jgi.p|Nanoce1779_2|588046, mRNA_4834 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588046
Unique Name	mRNA_4834
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1166
Alignment location	scaffold_9:731252..733582 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588132
Track	FilteredModels2
ProteinId	588046

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:731252..733582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588046	gene_4834	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588046	mRNA_4834-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4834	CDS_4834	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:731252..733582+
coding sequence from alignment at scaffold_9:731252..733582+

mRNA sequence

>mRNA_4834 ID=mRNA_4834|Name=jgi.p|Nanoce1779_2|588046|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp
ACAGGCGCAGATTAGCTTGGTTGCCTGGGTTCGCCCCTCTACCAGCATCA
TCTTTGCTTGGCTCGTCGTCGTAAAGTCCTAGCTTCTTAATCGAAGGACA
ACAAGCCAAGGCATACGACCATGGCATCTGTGATACAAAAATATATCAAG
GCCTACCGGCTCTATGGCTGGCGTGAGACCCTCAGTAAGATGTACTCGAT
GGGCGAGGTCAAGTTTGGAGAACTGAAGGGCGAAGACGTGAATGGCAACA
AGTACTTTGAGAACTTGGAGTACCCCTTTGGTCAGCACCGATGGGTTGAG
TACAAGGACATCCACAACTACGAGCCTTCCAGCATTGCACCCGAGTGGCA
TGGATGGATCCATCACATGACAGACGAGGTGCCCGTGCCCGGCAAGGCGG
GAGTGACGGAATCGGGGATGAAAATTGCCGAGGGGCAGCATACCCCTTAT
CAAGTGGCGGCCGGCAAGACCGAGTATCAGATGGAAGAGCAGTTGAACTG
GACCGCTCACCGTTCGCGCGGTTATGGGGTAGGCAGCTTGAAGCAGAAGT
CTGGAGAGCCTGACAGGTTCTGGGTGCAGCCGGGGCACGCCTTGGCGGAG
AAGGGCATGTCTAAGGCGAAGGGGGGAAGGTTTGAGGGACTGAAGGGATA
CGAATCGTGGAAGCCCTCAGACCCGGAGGGGAAGGACACCAAGCAGCCTA
TCCGCTCGCTGGACGAGAACTAGAGGACTTCGGGGGTAGGCATAGAAATT
GCATTGATAAGGACAAGGCGGGGAGGCACGTGGGGTGTGTAGACAATGGA
GGGCTTGGAGGGGAGGGGACAGGAAATGGGAAACGAAGGAGGTTGAAGGG
GTGGGAAGATGACAGATTTCTAGGGAATGTGTGTGAGAGAGAAAGTCTCT
CTGTGTACGACGACAAAAAAAAACAATAAATGTTCCTGATAGAGCATAGC
GATTTATGGTACATGCAGCTTTTTGGTTGTTTCTGTACGCCTTGATGAGC
GGGAGATGACACATGTGTGTCTCTTACATCACATACTTTATGGGCGTGTC
TCTTCTCTCGAATACTCAATAACGCAAAGGACGTCTAATAGGGGGGGGGC
GTGGGGTGAAAAGTACGGAGATACTCCGAGCGGTCACAATCTCTACTCTT
TTCCTGTCGACCTGAC

protein sequence of jgi.p|Nanoce1779_2|588046

>mRNA_4834-protein ID=mRNA_4834-protein|Name=jgi.p|Nanoce1779_2|588046|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MASVIQKYIKAYRLYGWRETLSKMYSMGEVKFGELKGEDVNGNKYFENLE
YPFGQHRWVEYKDIHNYEPSSIAPEWHGWIHHMTDEVPVPGKAGVTESGM
KIAEGQHTPYQVAAGKTEYQMEEQLNWTAHRSRGYGVGSLKQKSGEPDRF
WVQPGHALAEKGMSKAKGGRFEGLKGYESWKPSDPEGKDTKQPIRSLDEN
*

mRNA from alignment at scaffold_9:731252..733582+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4834 ID=mRNA_4834|Name=jgi.p|Nanoce1779_2|588046|organism=Nannochloropsis oceanica|type=mRNA|length=2331bp|location=Sequence derived from alignment at scaffold_9:731252..733582+ (Nannochloropsis oceanica)
ACAGGCGCAGATTAGCTTGGTTGCCTGGGTTCGCCCCTCTACCAGCATCA
TCTTTGCTTGGCTCGTCGTCGTAAAGTCCTAGCTTCTTAATCGAAGGACA
ACAAGGTACGTTGTCGGCGCTGGCACGCCCATCTTGCGAAGCAGCGATGA
AGCAGTGAGTGTGCAGTGCCCTGCGGTGCCCAGAGTCAGCAGGGATTGTT
GTTCGGCGCAGGAGAGGAGGAAGAAATGAGGAGCAGCGTTCCATCATGCG
CTTCTGGCTTGGTATTAAAATCTCATGCTCACACACGCCACCTCTGAACC
TACCTGTACAAAGCCAAGGCATACGACCATGGCATCTGTGATACAAAAAT
ATATCAAGGCCTACCGGCTCTATGGCTGGCGTGAGACCCTCAGTAAGATG
TACTCGGTACGTTGTGCTACCCATTTCTCCCTCCTTTGATCCCTACCCTT
CTTCCACCCTTTCCCTTTCTCTAGCTGCCCCTCTCTTTCCAAGCTCATAT
GAATGTGCAGCTTAGATTACTGAACTTATTGTACGTCATTCGGTGATATG
GATCATGCAGTAGGAAAAACCGACCTTAAGAAAAACCGACCTTTAAAGAA
TACTCACTCCTTCCCTCCCTCCCCGTCCTTCCCTTTCCTTCCTTTTCAGA
TGGGCGAGGTCAAGTTTGGAGAACTGAAGGGCGAAGACGTGAATGGCAAC
AAGTACTTTGAGAACTTGGAGTACCCCTTTGGTCAGCACCGATGGGTTGA
GTACAAGGTGAGGAGGGAGAAGTGGAGGGAATTTTGTGTTGGAGAGGGCT
GTGTGAAGTCCCTCTCTTCCACCCCTCCCTGATGACGATGACAGGGATTC
AGGCGTAAGATGCGACGGAGAGAATGGTGAAAAGGATTGTTCTGATGCTC
CCGCGCACATATATATATATATAGGACAAGACAACTGGCATTCACACTTT
CTTCCTCCCTCCCCTCCCTCCCCTCCCTCAGGACATCCACAACTACGAGC
CTTCCAGCATTGCACCCGAGTGGCATGGATGGATCCATCACATGACAGAC
GAGGTGCCCGTGCCCGGCAAGGCGGGAGTGACGGAATCGGGGATGAAAAT
TGCCGAGGGGCAGCATACCCCTTATCAAGTAAAAACAAAAGTCCCTCCCT
TTTTTTCTTTCCCCCCCCCCCCCTCTCACCCTCTTTGACGTGAATGACTT
GCCCTCTTTTGCTCTATCCCTGATGTGAATGATAAAATCTTCTGCCGTTC
AAGCCCAGAGAGGCGGAGTCAAGAGCGAGGGGGGGGGAGGGTGAGGGACG
GAGGAAGGAAGGGACGAAGGGAAAGCTGAATGCTTCTCCTTCTTTCGAAA
AAATGACAATGCAGGTAACGATAAATACAAGCCTACTCACTCGATCCGTC
TTCCTTCCCCTCCCCCCCCCCTGTTTACCCGCCCCCCCCCCCTTCTTCTC
CTCGTCCCTCAGGTGGCGGCCGGCAAGACCGAGTATCAGATGGAAGAGCA
GTTGAACTGGACCGCTCACCGTTCGCGCGGTTATGGGGTAGGCAGCTTGA
AGCAGAAGTCTGGAGAGCCTGACAGGTTCTGGGTGCAGCCGGGGCACGCC
TTGGCGGAGAAGGGCATGTCTAAGGCGAAGGGGGGAAGGTTTGAGGTGCG
TTGCGGGGGAGAGGGGGAGGGAGGAGGGAAGGAGGAAGAGGAGGAATGAG
AATTATTGGACGATTGAAGTCGAACAGCCCCAAATCAGCCGCGCTTGCAC
TCTTTATTTCCTCGTTTTCACTCTCCCCCGGACCTTTCATGTTTTTAATA
GGGACTGAAGGGATACGAATCGTGGAAGCCCTCAGACCCGGAGGGGAAGG
ACACCAAGCAGCCTATCCGCTCGCTGGACGAGAACTAGAGGACTTCGGGG
GTAGGCATAGAAATTGCATTGATAAGGACAAGGCGGGGAGGCACGTGGGG
TGTGTAGACAATGGAGGGCTTGGAGGGGAGGGGACAGGAAATGGGAAACG
AAGGAGGTTGAAGGGGTGGGAAGATGACAGATTTCTAGGGAATGTGTGTG
AGAGAGAAAGTCTCTCTGTGTACGACGACAAAAAAAAACAATAAATGTTC
CTGATAGAGCATAGCGATTTATGGTACATGCAGCTTTTTGGTTGTTTCTG
TACGCCTTGATGAGCGGGAGATGACACATGTGTGTCTCTTACATCACATA
CTTTATGGGCGTGTCTCTTCTCTCGAATACTCAATAACGCAAAGGACGTC
TAATAGGGGGGGGGCGTGGGGTGAAAAGTACGGAGATACTCCGAGCGGTC
ACAATCTCTACTCTTTTCCTGTCGACCTGAC

Coding sequence (CDS) from alignment at scaffold_9:731252..733582+

>mRNA_4834 ID=mRNA_4834|Name=jgi.p|Nanoce1779_2|588046|organism=Nannochloropsis oceanica|type=CDS|length=3015bp|location=Sequence derived from alignment at scaffold_9:731252..733582+ (Nannochloropsis oceanica)
ATGGCATCTGTGATACAAAAATATATCAAGGCCTACCGGCTCTATGGCTG
GCGTGAGACCCTCAGTAAGATGTACTCGATGGGCGAGGTCAAGTTTGGAG
AACTGAAGGGCGAAGACGTGAATGGCAACAAGTACTTTGAGAACTTGGAG
TACCCCTTTGGTCAGCACCGATGGGTTGAGTACAAGGACATCCACAACTA
CGAGCCTTCCAGCATTGCACCCGAGTGGCATGGATGGATCCATCACATGA
CAGACGAGGTGCCCGTGCCCGGCAAGGCGGGAGTGACGGAATCGGGGATG
AAAATTGCCGAGGGGCAGCATACCCCTTATCAAGTGGCGGCCGGCAAGAC
CGAGTATCAGATGGAAGAGCAGTTGAACTGGACCGCTCACCGTTCGCGCG
GTTATGGGGTAGGCAGCTTGAAGCAGAAGTCTGGAGAGCCTGACAGGTTC
TGGGTGCAGCCGGGGCACGCCTTGGCGGAGAAGGGCATGTCTAAGGCGAA
GGGGGGAAGGTTTGAGGGACTGAAGGGATACGAATCGTGGAAGCCCTCAG
ACCCGGAGGGGAAGGACACCAAGCAGCCTATCCGCTCGCTGGACGAGAAC
TAGATGGCATCTGTGATACAAAAATATATCAAGGCCTACCGGCTCTATGG
CTGGCGTGAGACCCTCAGTAAGATGTACTCGATGGGCGAGGTCAAGTTTG
GAGAACTGAAGGGCGAAGACGTGAATGGCAACAAGTACTTTGAGAACTTG
GAGTACCCCTTTGGTCAGCACCGATGGGTTGAGTACAAGGACATCCACAA
CTACGAGCCTTCCAGCATTGCACCCGAGTGGCATGGATGGATCCATCACA
TGACAGACGAGGTGCCCGTGCCCGGCAAGGCGGGAGTGACGGAATCGGGG
ATGAAAATTGCCGAGGGGCAGCATACCCCTTATCAAGTGGCGGCCGGCAA
GACCGAGTATCAGATGGAAGAGCAGTTGAACTGGACCGCTCACCGTTCGC
GCGGTTATGGGGTAGGCAGCTTGAAGCAGAAGTCTGGAGAGCCTGACAGG
TTCTGGGTGCAGCCGGGGCACGCCTTGGCGGAGAAGGGCATGTCTAAGGC
GAAGGGGGGAAGGTTTGAGGGACTGAAGGGATACGAATCGTGGAAGCCCT
CAGACCCGGAGGGGAAGGACACCAAGCAGCCTATCCGCTCGCTGGACGAG
AACTAGATGGCATCTGTGATACAAAAATATATCAAGGCCTACCGGCTCTA
TGGCTGGCGTGAGACCCTCAGTAAGATGTACTCGATGGGCGAGGTCAAGT
TTGGAGAACTGAAGGGCGAAGACGTGAATGGCAACAAGTACTTTGAGAAC
TTGGAGTACCCCTTTGGTCAGCACCGATGGGTTGAGTACAAGGACATCCA
CAACTACGAGCCTTCCAGCATTGCACCCGAGTGGCATGGATGGATCCATC
ACATGACAGACGAGGTGCCCGTGCCCGGCAAGGCGGGAGTGACGGAATCG
GGGATGAAAATTGCCGAGGGGCAGCATACCCCTTATCAAGTGGCGGCCGG
CAAGACCGAGTATCAGATGGAAGAGCAGTTGAACTGGACCGCTCACCGTT
CGCGCGGTTATGGGGTAGGCAGCTTGAAGCAGAAGTCTGGAGAGCCTGAC
AGGTTCTGGGTGCAGCCGGGGCACGCCTTGGCGGAGAAGGGCATGTCTAA
GGCGAAGGGGGGAAGGTTTGAGGGACTGAAGGGATACGAATCGTGGAAGC
CCTCAGACCCGGAGGGGAAGGACACCAAGCAGCCTATCCGCTCGCTGGAC
GAGAACTAGATGGCATCTGTGATACAAAAATATATCAAGGCCTACCGGCT
CTATGGCTGGCGTGAGACCCTCAGTAAGATGTACTCGATGGGCGAGGTCA
AGTTTGGAGAACTGAAGGGCGAAGACGTGAATGGCAACAAGTACTTTGAG
AACTTGGAGTACCCCTTTGGTCAGCACCGATGGGTTGAGTACAAGGACAT
CCACAACTACGAGCCTTCCAGCATTGCACCCGAGTGGCATGGATGGATCC
ATCACATGACAGACGAGGTGCCCGTGCCCGGCAAGGCGGGAGTGACGGAA
TCGGGGATGAAAATTGCCGAGGGGCAGCATACCCCTTATCAAGTGGCGGC
CGGCAAGACCGAGTATCAGATGGAAGAGCAGTTGAACTGGACCGCTCACC
GTTCGCGCGGTTATGGGGTAGGCAGCTTGAAGCAGAAGTCTGGAGAGCCT
GACAGGTTCTGGGTGCAGCCGGGGCACGCCTTGGCGGAGAAGGGCATGTC
TAAGGCGAAGGGGGGAAGGTTTGAGGGACTGAAGGGATACGAATCGTGGA
AGCCCTCAGACCCGGAGGGGAAGGACACCAAGCAGCCTATCCGCTCGCTG
GACGAGAACTAGATGGCATCTGTGATACAAAAATATATCAAGGCCTACCG
GCTCTATGGCTGGCGTGAGACCCTCAGTAAGATGTACTCGATGGGCGAGG
TCAAGTTTGGAGAACTGAAGGGCGAAGACGTGAATGGCAACAAGTACTTT
GAGAACTTGGAGTACCCCTTTGGTCAGCACCGATGGGTTGAGTACAAGGA
CATCCACAACTACGAGCCTTCCAGCATTGCACCCGAGTGGCATGGATGGA
TCCATCACATGACAGACGAGGTGCCCGTGCCCGGCAAGGCGGGAGTGACG
GAATCGGGGATGAAAATTGCCGAGGGGCAGCATACCCCTTATCAAGTGGC
GGCCGGCAAGACCGAGTATCAGATGGAAGAGCAGTTGAACTGGACCGCTC
ACCGTTCGCGCGGTTATGGGGTAGGCAGCTTGAAGCAGAAGTCTGGAGAG
CCTGACAGGTTCTGGGTGCAGCCGGGGCACGCCTTGGCGGAGAAGGGCAT
GTCTAAGGCGAAGGGGGGAAGGTTTGAGGGACTGAAGGGATACGAATCGT
GGAAGCCCTCAGACCCGGAGGGGAAGGACACCAAGCAGCCTATCCGCTCG
CTGGACGAGAACTAG

Synonyms

Publications