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Properties
| Property Name | Value |
|---|
| TranscriptId | 588127 |
| Track | FilteredModels2 |
| ProteinId | 588041 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:729543..730972 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4833 ID=mRNA_4833|Name=jgi.p|Nanoce1779_2|588041|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
CAACAGGCCATAAATGCGCCGCCCGCCAGGCCGGGTGCCGGTGCATTACC
TGCTCATGCTTGTCGCCATAATTACGACGATGCTCCTACGTGCGTCGCAC
GGCTTTCCCATCGTCTTTTCTGCTACTTCGCTTAGACATGCCCGGCGTTT
TTTTTCATTGAAAGCCGTGACTCGCATGACCTCATCTATGCTCGAGATCC
AAGACGTGACGCTGCCGGGCGAACCCACGCGCGAGGTCCATGTGCTCGAC
ACAGGGCCGTGCACAGGTAGACCTATCGCACCCCCCATCATCCTAATCGG
GGGGACGGCCCAAGTAATCACCAGTTGGCAAGGCCACATTCAAGCCTTAG
GCAAAAATCGACGTCTTATTATATATGAGGCCCGGGGCCAAGGCCGCCGG
ACCCTTTTGGATTTGACCCAAGCGTCCCTGGGCACCCACATAGAGGATTT
TCGCCGCATCCACGCCGCTCTCCAACTCAATGGTCCTGTTGACTTATGTG
GCTTCAGCTTTGGCGGCCGTGTCAGCCTTGGCGTGGCCGCGCAAGCCCCC
GAGCTGGTGCGTCGCTTGGTGCTGACGGGTGTGCCTGCTGAGCGCGACGC
GGTGGGAAGACTTATCCTACAGTCGTGGAAAGCAGGTAGGTGTTTCTACG
CTGGAGGGTGGGATCAGGAGATCAAGAACAGGAAGGGAGGAAAGAAGGTA
GTCTCATGCCAATCCCTTTCTCTTTCACCCCACACAGCCCTCGGACGAGG
AAGCCTGCATGAGTTCGCCTGGAACTCCATGCTTGCCTGTCATGGACCCG
CCTTCCTGACCAAGAACGAGAAGAAGATCCCTGAATGGGTTGACTTCATC
TACCGATCCAACACCGTGGAGGGGATTCTATCCATTGTCGAACAGTCACA
GGTATATGATGTGCAAGACCCTATGCATACCCTCCAGCTGGCCAAGCAAG
TGGTGGCTCCCACCCTCCTTCTGGGGGGGGATGAGGACAGAGTGGCCAGT
GCCTTAGAGATCGAACGGTTAGCGGCCGAGGCGGGCAAGGGGTGGGATGT
TGTTTTGTTCGAAGGAGCGAATCACAATTGTGTGTTTGAAACGCCAGTTG
CGTGGGCGAAAGAGGTGGTGCGGTTTCTCAGCGAGGGTTAGGGAATGAAG
AAGGGAAAGAGGGAGGGAGAAAGTAGACGAGACTGTGTTCTAGATCTTCC
ATGTACGTCTGTTTTGAAAGAAGAGGGATGGTGGACAGCGCCCCAAAACT
CTTCCCTTTCGGAGACTGGTGAAGAGGGAGGGAGGGAGGAATTGAAACGG
TGGCGCGCGCCTTGGGGGCGGAATGTAAATGTAACCAATAGAAAATAATA
TAGAACTTGTACCGATATACAAGCGGTGCAAGTGCCCAACCAATACACAC
AGAACAAGACGGATTTTGAAAATAAAGACG back to topprotein sequence of jgi.p|Nanoce1779_2|588041 >mRNA_4833-protein ID=mRNA_4833-protein|Name=jgi.p|Nanoce1779_2|588041|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MRRPPGRVPVHYLLMLVAIITTMLLRASHGFPIVFSATSLRHARRFFSLK
AVTRMTSSMLEIQDVTLPGEPTREVHVLDTGPCTGRPIAPPIILIGGTAQ
VITSWQGHIQALGKNRRLIIYEARGQGRRTLLDLTQASLGTHIEDFRRIH
AALQLNGPVDLCGFSFGGRVSLGVAAQAPELVRRLVLTGVPAERDAVGRL
ILQSWKAGRCFYAGGWDQEIKNRKGGKKVVSCQSLSLSPHTALGRGSLHE
FAWNSMLACHGPAFLTKNEKKIPEWVDFIYRSNTVEGILSIVEQSQVYDV
QDPMHTLQLAKQVVAPTLLLGGDEDRVASALEIERLAAEAGKGWDVVLFE
GANHNCVFETPVAWAKEVVRFLSEG* back to topmRNA from alignment at scaffold_9:729543..730972- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4833 ID=mRNA_4833|Name=jgi.p|Nanoce1779_2|588041|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp|location=Sequence derived from alignment at scaffold_9:729543..730972- (Nannochloropsis oceanica)
CAACAGGCCATAAATGCGCCGCCCGCCAGGCCGGGTGCCGGTGCATTACC
TGCTCATGCTTGTCGCCATAATTACGACGATGCTCCTACGTGCGTCGCAC
GGCTTTCCCATCGTCTTTTCTGCTACTTCGCTTAGACATGCCCGGCGTTT
TTTTTCATTGAAAGCCGTGACTCGCATGACCTCATCTATGCTCGAGATCC
AAGACGTGACGCTGCCGGGCGAACCCACGCGCGAGGTCCATGTGCTCGAC
ACAGGGCCGTGCACAGGTAGACCTATCGCACCCCCCATCATCCTAATCGG
GGGGACGGCCCAAGTAATCACCAGTTGGCAAGGCCACATTCAAGCCTTAG
GCAAAAATCGACGTCTTATTATATATGAGGCCCGGGGCCAAGGCCGCCGG
ACCCTTTTGGATTTGACCCAAGCGTCCCTGGGCACCCACATAGAGGATTT
TCGCCGCATCCACGCCGCTCTCCAACTCAATGGTCCTGTTGACTTATGTG
GCTTCAGCTTTGGCGGCCGTGTCAGCCTTGGCGTGGCCGCGCAAGCCCCC
GAGCTGGTGCGTCGCTTGGTGCTGACGGGTGTGCCTGCTGAGCGCGACGC
GGTGGGAAGACTTATCCTACAGTCGTGGAAAGCAGGTAGGTGTTTCTACG
CTGGAGGGTGGGATCAGGAGATCAAGAACAGGAAGGGAGGAAAGAAGGTA
GTCTCATGCCAATCCCTTTCTCTTTCACCCCACACAGCCCTCGGACGAGG
AAGCCTGCATGAGTTCGCCTGGAACTCCATGCTTGCCTGTCATGGACCCG
CCTTCCTGACCAAGAACGAGAAGAAGATCCCTGAATGGGTTGACTTCATC
TACCGATCCAACACCGTGGAGGGGATTCTATCCATTGTCGAACAGTCACA
GGTATATGATGTGCAAGACCCTATGCATACCCTCCAGCTGGCCAAGCAAG
TGGTGGCTCCCACCCTCCTTCTGGGGGGGGATGAGGACAGAGTGGCCAGT
GCCTTAGAGATCGAACGGTTAGCGGCCGAGGCGGGCAAGGGGTGGGATGT
TGTTTTGTTCGAAGGAGCGAATCACAATTGTGTGTTTGAAACGCCAGTTG
CGTGGGCGAAAGAGGTGGTGCGGTTTCTCAGCGAGGGTTAGGGAATGAAG
AAGGGAAAGAGGGAGGGAGAAAGTAGACGAGACTGTGTTCTAGATCTTCC
ATGTACGTCTGTTTTGAAAGAAGAGGGATGGTGGACAGCGCCCCAAAACT
CTTCCCTTTCGGAGACTGGTGAAGAGGGAGGGAGGGAGGAATTGAAACGG
TGGCGCGCGCCTTGGGGGCGGAATGTAAATGTAACCAATAGAAAATAATA
TAGAACTTGTACCGATATACAAGCGGTGCAAGTGCCCAACCAATACACAC
AGAACAAGACGGATTTTGAAAATAAAGACG back to topCoding sequence (CDS) from alignment at scaffold_9:729543..730972- >mRNA_4833 ID=mRNA_4833|Name=jgi.p|Nanoce1779_2|588041|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_9:729543..730972- (Nannochloropsis oceanica)
ATGCGCCGCCCGCCAGGCCGGGTGCCGGTGCATTACCTGCTCATGCTTGT
CGCCATAATTACGACGATGCTCCTACGTGCGTCGCACGGCTTTCCCATCG
TCTTTTCTGCTACTTCGCTTAGACATGCCCGGCGTTTTTTTTCATTGAAA
GCCGTGACTCGCATGACCTCATCTATGCTCGAGATCCAAGACGTGACGCT
GCCGGGCGAACCCACGCGCGAGGTCCATGTGCTCGACACAGGGCCGTGCA
CAGGTAGACCTATCGCACCCCCCATCATCCTAATCGGGGGGACGGCCCAA
GTAATCACCAGTTGGCAAGGCCACATTCAAGCCTTAGGCAAAAATCGACG
TCTTATTATATATGAGGCCCGGGGCCAAGGCCGCCGGACCCTTTTGGATT
TGACCCAAGCGTCCCTGGGCACCCACATAGAGGATTTTCGCCGCATCCAC
GCCGCTCTCCAACTCAATGGTCCTGTTGACTTATGTGGCTTCAGCTTTGG
CGGCCGTGTCAGCCTTGGCGTGGCCGCGCAAGCCCCCGAGCTGGTGCGTC
GCTTGGTGCTGACGGGTGTGCCTGCTGAGCGCGACGCGGTGGGAAGACTT
ATCCTACAGTCGTGGAAAGCAGGTAGGTGTTTCTACGCTGGAGGGTGGGA
TCAGGAGATCAAGAACAGGAAGGGAGGAAAGAAGGTAGTCTCATGCCAAT
CCCTTTCTCTTTCACCCCACACAGCCCTCGGACGAGGAAGCCTGCATGAG
TTCGCCTGGAACTCCATGCTTGCCTGTCATGGACCCGCCTTCCTGACCAA
GAACGAGAAGAAGATCCCTGAATGGGTTGACTTCATCTACCGATCCAACA
CCGTGGAGGGGATTCTATCCATTGTCGAACAGTCACAGGTATATGATGTG
CAAGACCCTATGCATACCCTCCAGCTGGCCAAGCAAGTGGTGGCTCCCAC
CCTCCTTCTGGGGGGGGATGAGGACAGAGTGGCCAGTGCCTTAGAGATCG
AACGGTTAGCGGCCGAGGCGGGCAAGGGGTGGGATGTTGTTTTGTTCGAA
GGAGCGAATCACAATTGTGTGTTTGAAACGCCAGTTGCGTGGGCGAAAGA
GGTGGTGCGGTTTCTCAGCGAGGGTTAG back to top
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