jgi.p|Nanoce1779_2|527465, mRNA_4830 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527465
Unique Name	mRNA_4830
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2220
Alignment location	scaffold_9:720477..722696 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	527551
Track	FilteredModels2
ProteinId	527465

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:720477..722696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527465	gene_4830	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527465	mRNA_4830-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4830	CDS_4830	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:720477..722696+
coding sequence from alignment at scaffold_9:720477..722696+

mRNA sequence

>mRNA_4830 ID=mRNA_4830|Name=jgi.p|Nanoce1779_2|527465|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp
ATGCGCCCACCCAGTCTGTCCTCCAAGGAGCTGAGCGAGTTTGACTTCAC
CGGCATTGACCAAGACCTGGCGCGTTTCCAGCAAGATGACTTTGTGAAAC
AGACCCTGTCTCGGGGTGTGGAACTGAAAGGCTACTCGACCCAAATCGAA
CAAGAACTCAAAGAAGTCGAAATTGAATCCGTCAAGGAATATGTTCAGCA
ATCTTCGAACGTCGTGGCCTTGCATGGTCAAATCCAATCCTGCGACTTGA
TTTTGGCGCGGATGCAAGAAATGCTGCTGGGGTTTCAGGCAGACTTGGGA
GGGATTAGTGATGAAATCAGACATCTACAAGAAGAATCTCGCTCCATGAG
TACCAAGCTCCAAAACCGTCGTGACGTGGAAGCCCAACTCCAGCTATTCC
TCGACAAGATGGTCCTACCTCCCGATATGGTTGCCACCCTTACCGGCAAG
GAGGTCAATGACGCCTACATGGAATACATCATTAATCTTAACGGGAAACT
CGCCTACGTCTCTCAATCCACCCCTGCCTCCGACGGCTCCTCCCTCGATC
TTGCTCCACAAGCCACAGAGGCCGGAAAGGAATTAGCGCCTAAATTAGAA
AGGCTACGACTCAAGGCAGTGGCGAATGCACGGGACTATTTTTTGCATCG
GATCGCAGAATTGATGAAGCCCAAGACGCATGTACAGATGCTCCAGCGGC
ATGGCTTATTGAAATACCAACATTTGTACGGCTTTCTCTTGGAATGTGCC
CCCGAAGTCGCGGAGGAAGTACGACTGAACTACGCGGAGACAATGGGCAA
AACGGTCTTCAGTTTATTCAGGGCTTACCAGGCACAACTGCAGAAGTTGG
TATTGGAGGTGGCGAATAAGAACGACTTGATCGCTGTCGAGGAGGGGGCA
GTCCGCGGCTTGTTTTCTAGCAAGGTTGATTTGAGCAAGCGTGGCGACGC
CTTTTCCTTGGCAGATAGGGATAAGATCCTGGGAGAGGTTGAGAGAGAGC
CGATTTTGGTGCACATCGCCCAGGCGGAGAAGGCCCGATTCCCCTATGAG
GTGTGTATGAGAAGTGTGTTCAAACACCTTCTCGAGGCGGCCACTTGTGA
GTTTTTGTTTTGCCAGGACTTTTTCGAGGTGAAGCCAAGAGGGTCTGCAA
GAGGAACACCGGCGGGAGCTGTGGGCAAGGCGGGGGAGACCTTCAATGCC
GTGTTTGCGCGGACGCTGAGCCTGTGTCTCGAGAACTTGGAGAACCACCT
GTTCAATTGCTACGATGCCGTGGGGCTGTTATTGATGATCCGGTTGACCA
CGTCGTTTCGGCAGATCATGCAACAGAGGCGAGTGGGGGTCCTCGATGCA
TTTTTCGATCGGGTAACCATGTTGCTTTGGCCGAGATTCAAGGCCATTTT
CGACGCCAACCTAAAAAGTGTTCGCGTGACAAACGCCGAGAAGCTGGGGG
CAGTTGATTTGCACCCCCATTATGTCTCGAGGAGGTACGCGGAGTTTACG
GCGACTTGTTTAACATTGCATGCCACGGCCACGCCTGGCATGGGGGTGGG
GGGAGGAGGGGAAGGAAGGAGGGGTGGAGGGGTGGGACAATTGTTGCAGA
GTGGGGGGAAGGATATGCTTTTGAATGACGTGAGAACGTTGACGAAGGAG
GTGCTGCTGCTGCTGCAGCGATTGGCGGAGAGGCAGCGGGGCCCCCGAGA
GAGGTATGTATTTTTGATCAACAATTATGACCAGGTATTGAATGTCTTCC
ATGAGCGGCGGGTGGAAGGGGAGGAGAGGAGAACGTTTGAGGAGGCGCTG
GGTCTGCAGCGGGAACTGTTCGTGGAGGAGGAGCTAAAGAGTGCCACGTG
CTATGGAAGATTGATTGCCTTCGTGCGGGAGGCCGAGACAAATGCGGCGG
CTGCGGTGGCAGCAGAGGAGGGAGGCGGGGAGGGAGTATGTGTGGATGCA
CGGCAGGCAGAGGAACTGGTGCGGGAGTTCGCAGCCACCTGGAAAGGCGG
TATAGAAGGGATCAACCACGATGTGATGGCCTACTTTTCAAATTTTCGAA
ACGGAATGGAGATTCTGAAGCAGGTGTTGACGCAGTTGTTACTGTACCAT
ACTCGGTTTCTAGAAGTTTTGAAGAGAGCGTACCCGAGAGGGTTGCCCGG
GTGGGCGAAAGACGTGGTGCAAATGAGTCAGATTCTGTTGGAGATTCGGA
AGTACAGTCGGACGTTTTAG

protein sequence of jgi.p|Nanoce1779_2|527465

>mRNA_4830-protein ID=mRNA_4830-protein|Name=jgi.p|Nanoce1779_2|527465|organism=Nannochloropsis oceanica|type=polypeptide|length=740bp
MRPPSLSSKELSEFDFTGIDQDLARFQQDDFVKQTLSRGVELKGYSTQIE
QELKEVEIESVKEYVQQSSNVVALHGQIQSCDLILARMQEMLLGFQADLG
GISDEIRHLQEESRSMSTKLQNRRDVEAQLQLFLDKMVLPPDMVATLTGK
EVNDAYMEYIINLNGKLAYVSQSTPASDGSSLDLAPQATEAGKELAPKLE
RLRLKAVANARDYFLHRIAELMKPKTHVQMLQRHGLLKYQHLYGFLLECA
PEVAEEVRLNYAETMGKTVFSLFRAYQAQLQKLVLEVANKNDLIAVEEGA
VRGLFSSKVDLSKRGDAFSLADRDKILGEVEREPILVHIAQAEKARFPYE
VCMRSVFKHLLEAATCEFLFCQDFFEVKPRGSARGTPAGAVGKAGETFNA
VFARTLSLCLENLENHLFNCYDAVGLLLMIRLTTSFRQIMQQRRVGVLDA
FFDRVTMLLWPRFKAIFDANLKSVRVTNAEKLGAVDLHPHYVSRRYAEFT
ATCLTLHATATPGMGVGGGGEGRRGGGVGQLLQSGGKDMLLNDVRTLTKE
VLLLLQRLAERQRGPRERYVFLINNYDQVLNVFHERRVEGEERRTFEEAL
GLQRELFVEEELKSATCYGRLIAFVREAETNAAAAVAAEEGGGEGVCVDA
RQAEELVREFAATWKGGIEGINHDVMAYFSNFRNGMEILKQVLTQLLLYH
TRFLEVLKRAYPRGLPGWAKDVVQMSQILLEIRKYSRTF*

mRNA from alignment at scaffold_9:720477..722696+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4830 ID=mRNA_4830|Name=jgi.p|Nanoce1779_2|527465|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp|location=Sequence derived from alignment at scaffold_9:720477..722696+ (Nannochloropsis oceanica)
ATGCGCCCACCCAGTCTGTCCTCCAAGGAGCTGAGCGAGTTTGACTTCAC
CGGCATTGACCAAGACCTGGCGCGTTTCCAGCAAGATGACTTTGTGAAAC
AGACCCTGTCTCGGGGTGTGGAACTGAAAGGCTACTCGACCCAAATCGAA
CAAGAACTCAAAGAAGTCGAAATTGAATCCGTCAAGGAATATGTTCAGCA
ATCTTCGAACGTCGTGGCCTTGCATGGTCAAATCCAATCCTGCGACTTGA
TTTTGGCGCGGATGCAAGAAATGCTGCTGGGGTTTCAGGCAGACTTGGGA
GGGATTAGTGATGAAATCAGACATCTACAAGAAGAATCTCGCTCCATGAG
TACCAAGCTCCAAAACCGTCGTGACGTGGAAGCCCAACTCCAGCTATTCC
TCGACAAGATGGTCCTACCTCCCGATATGGTTGCCACCCTTACCGGCAAG
GAGGTCAATGACGCCTACATGGAATACATCATTAATCTTAACGGGAAACT
CGCCTACGTCTCTCAATCCACCCCTGCCTCCGACGGCTCCTCCCTCGATC
TTGCTCCACAAGCCACAGAGGCCGGAAAGGAATTAGCGCCTAAATTAGAA
AGGCTACGACTCAAGGCAGTGGCGAATGCACGGGACTATTTTTTGCATCG
GATCGCAGAATTGATGAAGCCCAAGACGCATGTACAGATGCTCCAGCGGC
ATGGCTTATTGAAATACCAACATTTGTACGGCTTTCTCTTGGAATGTGCC
CCCGAAGTCGCGGAGGAAGTACGACTGAACTACGCGGAGACAATGGGCAA
AACGGTCTTCAGTTTATTCAGGGCTTACCAGGCACAACTGCAGAAGTTGG
TATTGGAGGTGGCGAATAAGAACGACTTGATCGCTGTCGAGGAGGGGGCA
GTCCGCGGCTTGTTTTCTAGCAAGGTTGATTTGAGCAAGCGTGGCGACGC
CTTTTCCTTGGCAGATAGGGATAAGATCCTGGGAGAGGTTGAGAGAGAGC
CGATTTTGGTGCACATCGCCCAGGCGGAGAAGGCCCGATTCCCCTATGAG
GTGTGTATGAGAAGTGTGTTCAAACACCTTCTCGAGGCGGCCACTTGTGA
GTTTTTGTTTTGCCAGGACTTTTTCGAGGTGAAGCCAAGAGGGTCTGCAA
GAGGAACACCGGCGGGAGCTGTGGGCAAGGCGGGGGAGACCTTCAATGCC
GTGTTTGCGCGGACGCTGAGCCTGTGTCTCGAGAACTTGGAGAACCACCT
GTTCAATTGCTACGATGCCGTGGGGCTGTTATTGATGATCCGGTTGACCA
CGTCGTTTCGGCAGATCATGCAACAGAGGCGAGTGGGGGTCCTCGATGCA
TTTTTCGATCGGGTAACCATGTTGCTTTGGCCGAGATTCAAGGCCATTTT
CGACGCCAACCTAAAAAGTGTTCGCGTGACAAACGCCGAGAAGCTGGGGG
CAGTTGATTTGCACCCCCATTATGTCTCGAGGAGGTACGCGGAGTTTACG
GCGACTTGTTTAACATTGCATGCCACGGCCACGCCTGGCATGGGGGTGGG
GGGAGGAGGGGAAGGAAGGAGGGGTGGAGGGGTGGGACAATTGTTGCAGA
GTGGGGGGAAGGATATGCTTTTGAATGACGTGAGAACGTTGACGAAGGAG
GTGCTGCTGCTGCTGCAGCGATTGGCGGAGAGGCAGCGGGGCCCCCGAGA
GAGGTATGTATTTTTGATCAACAATTATGACCAGGTATTGAATGTCTTCC
ATGAGCGGCGGGTGGAAGGGGAGGAGAGGAGAACGTTTGAGGAGGCGCTG
GGTCTGCAGCGGGAACTGTTCGTGGAGGAGGAGCTAAAGAGTGCCACGTG
CTATGGAAGATTGATTGCCTTCGTGCGGGAGGCCGAGACAAATGCGGCGG
CTGCGGTGGCAGCAGAGGAGGGAGGCGGGGAGGGAGTATGTGTGGATGCA
CGGCAGGCAGAGGAACTGGTGCGGGAGTTCGCAGCCACCTGGAAAGGCGG
TATAGAAGGGATCAACCACGATGTGATGGCCTACTTTTCAAATTTTCGAA
ACGGAATGGAGATTCTGAAGCAGGTGTTGACGCAGTTGTTACTGTACCAT
ACTCGGTTTCTAGAAGTTTTGAAGAGAGCGTACCCGAGAGGGTTGCCCGG
GTGGGCGAAAGACGTGGTGCAAATGAGTCAGATTCTGTTGGAGATTCGGA
AGTACAGTCGGACGTTTTAG

Coding sequence (CDS) from alignment at scaffold_9:720477..722696+

>mRNA_4830 ID=mRNA_4830|Name=jgi.p|Nanoce1779_2|527465|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_9:720477..722696+ (Nannochloropsis oceanica)
ATGCGCCCACCCAGTCTGTCCTCCAAGGAGCTGAGCGAGTTTGACTTCAC
CGGCATTGACCAAGACCTGGCGCGTTTCCAGCAAGATGACTTTGTGAAAC
AGACCCTGTCTCGGGGTGTGGAACTGAAAGGCTACTCGACCCAAATCGAA
CAAGAACTCAAAGAAGTCGAAATTGAATCCGTCAAGGAATATGTTCAGCA
ATCTTCGAACGTCGTGGCCTTGCATGGTCAAATCCAATCCTGCGACTTGA
TTTTGGCGCGGATGCAAGAAATGCTGCTGGGGTTTCAGGCAGACTTGGGA
GGGATTAGTGATGAAATCAGACATCTACAAGAAGAATCTCGCTCCATGAG
TACCAAGCTCCAAAACCGTCGTGACGTGGAAGCCCAACTCCAGCTATTCC
TCGACAAGATGGTCCTACCTCCCGATATGGTTGCCACCCTTACCGGCAAG
GAGGTCAATGACGCCTACATGGAATACATCATTAATCTTAACGGGAAACT
CGCCTACGTCTCTCAATCCACCCCTGCCTCCGACGGCTCCTCCCTCGATC
TTGCTCCACAAGCCACAGAGGCCGGAAAGGAATTAGCGCCTAAATTAGAA
AGGCTACGACTCAAGGCAGTGGCGAATGCACGGGACTATTTTTTGCATCG
GATCGCAGAATTGATGAAGCCCAAGACGCATGTACAGATGCTCCAGCGGC
ATGGCTTATTGAAATACCAACATTTGTACGGCTTTCTCTTGGAATGTGCC
CCCGAAGTCGCGGAGGAAGTACGACTGAACTACGCGGAGACAATGGGCAA
AACGGTCTTCAGTTTATTCAGGGCTTACCAGGCACAACTGCAGAAGTTGG
TATTGGAGGTGGCGAATAAGAACGACTTGATCGCTGTCGAGGAGGGGGCA
GTCCGCGGCTTGTTTTCTAGCAAGGTTGATTTGAGCAAGCGTGGCGACGC
CTTTTCCTTGGCAGATAGGGATAAGATCCTGGGAGAGGTTGAGAGAGAGC
CGATTTTGGTGCACATCGCCCAGGCGGAGAAGGCCCGATTCCCCTATGAG
GTGTGTATGAGAAGTGTGTTCAAACACCTTCTCGAGGCGGCCACTTGTGA
GTTTTTGTTTTGCCAGGACTTTTTCGAGGTGAAGCCAAGAGGGTCTGCAA
GAGGAACACCGGCGGGAGCTGTGGGCAAGGCGGGGGAGACCTTCAATGCC
GTGTTTGCGCGGACGCTGAGCCTGTGTCTCGAGAACTTGGAGAACCACCT
GTTCAATTGCTACGATGCCGTGGGGCTGTTATTGATGATCCGGTTGACCA
CGTCGTTTCGGCAGATCATGCAACAGAGGCGAGTGGGGGTCCTCGATGCA
TTTTTCGATCGGGTAACCATGTTGCTTTGGCCGAGATTCAAGGCCATTTT
CGACGCCAACCTAAAAAGTGTTCGCGTGACAAACGCCGAGAAGCTGGGGG
CAGTTGATTTGCACCCCCATTATGTCTCGAGGAGGTACGCGGAGTTTACG
GCGACTTGTTTAACATTGCATGCCACGGCCACGCCTGGCATGGGGGTGGG
GGGAGGAGGGGAAGGAAGGAGGGGTGGAGGGGTGGGACAATTGTTGCAGA
GTGGGGGGAAGGATATGCTTTTGAATGACGTGAGAACGTTGACGAAGGAG
GTGCTGCTGCTGCTGCAGCGATTGGCGGAGAGGCAGCGGGGCCCCCGAGA
GAGGTATGTATTTTTGATCAACAATTATGACCAGGTATTGAATGTCTTCC
ATGAGCGGCGGGTGGAAGGGGAGGAGAGGAGAACGTTTGAGGAGGCGCTG
GGTCTGCAGCGGGAACTGTTCGTGGAGGAGGAGCTAAAGAGTGCCACGTG
CTATGGAAGATTGATTGCCTTCGTGCGGGAGGCCGAGACAAATGCGGCGG
CTGCGGTGGCAGCAGAGGAGGGAGGCGGGGAGGGAGTATGTGTGGATGCA
CGGCAGGCAGAGGAACTGGTGCGGGAGTTCGCAGCCACCTGGAAAGGCGG
TATAGAAGGGATCAACCACGATGTGATGGCCTACTTTTCAAATTTTCGAA
ACGGAATGGAGATTCTGAAGCAGGTGTTGACGCAGTTGTTACTGTACCAT
ACTCGGTTTCTAGAAGTTTTGAAGAGAGCGTACCCGAGAGGGTTGCCCGG
GTGGGCGAAAGACGTGGTGCAAATGAGTCAGATTCTGTTGGAGATTCGGA
AGTACAGTCGGACGTTTTAG

Synonyms

Publications