jgi.p|Nanoce1779_2|588057, mRNA_4837 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588057
Unique Name	mRNA_4837
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2096
Alignment location	scaffold_9:739892..741987 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588143
Track	FilteredModels2
ProteinId	588057

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:739892..741987 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588057	gene_4837	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588057	mRNA_4837-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4837	CDS_4837	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:739892..741987+
coding sequence from alignment at scaffold_9:739892..741987+

mRNA sequence

>mRNA_4837 ID=mRNA_4837|Name=jgi.p|Nanoce1779_2|588057|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp
ACAGAAGAAGGCCTGATATGGGCTTCTCTTGTGGCTTACCGCTTCTCTTG
TCCCTCATCCTTGCCCTCGCCTGCCCCACCGTCAGCCTTATCCTCTCTCC
AGTCAATGCCGCCACCGGACCCGACGTTGCCCTCATCATTTTACACGGCG
CAAACGTTGCACCTGAAGCCTACGTACCCCTCTGTCACATCCTCCAAGCC
AAGCTTCAAGCAGATGTGCGTCTCTGGGTTGGGCTACCGGACGTAGATTT
GAACGTGCCCATATATTTGGACAACGCAATGCAAAGCCTTCAAGTCAATC
TCACGGCGCGCGGGATGCCTGCCAACGTCCCCAAAATCCTGGCAGGCCAT
TCCTTGGGCGGTATTCGGTCCCAGTATTACGCAAATGACCACGCAGAAGA
CTTTATAGGACAGACACTTATGGCTTCAGCCTTGCTCCGAGAGTTCGATA
ATGTCACCTACCTCGTTCCCACACTCACCATCGGCGGGGAGAAGGATGGC
AACATGCGAGTCTCCCGCCTGGCCCAGTCCTCGCACATCTATAGGATGCA
GTCTGACAAAGTAGATGACTTCCCTGTCGTGGTCGTGCCTGGGGCAAACC
ATATGTCATACTGCGTGGGGAAGCCGCCCTTGCCGGTGGCAGCTGTGGAT
CTGACGGCGGAGATCTCGAAGGAGGAGGGCCACCAAACGATTGCTCAAGT
CATGGCAGCTTTCATTCGAATGCGTCTGCGGGCCACGAACAAACTTCTCC
CGGCTGCTAATGATAATGGAAACTGTCACAGCAGCACCAGTAGCAGATGC
AGCAGCACCACCAGCAGCAGTACAGACGAAGAGATAATGCAGGCTGCTCT
CGAGGCGACCGCCAAGGTCGTCGATCCTCTCGTAAAAGCAATGCTTTTGG
AAGGCTCCTGGCACTTTCAGCCCCCATGCAACTCGGACCGGCCCAGTCCC
CACTGTCCATTCTATCCTGTCTGGCCTCCACAGCCCTGGGATCGAGAGCC
AAGCAACGAGACAAATTGCGTGTGTGGGTGTGAGTGGGTGGAGCAAGTCG
CCCAAGCGCATATTGGAGGCCTGGAAGAGTACGATGTCACTTATGTTGTG
AGAGACAGCTTTCATGATGTCCGGGACACGGAGCCGTATCACCATGCCCA
TCTGTGGAATGAATGTACCGACGCAACATTGCAGAATGGAGATTGCATCT
TGAATATAACGACTGTGAGCGAACTGGTTTTTAGCCCCTTGGACGCGTTT
GACGCGGGCTTCCCCCCAGTCACCGCGTCGGAGATCCGGGCCAAAATGAA
GAGCAGGCAAGCGATTTATCAGCAGACGATTGACCCGACTGCCAAGCTGG
CCGACACTGACAATCCTGATTTTTGTAAAGAGATTAATGTGAGAGCGTTT
GCATGGGCGTATGCACAGGCCCCGCCGCGGACGAGGGAGAGGTTTCGGGC
CGTTGGGGTGCAGCCTGTGTTTGATGCTGACATTCGACATCGTGTACAGA
TTGGTCCTCTGTGGATCAATAGTCCGTTGAGGTTGCAAGAACGATACGAT
AAAGGTTCAGGAAAGTATGTTTGGCATGTGCGAGCGCCCGCCCTGGTGAC
TGATGTGAGTGCGCATATCTATCCGGATTCGGCTGGGTATCATTATTGCA
AGTTACTCTCGCCGGCGAGGGCACTTGAATGGATGTATGTAGACGGGCTG
AGGAGGTATGATCGACAGAGTGGAGCACTGGAGGAGGAGGAGGGGAAAGA
GGAGAATCAGGTGGAGGAAGAGGAGGAGGGAGCAGCGGTCTCTGTTGATG
AGATGGTCCATTGGAGGGATAGAGAGGCGGCTACCACGCGCCAGGCGTCC
TTGCGGGCGATGGAATAAGCTGGGAAAGTGTATTGTTGTATTGTTGTTGT
TAAAAAAGTTTGAAAAAAGAGTGAATGCGAAATGGGAAAGAAAAAGCGAT
CCGACTTATTGGCTTGCGGTCGTCGTCGCAGTCGTGGCCGTGCTTAGACC
CTTAGTCATCTCTCTATCACCGTTACTATCATTGAGGTCATACGGCGAGA
CGTCCAAAAGCAAACCATCATACACACGCAAACGCGCGCACATAAT

protein sequence of jgi.p|Nanoce1779_2|588057

>mRNA_4837-protein ID=mRNA_4837-protein|Name=jgi.p|Nanoce1779_2|588057|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MGFSCGLPLLLSLILALACPTVSLILSPVNAATGPDVALIILHGANVAPE
AYVPLCHILQAKLQADVRLWVGLPDVDLNVPIYLDNAMQSLQVNLTARGM
PANVPKILAGHSLGGIRSQYYANDHAEDFIGQTLMASALLREFDNVTYLV
PTLTIGGEKDGNMRVSRLAQSSHIYRMQSDKVDDFPVVVVPGANHMSYCV
GKPPLPVAAVDLTAEISKEEGHQTIAQVMAAFIRMRLRATNKLLPAANDN
GNCHSSTSSRCSSTTSSSTDEEIMQAALEATAKVVDPLVKAMLLEGSWHF
QPPCNSDRPSPHCPFYPVWPPQPWDREPSNETNCVCGCEWVEQVAQAHIG
GLEEYDVTYVVRDSFHDVRDTEPYHHAHLWNECTDATLQNGDCILNITTV
SELVFSPLDAFDAGFPPVTASEIRAKMKSRQAIYQQTIDPTAKLADTDNP
DFCKEINVRAFAWAYAQAPPRTRERFRAVGVQPVFDADIRHRVQIGPLWI
NSPLRLQERYDKGSGKYVWHVRAPALVTDVSAHIYPDSAGYHYCKLLSPA
RALEWMYVDGLRRYDRQSGALEEEEGKEENQVEEEEEGAAVSVDEMVHWR
DREAATTRQASLRAME*

mRNA from alignment at scaffold_9:739892..741987+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4837 ID=mRNA_4837|Name=jgi.p|Nanoce1779_2|588057|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp|location=Sequence derived from alignment at scaffold_9:739892..741987+ (Nannochloropsis oceanica)
ACAGAAGAAGGCCTGATATGGGCTTCTCTTGTGGCTTACCGCTTCTCTTG
TCCCTCATCCTTGCCCTCGCCTGCCCCACCGTCAGCCTTATCCTCTCTCC
AGTCAATGCCGCCACCGGACCCGACGTTGCCCTCATCATTTTACACGGCG
CAAACGTTGCACCTGAAGCCTACGTACCCCTCTGTCACATCCTCCAAGCC
AAGCTTCAAGCAGATGTGCGTCTCTGGGTTGGGCTACCGGACGTAGATTT
GAACGTGCCCATATATTTGGACAACGCAATGCAAAGCCTTCAAGTCAATC
TCACGGCGCGCGGGATGCCTGCCAACGTCCCCAAAATCCTGGCAGGCCAT
TCCTTGGGCGGTATTCGGTCCCAGTATTACGCAAATGACCACGCAGAAGA
CTTTATAGGACAGACACTTATGGCTTCAGCCTTGCTCCGAGAGTTCGATA
ATGTCACCTACCTCGTTCCCACACTCACCATCGGCGGGGAGAAGGATGGC
AACATGCGAGTCTCCCGCCTGGCCCAGTCCTCGCACATCTATAGGATGCA
GTCTGACAAAGTAGATGACTTCCCTGTCGTGGTCGTGCCTGGGGCAAACC
ATATGTCATACTGCGTGGGGAAGCCGCCCTTGCCGGTGGCAGCTGTGGAT
CTGACGGCGGAGATCTCGAAGGAGGAGGGCCACCAAACGATTGCTCAAGT
CATGGCAGCTTTCATTCGAATGCGTCTGCGGGCCACGAACAAACTTCTCC
CGGCTGCTAATGATAATGGAAACTGTCACAGCAGCACCAGTAGCAGATGC
AGCAGCACCACCAGCAGCAGTACAGACGAAGAGATAATGCAGGCTGCTCT
CGAGGCGACCGCCAAGGTCGTCGATCCTCTCGTAAAAGCAATGCTTTTGG
AAGGCTCCTGGCACTTTCAGCCCCCATGCAACTCGGACCGGCCCAGTCCC
CACTGTCCATTCTATCCTGTCTGGCCTCCACAGCCCTGGGATCGAGAGCC
AAGCAACGAGACAAATTGCGTGTGTGGGTGTGAGTGGGTGGAGCAAGTCG
CCCAAGCGCATATTGGAGGCCTGGAAGAGTACGATGTCACTTATGTTGTG
AGAGACAGCTTTCATGATGTCCGGGACACGGAGCCGTATCACCATGCCCA
TCTGTGGAATGAATGTACCGACGCAACATTGCAGAATGGAGATTGCATCT
TGAATATAACGACTGTGAGCGAACTGGTTTTTAGCCCCTTGGACGCGTTT
GACGCGGGCTTCCCCCCAGTCACCGCGTCGGAGATCCGGGCCAAAATGAA
GAGCAGGCAAGCGATTTATCAGCAGACGATTGACCCGACTGCCAAGCTGG
CCGACACTGACAATCCTGATTTTTGTAAAGAGATTAATGTGAGAGCGTTT
GCATGGGCGTATGCACAGGCCCCGCCGCGGACGAGGGAGAGGTTTCGGGC
CGTTGGGGTGCAGCCTGTGTTTGATGCTGACATTCGACATCGTGTACAGA
TTGGTCCTCTGTGGATCAATAGTCCGTTGAGGTTGCAAGAACGATACGAT
AAAGGTTCAGGAAAGTATGTTTGGCATGTGCGAGCGCCCGCCCTGGTGAC
TGATGTGAGTGCGCATATCTATCCGGATTCGGCTGGGTATCATTATTGCA
AGTTACTCTCGCCGGCGAGGGCACTTGAATGGATGTATGTAGACGGGCTG
AGGAGGTATGATCGACAGAGTGGAGCACTGGAGGAGGAGGAGGGGAAAGA
GGAGAATCAGGTGGAGGAAGAGGAGGAGGGAGCAGCGGTCTCTGTTGATG
AGATGGTCCATTGGAGGGATAGAGAGGCGGCTACCACGCGCCAGGCGTCC
TTGCGGGCGATGGAATAAGCTGGGAAAGTGTATTGTTGTATTGTTGTTGT
TAAAAAAGTTTGAAAAAAGAGTGAATGCGAAATGGGAAAGAAAAAGCGAT
CCGACTTATTGGCTTGCGGTCGTCGTCGCAGTCGTGGCCGTGCTTAGACC
CTTAGTCATCTCTCTATCACCGTTACTATCATTGAGGTCATACGGCGAGA
CGTCCAAAAGCAAACCATCATACACACGCAAACGCGCGCACATAAT

Coding sequence (CDS) from alignment at scaffold_9:739892..741987+

>mRNA_4837 ID=mRNA_4837|Name=jgi.p|Nanoce1779_2|588057|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at scaffold_9:739892..741987+ (Nannochloropsis oceanica)
ATGGGCTTCTCTTGTGGCTTACCGCTTCTCTTGTCCCTCATCCTTGCCCT
CGCCTGCCCCACCGTCAGCCTTATCCTCTCTCCAGTCAATGCCGCCACCG
GACCCGACGTTGCCCTCATCATTTTACACGGCGCAAACGTTGCACCTGAA
GCCTACGTACCCCTCTGTCACATCCTCCAAGCCAAGCTTCAAGCAGATGT
GCGTCTCTGGGTTGGGCTACCGGACGTAGATTTGAACGTGCCCATATATT
TGGACAACGCAATGCAAAGCCTTCAAGTCAATCTCACGGCGCGCGGGATG
CCTGCCAACGTCCCCAAAATCCTGGCAGGCCATTCCTTGGGCGGTATTCG
GTCCCAGTATTACGCAAATGACCACGCAGAAGACTTTATAGGACAGACAC
TTATGGCTTCAGCCTTGCTCCGAGAGTTCGATAATGTCACCTACCTCGTT
CCCACACTCACCATCGGCGGGGAGAAGGATGGCAACATGCGAGTCTCCCG
CCTGGCCCAGTCCTCGCACATCTATAGGATGCAGTCTGACAAAGTAGATG
ACTTCCCTGTCGTGGTCGTGCCTGGGGCAAACCATATGTCATACTGCGTG
GGGAAGCCGCCCTTGCCGGTGGCAGCTGTGGATCTGACGGCGGAGATCTC
GAAGGAGGAGGGCCACCAAACGATTGCTCAAGTCATGGCAGCTTTCATTC
GAATGCGTCTGCGGGCCACGAACAAACTTCTCCCGGCTGCTAATGATAAT
GGAAACTGTCACAGCAGCACCAGTAGCAGATGCAGCAGCACCACCAGCAG
CAGTACAGACGAAGAGATAATGCAGGCTGCTCTCGAGGCGACCGCCAAGG
TCGTCGATCCTCTCGTAAAAGCAATGCTTTTGGAAGGCTCCTGGCACTTT
CAGCCCCCATGCAACTCGGACCGGCCCAGTCCCCACTGTCCATTCTATCC
TGTCTGGCCTCCACAGCCCTGGGATCGAGAGCCAAGCAACGAGACAAATT
GCGTGTGTGGGTGTGAGTGGGTGGAGCAAGTCGCCCAAGCGCATATTGGA
GGCCTGGAAGAGTACGATGTCACTTATGTTGTGAGAGACAGCTTTCATGA
TGTCCGGGACACGGAGCCGTATCACCATGCCCATCTGTGGAATGAATGTA
CCGACGCAACATTGCAGAATGGAGATTGCATCTTGAATATAACGACTGTG
AGCGAACTGGTTTTTAGCCCCTTGGACGCGTTTGACGCGGGCTTCCCCCC
AGTCACCGCGTCGGAGATCCGGGCCAAAATGAAGAGCAGGCAAGCGATTT
ATCAGCAGACGATTGACCCGACTGCCAAGCTGGCCGACACTGACAATCCT
GATTTTTGTAAAGAGATTAATGTGAGAGCGTTTGCATGGGCGTATGCACA
GGCCCCGCCGCGGACGAGGGAGAGGTTTCGGGCCGTTGGGGTGCAGCCTG
TGTTTGATGCTGACATTCGACATCGTGTACAGATTGGTCCTCTGTGGATC
AATAGTCCGTTGAGGTTGCAAGAACGATACGATAAAGGTTCAGGAAAGTA
TGTTTGGCATGTGCGAGCGCCCGCCCTGGTGACTGATGTGAGTGCGCATA
TCTATCCGGATTCGGCTGGGTATCATTATTGCAAGTTACTCTCGCCGGCG
AGGGCACTTGAATGGATGTATGTAGACGGGCTGAGGAGGTATGATCGACA
GAGTGGAGCACTGGAGGAGGAGGAGGGGAAAGAGGAGAATCAGGTGGAGG
AAGAGGAGGAGGGAGCAGCGGTCTCTGTTGATGAGATGGTCCATTGGAGG
GATAGAGAGGCGGCTACCACGCGCCAGGCGTCCTTGCGGGCGATGGAATA
A

Synonyms

Publications