jgi.p|Nanoce1779_2|670565, mRNA_4832 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670565
Unique Name	mRNA_4832
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1752
Alignment location	scaffold_9:727672..729423 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670651
Track	FilteredModels2
ProteinId	670565

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:727672..729423 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670565	gene_4832	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670565	mRNA_4832-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4832	CDS_4832	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:727672..729423+
coding sequence from alignment at scaffold_9:727672..729423+

mRNA sequence

>mRNA_4832 ID=mRNA_4832|Name=jgi.p|Nanoce1779_2|670565|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
ATGTCCGCTTCGACCCTCTTATTAAGGCGCTCGTGGGCCCGAACTGCTGC
CTGTATGACGAATTCGTCCACTTTTCCACGGCGCGCCTGGTCTTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTACTCCTCCTCCTCCAGCACCCCG
GCTGCCGTTACCGCCGCTGCCACGGCTATCGCTTCTCTGCTCTACCTGGC
CTCTTCTGAGCCCAAGAGTTTTCACAGTAATTCGTCTTCCGCCTCATTCT
GCGCCCCTTCCAAAAGCACGCCCCAAACCCTTTACGTGACAGGTTCAGAG
AGCGGGCGAGGTTTCAAGGAGACCGTGGTTGGAGTGCCCAAAGAAGTCGT
TTTTCCTGGCCCACCCAGCCCGATTGACAGTGTGAGCTTCGGTCCTGCTT
GGGCAGCGGTAGCCAAGAATGGAAACGTTTATCTGTGCTCGGGCTTGGGG
GAGGGAGGTCCGACCGGAGGAGCGATGGTGATCACCAGTACGTTGCATGA
GGCGAAGGGTGGATGGTTTGGAGCGGCACAGGCAGTGGTGCAGGTGGCAT
GTAGCCGAGATAAAATCTATGGACGGACGAGCAAAGGAGAGATATTATAT
TGGACACGCGTGCCATCAGCGGCAAACGAGGAAAAAGGTGCAGGGCAGTC
AGCAGCAGCAGTAACAGCAGCAGGAGCTGCAGCGTCGTCTCAACCACGTT
TTAAAGGCCCGTACAAATACAGCACTTGGGAAACCAACAGCGACAACAAC
ATTATCGGACAAAAACGCCCTGCATCCGTTACACACGTGAGTGCCGGGCC
AGAGCATGCACTCTTCGTTCTGAGCAACGGTGCGGTCTATGGGGTGGGGG
CAAACCCCGACGGCCGGCTCGGACTCGGGCCACAACAACTACATCAAGAA
GAAGGCGGAGAACATGTCAGGAACAACAATTACCACCGCAAGAATTTCTT
TTCCTCCCCTATTGCCATGAAGCCCCTTCCGCAGGGGAAGAGAGTCCTCA
GCGCGGCCTGTGGAGGGACGCACTCTCTCCTGCTGGATGAGGATGGGGGG
GCGTGGTCCTGCGGGGCCGACGCGTGGTACCAACTTGCACAGGGGGAGAC
ATGGAAAGTGACGAAAGATCGCCCCGAAGCTGTTTTTTGGGAGCCCAAGA
AAATCCGGGCGTTTGAAGATGTGATTGTGGGCGCCATTGCCGCAGGAGAG
AACCATTCCCTCTTTTCTGTCGTCGTGGAGGAGGGTGGTTACTGGCTCGA
AAAGGGCAATTTTGGAAAGGCTGCCAAGACACCTGCGAGGGTTGTGGAGA
TGTGGGCGTCGGGTTTTGGTCAGTACGGGCAGCTAGGAGACAGGGCTTAC
GTGCACTTGTCGGTGGCAAAGCAGATTAAGGATCTGCGGTTGTTGACATT
CCCCGAAGTGAAGTTGCCCGTGCCGGTGTTGGGGTGTGGGAGCAACCACA
GTGCGGCGGTTGTGGTGGAGCCGAGCGTGAAGGCCAACAGTCGCGGAGGC
CCACCCTCGAGAGACGTTGAATTAAAATACAAACCACAGGTGTACGTGTG
GGGTCACAATTTGGGGGGCCAATGCGGGACGGGGAAGGCCGGTAATATCG
CCAAGCCAGTGCAGCTTGCGGTGGAAGTGGAGGAGGGACGGAAACAGGGA
AGGATGGTAGAGGGGGTGGTGTGTGGCTATGATTACACGGGCTTTGTGGT
GAGGGTGGATGAGGGAGGGGAGGAGAGGGGAGGTAAGGGGGGCAGCAAAT
GA

protein sequence of jgi.p|Nanoce1779_2|670565

>mRNA_4832-protein ID=mRNA_4832-protein|Name=jgi.p|Nanoce1779_2|670565|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MSASTLLLRRSWARTAACMTNSSTFPRRAWSSSSSSSSSSSSYSSSSSTP
AAVTAAATAIASLLYLASSEPKSFHSNSSSASFCAPSKSTPQTLYVTGSE
SGRGFKETVVGVPKEVVFPGPPSPIDSVSFGPAWAAVAKNGNVYLCSGLG
EGGPTGGAMVITSTLHEAKGGWFGAAQAVVQVACSRDKIYGRTSKGEILY
WTRVPSAANEEKGAGQSAAAVTAAGAAASSQPRFKGPYKYSTWETNSDNN
IIGQKRPASVTHVSAGPEHALFVLSNGAVYGVGANPDGRLGLGPQQLHQE
EGGEHVRNNNYHRKNFFSSPIAMKPLPQGKRVLSAACGGTHSLLLDEDGG
AWSCGADAWYQLAQGETWKVTKDRPEAVFWEPKKIRAFEDVIVGAIAAGE
NHSLFSVVVEEGGYWLEKGNFGKAAKTPARVVEMWASGFGQYGQLGDRAY
VHLSVAKQIKDLRLLTFPEVKLPVPVLGCGSNHSAAVVVEPSVKANSRGG
PPSRDVELKYKPQVYVWGHNLGGQCGTGKAGNIAKPVQLAVEVEEGRKQG
RMVEGVVCGYDYTGFVVRVDEGGEERGGKGGSK*

mRNA from alignment at scaffold_9:727672..729423+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4832 ID=mRNA_4832|Name=jgi.p|Nanoce1779_2|670565|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at scaffold_9:727672..729423+ (Nannochloropsis oceanica)
ATGTCCGCTTCGACCCTCTTATTAAGGCGCTCGTGGGCCCGAACTGCTGC
CTGTATGACGAATTCGTCCACTTTTCCACGGCGCGCCTGGTCTTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTACTCCTCCTCCTCCAGCACCCCG
GCTGCCGTTACCGCCGCTGCCACGGCTATCGCTTCTCTGCTCTACCTGGC
CTCTTCTGAGCCCAAGAGTTTTCACAGTAATTCGTCTTCCGCCTCATTCT
GCGCCCCTTCCAAAAGCACGCCCCAAACCCTTTACGTGACAGGTTCAGAG
AGCGGGCGAGGTTTCAAGGAGACCGTGGTTGGAGTGCCCAAAGAAGTCGT
TTTTCCTGGCCCACCCAGCCCGATTGACAGTGTGAGCTTCGGTCCTGCTT
GGGCAGCGGTAGCCAAGAATGGAAACGTTTATCTGTGCTCGGGCTTGGGG
GAGGGAGGTCCGACCGGAGGAGCGATGGTGATCACCAGTACGTTGCATGA
GGCGAAGGGTGGATGGTTTGGAGCGGCACAGGCAGTGGTGCAGGTGGCAT
GTAGCCGAGATAAAATCTATGGACGGACGAGCAAAGGAGAGATATTATAT
TGGACACGCGTGCCATCAGCGGCAAACGAGGAAAAAGGTGCAGGGCAGTC
AGCAGCAGCAGTAACAGCAGCAGGAGCTGCAGCGTCGTCTCAACCACGTT
TTAAAGGCCCGTACAAATACAGCACTTGGGAAACCAACAGCGACAACAAC
ATTATCGGACAAAAACGCCCTGCATCCGTTACACACGTGAGTGCCGGGCC
AGAGCATGCACTCTTCGTTCTGAGCAACGGTGCGGTCTATGGGGTGGGGG
CAAACCCCGACGGCCGGCTCGGACTCGGGCCACAACAACTACATCAAGAA
GAAGGCGGAGAACATGTCAGGAACAACAATTACCACCGCAAGAATTTCTT
TTCCTCCCCTATTGCCATGAAGCCCCTTCCGCAGGGGAAGAGAGTCCTCA
GCGCGGCCTGTGGAGGGACGCACTCTCTCCTGCTGGATGAGGATGGGGGG
GCGTGGTCCTGCGGGGCCGACGCGTGGTACCAACTTGCACAGGGGGAGAC
ATGGAAAGTGACGAAAGATCGCCCCGAAGCTGTTTTTTGGGAGCCCAAGA
AAATCCGGGCGTTTGAAGATGTGATTGTGGGCGCCATTGCCGCAGGAGAG
AACCATTCCCTCTTTTCTGTCGTCGTGGAGGAGGGTGGTTACTGGCTCGA
AAAGGGCAATTTTGGAAAGGCTGCCAAGACACCTGCGAGGGTTGTGGAGA
TGTGGGCGTCGGGTTTTGGTCAGTACGGGCAGCTAGGAGACAGGGCTTAC
GTGCACTTGTCGGTGGCAAAGCAGATTAAGGATCTGCGGTTGTTGACATT
CCCCGAAGTGAAGTTGCCCGTGCCGGTGTTGGGGTGTGGGAGCAACCACA
GTGCGGCGGTTGTGGTGGAGCCGAGCGTGAAGGCCAACAGTCGCGGAGGC
CCACCCTCGAGAGACGTTGAATTAAAATACAAACCACAGGTGTACGTGTG
GGGTCACAATTTGGGGGGCCAATGCGGGACGGGGAAGGCCGGTAATATCG
CCAAGCCAGTGCAGCTTGCGGTGGAAGTGGAGGAGGGACGGAAACAGGGA
AGGATGGTAGAGGGGGTGGTGTGTGGCTATGATTACACGGGCTTTGTGGT
GAGGGTGGATGAGGGAGGGGAGGAGAGGGGAGGTAAGGGGGGCAGCAAAT
GA

Coding sequence (CDS) from alignment at scaffold_9:727672..729423+

>mRNA_4832 ID=mRNA_4832|Name=jgi.p|Nanoce1779_2|670565|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_9:727672..729423+ (Nannochloropsis oceanica)
ATGTCCGCTTCGACCCTCTTATTAAGGCGCTCGTGGGCCCGAACTGCTGC
CTGTATGACGAATTCGTCCACTTTTCCACGGCGCGCCTGGTCTTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTACTCCTCCTCCTCCAGCACCCCG
GCTGCCGTTACCGCCGCTGCCACGGCTATCGCTTCTCTGCTCTACCTGGC
CTCTTCTGAGCCCAAGAGTTTTCACAGTAATTCGTCTTCCGCCTCATTCT
GCGCCCCTTCCAAAAGCACGCCCCAAACCCTTTACGTGACAGGTTCAGAG
AGCGGGCGAGGTTTCAAGGAGACCGTGGTTGGAGTGCCCAAAGAAGTCGT
TTTTCCTGGCCCACCCAGCCCGATTGACAGTGTGAGCTTCGGTCCTGCTT
GGGCAGCGGTAGCCAAGAATGGAAACGTTTATCTGTGCTCGGGCTTGGGG
GAGGGAGGTCCGACCGGAGGAGCGATGGTGATCACCAGTACGTTGCATGA
GGCGAAGGGTGGATGGTTTGGAGCGGCACAGGCAGTGGTGCAGGTGGCAT
GTAGCCGAGATAAAATCTATGGACGGACGAGCAAAGGAGAGATATTATAT
TGGACACGCGTGCCATCAGCGGCAAACGAGGAAAAAGGTGCAGGGCAGTC
AGCAGCAGCAGTAACAGCAGCAGGAGCTGCAGCGTCGTCTCAACCACGTT
TTAAAGGCCCGTACAAATACAGCACTTGGGAAACCAACAGCGACAACAAC
ATTATCGGACAAAAACGCCCTGCATCCGTTACACACGTGAGTGCCGGGCC
AGAGCATGCACTCTTCGTTCTGAGCAACGGTGCGGTCTATGGGGTGGGGG
CAAACCCCGACGGCCGGCTCGGACTCGGGCCACAACAACTACATCAAGAA
GAAGGCGGAGAACATGTCAGGAACAACAATTACCACCGCAAGAATTTCTT
TTCCTCCCCTATTGCCATGAAGCCCCTTCCGCAGGGGAAGAGAGTCCTCA
GCGCGGCCTGTGGAGGGACGCACTCTCTCCTGCTGGATGAGGATGGGGGG
GCGTGGTCCTGCGGGGCCGACGCGTGGTACCAACTTGCACAGGGGGAGAC
ATGGAAAGTGACGAAAGATCGCCCCGAAGCTGTTTTTTGGGAGCCCAAGA
AAATCCGGGCGTTTGAAGATGTGATTGTGGGCGCCATTGCCGCAGGAGAG
AACCATTCCCTCTTTTCTGTCGTCGTGGAGGAGGGTGGTTACTGGCTCGA
AAAGGGCAATTTTGGAAAGGCTGCCAAGACACCTGCGAGGGTTGTGGAGA
TGTGGGCGTCGGGTTTTGGTCAGTACGGGCAGCTAGGAGACAGGGCTTAC
GTGCACTTGTCGGTGGCAAAGCAGATTAAGGATCTGCGGTTGTTGACATT
CCCCGAAGTGAAGTTGCCCGTGCCGGTGTTGGGGTGTGGGAGCAACCACA
GTGCGGCGGTTGTGGTGGAGCCGAGCGTGAAGGCCAACAGTCGCGGAGGC
CCACCCTCGAGAGACGTTGAATTAAAATACAAACCACAGGTGTACGTGTG
GGGTCACAATTTGGGGGGCCAATGCGGGACGGGGAAGGCCGGTAATATCG
CCAAGCCAGTGCAGCTTGCGGTGGAAGTGGAGGAGGGACGGAAACAGGGA
AGGATGGTAGAGGGGGTGGTGTGTGGCTATGATTACACGGGCTTTGTGGT
GAGGGTGGATGAGGGAGGGGAGGAGAGGGGAGGTAAGGGGGGCAGCAAAT
GA

Synonyms

Publications