jgi.p|Nanoce1779_2|243367, mRNA_483 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|243367
Unique NamemRNA_483
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length987
Alignment locationscaffold_3:1172550..1173536 -

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Properties
Property NameValue
TranscriptId243453
TrackFilteredModels2
ProteinId243367
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1172550..1173536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243367gene_483Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243367mRNA_483-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_483CDS_483Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_483 ID=mRNA_483|Name=jgi.p|Nanoce1779_2|243367|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
GGCGGGTGGGCTGGGTTCTGCGGTAGGTGGAGGGTAGGTGGAAAAACGAT
AGCAAGTTACAAAAAGATTTCCGGTTAAGTTATCGGTGGTATTTGCGTTA
GGGGTCGAATCTCATTAAAAGATGACTAAAGAAATAAGCAAGAATCGTTC
ACAGAGAGTAGGGAGGGAGGGAGGAAGGAAGGAAATAACAGACGGTGACG
GTCGATTGGATGCGAGGGAGTCGATCATTGTTCCTTTTTGGCCAGAGCTG
GGAATTTGTTTGCTGTCCGCTCACTACCAGGCGTACATTTGACGGTTCGA
TGACATGGTACCCGGAAGCCCTGCCTTTCTCTTCGTCGTTGTCGACCATG
CGGCGCTTCTTGCCGCAATCATTATCGCTCTTCGAACAGATTCTCGCCCT
CATCTAATCTATTCCCTTCTCCTCGCAATCCTATCCTGGCTTGCCCGTCT
GCTAGCTCGTTTTCGTCGTACAAGTCTCTCTGTCTGCCTGCCAACACCCA
TACAACGCACAATCACACAAGCCTCCACCCTGCCGAAGAATTCAACTGAT
GAACTGCCCGACCCAGCCGAGCCACCACACCCTTCCCATCGTTCTTTCCT
TCTCTCTCTCTCTTCCCTACTCTCCCTCCCTCCCTCCCTCCCTCCCTCAA
GCTCTCCCTTTCGACGGTTTGTTCTCCGTCTGCTGTCTCCATACCCCTGC
CTCAACCGTTCTTTCCCCCACTCCTTCTTTTCTTCGTATTCATCTTTTAT
CTTCTCTCATACTTCTTTTCTACTCTTCGGGCTTCTCCTTCTGATCCATC
TTCATGTTATCCTTCTTTCTTCTTCCTCTGCCTATCTCACCCCCTCCTCT
CTATATCGTCGTCCTTACATCTACTACTCCTTCGAAGTATGAAAAGAAAT
AATCTTTTAATTCCATATCCTCCCCTCATTCCTCCTGACTCTACTCCTCT
TCCTCCCCCTTCCTCCTCCTCGACAGCACTTAAAAAT
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protein sequence of jgi.p|Nanoce1779_2|243367

>mRNA_483-protein ID=mRNA_483-protein|Name=jgi.p|Nanoce1779_2|243367|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MVPGSPAFLFVVVDHAALLAAIIIALRTDSRPHLIYSLLLAILSWLARLL
ARFRRTSLSVCLPTPIQRTITQASTLPKNSTDELPDPAEPPHPSHRSFLL
SLSSLLSLPPSLPPSSSPFRRFVLRLLSPYPCLNRSFPHSFFSSYSSFIF
SHTSFLLFGLLLLIHLHVILLSSSSAYLTPSSLYRRPYIYYSFEV*
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mRNA from alignment at scaffold_3:1172550..1173536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_483 ID=mRNA_483|Name=jgi.p|Nanoce1779_2|243367|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_3:1172550..1173536- (Nannochloropsis oceanica)
GGCGGGTGGGCTGGGTTCTGCGGTAGGTGGAGGGTAGGTGGAAAAACGAT
AGCAAGTTACAAAAAGATTTCCGGTTAAGTTATCGGTGGTATTTGCGTTA
GGGGTCGAATCTCATTAAAAGATGACTAAAGAAATAAGCAAGAATCGTTC
ACAGAGAGTAGGGAGGGAGGGAGGAAGGAAGGAAATAACAGACGGTGACG
GTCGATTGGATGCGAGGGAGTCGATCATTGTTCCTTTTTGGCCAGAGCTG
GGAATTTGTTTGCTGTCCGCTCACTACCAGGCGTACATTTGACGGTTCGA
TGACATGGTACCCGGAAGCCCTGCCTTTCTCTTCGTCGTTGTCGACCATG
CGGCGCTTCTTGCCGCAATCATTATCGCTCTTCGAACAGATTCTCGCCCT
CATCTAATCTATTCCCTTCTCCTCGCAATCCTATCCTGGCTTGCCCGTCT
GCTAGCTCGTTTTCGTCGTACAAGTCTCTCTGTCTGCCTGCCAACACCCA
TACAACGCACAATCACACAAGCCTCCACCCTGCCGAAGAATTCAACTGAT
GAACTGCCCGACCCAGCCGAGCCACCACACCCTTCCCATCGTTCTTTCCT
TCTCTCTCTCTCTTCCCTACTCTCCCTCCCTCCCTCCCTCCCTCCCTCAA
GCTCTCCCTTTCGACGGTTTGTTCTCCGTCTGCTGTCTCCATACCCCTGC
CTCAACCGTTCTTTCCCCCACTCCTTCTTTTCTTCGTATTCATCTTTTAT
CTTCTCTCATACTTCTTTTCTACTCTTCGGGCTTCTCCTTCTGATCCATC
TTCATGTTATCCTTCTTTCTTCTTCCTCTGCCTATCTCACCCCCTCCTCT
CTATATCGTCGTCCTTACATCTACTACTCCTTCGAAGTATGAAAAGAAAT
AATCTTTTAATTCCATATCCTCCCCTCATTCCTCCTGACTCTACTCCTCT
TCCTCCCCCTTCCTCCTCCTCGACAGCACTTAAAAAT
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Coding sequence (CDS) from alignment at scaffold_3:1172550..1173536-

>mRNA_483 ID=mRNA_483|Name=jgi.p|Nanoce1779_2|243367|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_3:1172550..1173536- (Nannochloropsis oceanica)
ATGGTACCCGGAAGCCCTGCCTTTCTCTTCGTCGTTGTCGACCATGCGGC
GCTTCTTGCCGCAATCATTATCGCTCTTCGAACAGATTCTCGCCCTCATC
TAATCTATTCCCTTCTCCTCGCAATCCTATCCTGGCTTGCCCGTCTGCTA
GCTCGTTTTCGTCGTACAAGTCTCTCTGTCTGCCTGCCAACACCCATACA
ACGCACAATCACACAAGCCTCCACCCTGCCGAAGAATTCAACTGATGAAC
TGCCCGACCCAGCCGAGCCACCACACCCTTCCCATCGTTCTTTCCTTCTC
TCTCTCTCTTCCCTACTCTCCCTCCCTCCCTCCCTCCCTCCCTCAAGCTC
TCCCTTTCGACGGTTTGTTCTCCGTCTGCTGTCTCCATACCCCTGCCTCA
ACCGTTCTTTCCCCCACTCCTTCTTTTCTTCGTATTCATCTTTTATCTTC
TCTCATACTTCTTTTCTACTCTTCGGGCTTCTCCTTCTGATCCATCTTCA
TGTTATCCTTCTTTCTTCTTCCTCTGCCTATCTCACCCCCTCCTCTCTAT
ATCGTCGTCCTTACATCTACTACTCCTTCGAAGTATGA
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Synonyms
Publications