGTTTGGC
TCGATCCCAGATGCGAAGGCGGATTATGATGGTGTCCCGACCGTGGTGTT
CTCGCACCCGCCCATTGGTACGGTGGGATTGACGGAGCAGCAGGCGAAGG
AGGAGCATGGAGAGGACAATGTGAAGATCTATAGCAGCAAGTTTGTGAAT
TTGTTTTACGGTCCCTGGCGACTTGCACCTGAGGAGAAGCCCAAGACGGC
GATGAAGCTTGTGTGCGTAGGACCGGAAGAGAAGGTGGTGGGCCTGCACG
TGATAGGGATGGGGGCGGACGAGATGCTGCAGGGTTTTGCGGTCGCGATG
AAGATGGGAGCCACCAAGGCCGACTTTGACGCGTGTGTGGCGTTGCACCC
GACGGCGGCGGAAGAGTTTGTGACATTGGCGCCGTGGGGGTTGAAAGGGA
AGAGGAGCAGGTGAATGCTTTCCTATCCCAATCTCCTCCTTTCTCGCCTT
GCTACGACACAGAAACACGCCTCCCGCCTTCCAAAACTGCGCGCCCGCCG
CTCCCTCCTGAGCGCCTCCTCCTCTGCCAGTAGCGACAGTCCCACGCATT
TCGACTACCTTGTCATTGGCGGAGGCAGTGGTGGCATCGCTTCGGCCCGT
CGTGCTGCGTCTTACGGCGCAAAAGTCGGTGTGATTGAAAAGCAATACTT
GGGTGGCACCTGTGTCAACGTAGGGTGTGTGCCCAAGAAAGTCATGTGGA
ACGCGGCGCATGTCAGGGAAATACTGGCAGGGGCCAAACACTTTGGGTTT
GATTTGGACGGGCATGGTGTACCGTTCGATTGGCCGATGCTGAAGAAG

Synonyms

Publications