jgi.p|Nanoce1779_2|554774, mRNA_4829 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554774
Unique Name	mRNA_4829
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1676
Alignment location	scaffold_9:717698..719571 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554860
Track	FilteredModels2
ProteinId	554774

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:717698..719571 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554774	gene_4829	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554774	mRNA_4829-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4829	CDS_4829	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:717698..719571+
coding sequence from alignment at scaffold_9:717698..719571+

mRNA sequence

>mRNA_4829 ID=mRNA_4829|Name=jgi.p|Nanoce1779_2|554774|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp
GTGATGGGGAGGTTTGCCACGTACTCGCCAAATGCGACGTTCCCCAATTC
TTCCATATTTTCGCAATCCCTGCACCTCTGCACTCAATTCCCACCACCAC
ATACCGTACCAGACACAGCTCCATTATGGCCTCTACAACGCTGCACGTCC
ATGTGGGCCAGTGCGGCAATCAAGTTGGAGAACGATTCTGGTCCTTGGCG
GCTACAGACGCCTCTTCTGGTGCTTCTGCCGTCGACAGCGACGAAGCTGC
AGCTATCCCGTCGGGCTCCCGCCCGCACCCCATGTTTCACGAGGTAGACA
GCAAAGCGGTTGCTGTCTTTGTGGACAGCGAGGCTAAGGTTGTGGATCGC
TTGCGCCAGAATCCATGTCTGTCGGGAGTCATTCGAAAAGACGCGTGCAT
TACCGACAGCTCGGGGCGGGCCAACAATTGGGCCATGGGTTTTACCGCCT
CATGCCAAGAGCTACGGAAAGGCCATGGACTCTTTTATAAAACCGTAAAT
ACTCTTCGAAGGGAGCTGGAGCGGGTAGATCGCTTGCAGAGCGTGGTCAT
ACATCATAGCTTGGCGGGAGGGACGGGATCGGGAGTAGGGTCGGCGCTGC
TGCAGTATTTGCGGGAGGCTTGCCCGGCATTGACTATCACCACCTCCTCC
GTGGGGCCTTTTTCGTCGGGGGACTGTGCGACGCAGTGGTATAATACGGC
GTTCTCCTTGAGTGCATTAACAGAGTATGCAGATGCGGTGCTTTATCGAG
ACAATGACATATCGCTGAGCCATCACCTGATGACCTCTGCAGCGGCTTCT
CATGGAAAGGGCAACGGCAGCAGGATGCCCGCCGGATGGGGCCACGCAGC
CGCTATAGCAACGGCGTCGATGGGCACAATAAATGATAGCTTGGCCACGG
ATCTCGCTTGTGTCTTCTTTCCTACCATTACTTCTTCCTCTCTCTCCTCC
TCGTCTTTTATGGGCTGCTACCAGCCATGGGACGCCCGGCAACTGAGTCG
CAGCTGCTGTCCCTTCACCTATGCTAAGTTTGTGGACGTTCGTTCGTCTT
GGTCCATGTCGTCCTCCTTACCTTCGCCGTCATCATCTTGCAGAGCAGCA
GCGAAATCGGGTCAACATCAATTGGTGGCAAGAGGAGGAGAAGAGGAAGG
AAGCCGGGGATGGGGGGAGGACTGGTCAAGCCTAGGGCGGAAGCTGGTGG
CCACATTACCTCGTAAGGATTTAAAGGGGAGACCGAATGTGACGATTGCT
GCTCAAACCATAGTGCGGGGAATGATTGCTCCTCCTTTTGATTCAGCTCT
GGCGACGCTCCTCCATCAAGACCTCCCCCGCGCCCTCCTCCTCGCCCCCT
GGCGTCAGCAACACCAATCCCAGCCAGTGGAAACCACCTACTCCCTCGAT
TGCCCTCCTACTTCCTCCTTCCCCCACTCCTCTGGCTCAAGAGGCTTGGC
CGTCTGTGCCAATCGCACCTACATGGGTAGCACTATTGGCAAAGTATTAA
AAAGAGCAGAGGAGATGTCGACGCATGGTGCCTACCTTCACTGGTACAGC
CGCCATGGAATTGAAGAAGCAGATTTTGCCGTTGCCTTTGAACAGCTCCG
GAGAATGAAGGAAGAGTACGAGGAATGGGGGAGGGGCGCAGAGCAGGGTA
GGAGGCAGGGAGCGATTATAGGTTGA

protein sequence of jgi.p|Nanoce1779_2|554774

>mRNA_4829-protein ID=mRNA_4829-protein|Name=jgi.p|Nanoce1779_2|554774|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MASTTLHVHVGQCGNQVGERFWSLAATDASSGASAVDSDEAAAIPSGSRP
HPMFHEVDSKAVAVFVDSEAKVVDRLRQNPCLSGVIRKDACITDSSGRAN
NWAMGFTASCQELRKGHGLFYKTVNTLRRELERVDRLQSVVIHHSLAGGT
GSGVGSALLQYLREACPALTITTSSVGPFSSGDCATQWYNTAFSLSALTE
YADAVLYRDNDISLSHHLMTSAAASHGKGNGSRMPAGWGHAAAIATASMG
TINDSLATDLACVFFPTITSSSLSSSSFMGCYQPWDARQLSRSCCPFTYA
KFVDVRSSWSMSSSLPSPSSSCRAAAKSGQHQLVARGGEEEGSRGWGEDW
SSLGRKLVATLPRKDLKGRPNVTIAAQTIVRGMIAPPFDSALATLLHQDL
PRALLLAPWRQQHQSQPVETTYSLDCPPTSSFPHSSGSRGLAVCANRTYM
GSTIGKVLKRAEEMSTHGAYLHWYSRHGIEEADFAVAFEQLRRMKEEYEE
WGRGAEQGRRQGAIIG*

mRNA from alignment at scaffold_9:717698..719571+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4829 ID=mRNA_4829|Name=jgi.p|Nanoce1779_2|554774|organism=Nannochloropsis oceanica|type=mRNA|length=1874bp|location=Sequence derived from alignment at scaffold_9:717698..719571+ (Nannochloropsis oceanica)
GTGATGGGGAGGTTTGCCACGTACTCGCCAAATGCGACGTTCCCCAATTC
TTCCATATTTTCGCAATCCCTGCACCTCTGCACTCAATTCCCACCACCAC
ATACCGTACCAGACACAGCTCCATTATGGCCTCTACAACGCTGCACGTCC
ATGTGGGCCAGTGCGGCAATCAAGTTGGAGAACGATTCTGGTCCTTGGCG
GCTACAGACGCCTCTTCTGGTGCTTCTGCCGTCGACAGCGACGAAGCTGC
AGCTATCCCGTCGGGCTCCCGCCCGCACCCCATGTTTCACGAGGTAGACA
GCAAAGCGGTTGCTGTCTTTGTGGACAGCGAGGCTAAGGTTGTGGATCGC
TTGCGCCAGAATCCATGTCTGTCGGGAGTCATTCGAAAAGACGCGTGCAT
TACCGACAGCTCGGGGCGGGCCAACAATTGGGCCATGGGTTTTACCGCCT
CATGCCAAGAGCTACGGAAAGGCCATGGACTCTTTTATAAAACCGTAAAT
ACTCTTCGAAGGGAGCTGGAGCGGGTAGATCGCTTGCAGAGCGTGGTCAT
ACATCATAGCTTGGCGGGAGGGACGGGATCGGGAGTAGGGTCGGCGCTGC
TGCAGTATTTGCGGGAGGCTTGCCCGGCATTGACTATCACCACCTCCTCC
GTGGGGCCTTTTTCGTCGGGGGACTGTGCGACGCAGTGGTATAATACGGC
GTTCTCCTTGAGTGCATTAACAGAGTATGCAGATGCGGTGCTTTATCGAG
ACAATGACATATCGCTGAGCCATCACCTGATGACCTCTGCAGCGGCTTCT
CATGGAAAGGGCAACGGCAGCAGGATGCCCGCCGGATGGGGCCACGCAGC
CGCTATAGCAACGGCGTCGATGGGCACAATAAATGATAGCTTGGCCACGG
ATCTCGCTTGTGTCTTCTTTCCTACCATTACTTCTTCCTCTCTCTCCTCC
TCGTCTTTTATGGGCTGCTACCAGCCATGGGACGCCCGGCAACTGAGTCG
CAGCTGCTGTCCCTTCACCTATGCTAAGTTTGTGGACGTTCGTTCGTCTT
GGTCCATGTCGTCCTCCTTACCTTCGCCGTCATCATCTTGCAGAGCAGCA
GCGAAATCGGGTCAACATCAATTGGTGGCAAGAGGAGGAGAAGAGGAAGG
AAGCCGGGGATGGGGGGAGGACTGGTCAAGCCTAGGGCGGAAGCTGGTGG
CCACATTACCTCGTAAGGATTTAAAGGGGAGACCGAATGTGACGATTGCT
GCTCAAACCATAGTGCGGGGAATGAGTCCTGAGGCGGTGCCCTCGCCTGC
AGCTGTGTCGACATGGGAAGAAGCCTCGACCTTGCCGTCTCTGAAACGAG
GAGGAGGAGGACGGGGAGGGAAAGGGGGACCGGGAAAAGGAAGCAGAAAC
AGGAGCCGGGGGTTATGGGCCGCAGCTGTGACATGGGAGGGAAGGAAGGT
AAATCCATATGTACCTGGAGCAGTTGCTCCTCCTTTTGATTCAGCTCTGG
CGACGCTCCTCCATCAAGACCTCCCCCGCGCCCTCCTCCTCGCCCCCTGG
CGTCAGCAACACCAATCCCAGCCAGTGGAAACCACCTACTCCCTCGATTG
CCCTCCTACTTCCTCCTTCCCCCACTCCTCTGGCTCAAGAGGCTTGGCCG
TCTGTGCCAATCGCACCTACATGGGTAGCACTATTGGCAAAGTATTAAAA
AGAGCAGAGGAGATGTCGACGCATGGTGCCTACCTTCACTGGTACAGCCG
CCATGGAATTGAAGAAGCAGATTTTGCCGTTGCCTTTGAACAGCTCCGGA
GAATGAAGGAAGAGTACGAGGAATGGGGGAGGGGCGCAGAGCAGGGTAGG
AGGCAGGGAGCGATTATAGGTTGA

Coding sequence (CDS) from alignment at scaffold_9:717698..719571+

>mRNA_4829 ID=mRNA_4829|Name=jgi.p|Nanoce1779_2|554774|organism=Nannochloropsis oceanica|type=CDS|length=3102bp|location=Sequence derived from alignment at scaffold_9:717698..719571+ (Nannochloropsis oceanica)
ATGGCCTCTACAACGCTGCACGTCCATGTGGGCCAGTGCGGCAATCAAGT
TGGAGAACGATTCTGGTCCTTGGCGGCTACAGACGCCTCTTCTGGTGCTT
CTGCCGTCGACAGCGACGAAGCTGCAGCTATCCCGTCGGGCTCCCGCCCG
CACCCCATGTTTCACGAGGTAGACAGCAAAGCGGTTGCTGTCTTTGTGGA
CAGCGAGGCTAAGGTTGTGGATCGCTTGCGCCAGAATCCATGTCTGTCGG
GAGTCATTCGAAAAGACGCGTGCATTACCGACAGCTCGGGGCGGGCCAAC
AATTGGGCCATGGGTTTTACCGCCTCATGCCAAGAGCTACGGAAAGGCCA
TGGACTCTTTTATAAAACCGTAAATACTCTTCGAAGGGAGCTGGAGCGGG
TAGATCGCTTGCAGAGCGTGGTCATACATCATAGCTTGGCGGGAGGGACG
GGATCGGGAGTAGGGTCGGCGCTGCTGCAGTATTTGCGGGAGGCTTGCCC
GGCATTGACTATCACCACCTCCTCCGTGGGGCCTTTTTCGTCGGGGGACT
GTGCGACGCAGTGGTATAATACGGCGTTCTCCTTGAGTGCATTAACAGAG
TATGCAGATGCGGTGCTTTATCGAGACAATGACATATCGCTGAGCCATCA
CCTGATGACCTCTGCAGCGGCTTCTCATGGAAAGGGCAACGGCAGCAGGA
TGCCCGCCGGATGGGGCCACGCAGCCGCTATAGCAACGGCGTCGATGGGC
ACAATAAATGATAGCTTGGCCACGGATCTCGCTTGTGTCTTCTTTCCTAC
CATTACTTCTTCCTCTCTCTCCTCCTCGTCTTTTATGGGCTGCTACCAGC
CATGGGACGCCCGGCAACTGAGTCGCAGCTGCTGTCCCTTCACCTATGCT
AAGTTTGTGGACGTTCGTTCGTCTTGGTCCATGTCGTCCTCCTTACCTTC
GCCGTCATCATCTTGCAGAGCAGCAGCGAAATCGGGTCAACATCAATTGG
TGGCAAGAGGAGGAGAAGAGGAAGGAAGCCGGGGATGGGGGGAGGACTGG
TCAAGCCTAGGGCGGAAGCTGGTGGCCACATTACCTCGTAAGGATTTAAA
GGGGAGACCGAATGTGACGATTGCTGCTCAAACCATAGTGCGGGGAATGA
TTGCTCCTCCTTTTGATTCAGCTCTGGCGACGCTCCTCCATCAAGACCTC
CCCCGCGCCCTCCTCCTCGCCCCCTGGCGTCAGCAACACCAATCCCAGCC
AGTGGAAACCACCTACTCCCTCGATTGCCCTCCTACTTCCTCCTTCCCCC
ACTCCTCTGGCTCAAGAGGCTTGGCCGTCTGTGCCAATCGCACCTACATG
GGTAGCACTATTGGCAAAGTATTAAAAAGAGCAGAGGAGATGTCGACGCA
TGGTGCCTACCTTCACTGGTACAGCCGCCATGGAATTGAAGAAGCAGATT
TTGCCGTTGCCTTTGAACAGCTCCGGAGAATGAAGGAAGAGTACGAGGAA
TGGGGGAGGGGCGCAGAGCAGGGTAGGAGGCAGGGAGCGATTATAGGTTG
AATGGCCTCTACAACGCTGCACGTCCATGTGGGCCAGTGCGGCAATCAAG
TTGGAGAACGATTCTGGTCCTTGGCGGCTACAGACGCCTCTTCTGGTGCT
TCTGCCGTCGACAGCGACGAAGCTGCAGCTATCCCGTCGGGCTCCCGCCC
GCACCCCATGTTTCACGAGGTAGACAGCAAAGCGGTTGCTGTCTTTGTGG
ACAGCGAGGCTAAGGTTGTGGATCGCTTGCGCCAGAATCCATGTCTGTCG
GGAGTCATTCGAAAAGACGCGTGCATTACCGACAGCTCGGGGCGGGCCAA
CAATTGGGCCATGGGTTTTACCGCCTCATGCCAAGAGCTACGGAAAGGCC
ATGGACTCTTTTATAAAACCGTAAATACTCTTCGAAGGGAGCTGGAGCGG
GTAGATCGCTTGCAGAGCGTGGTCATACATCATAGCTTGGCGGGAGGGAC
GGGATCGGGAGTAGGGTCGGCGCTGCTGCAGTATTTGCGGGAGGCTTGCC
CGGCATTGACTATCACCACCTCCTCCGTGGGGCCTTTTTCGTCGGGGGAC
TGTGCGACGCAGTGGTATAATACGGCGTTCTCCTTGAGTGCATTAACAGA
GTATGCAGATGCGGTGCTTTATCGAGACAATGACATATCGCTGAGCCATC
ACCTGATGACCTCTGCAGCGGCTTCTCATGGAAAGGGCAACGGCAGCAGG
ATGCCCGCCGGATGGGGCCACGCAGCCGCTATAGCAACGGCGTCGATGGG
CACAATAAATGATAGCTTGGCCACGGATCTCGCTTGTGTCTTCTTTCCTA
CCATTACTTCTTCCTCTCTCTCCTCCTCGTCTTTTATGGGCTGCTACCAG
CCATGGGACGCCCGGCAACTGAGTCGCAGCTGCTGTCCCTTCACCTATGC
TAAGTTTGTGGACGTTCGTTCGTCTTGGTCCATGTCGTCCTCCTTACCTT
CGCCGTCATCATCTTGCAGAGCAGCAGCGAAATCGGGTCAACATCAATTG
GTGGCAAGAGGAGGAGAAGAGGAAGGAAGCCGGGGATGGGGGGAGGACTG
GTCAAGCCTAGGGCGGAAGCTGGTGGCCACATTACCTCGTAAGGATTTAA
AGGGGAGACCGAATGTGACGATTGCTGCTCAAACCATAGTGCGGGGAATG
ATTGCTCCTCCTTTTGATTCAGCTCTGGCGACGCTCCTCCATCAAGACCT
CCCCCGCGCCCTCCTCCTCGCCCCCTGGCGTCAGCAACACCAATCCCAGC
CAGTGGAAACCACCTACTCCCTCGATTGCCCTCCTACTTCCTCCTTCCCC
CACTCCTCTGGCTCAAGAGGCTTGGCCGTCTGTGCCAATCGCACCTACAT
GGGTAGCACTATTGGCAAAGTATTAAAAAGAGCAGAGGAGATGTCGACGC
ATGGTGCCTACCTTCACTGGTACAGCCGCCATGGAATTGAAGAAGCAGAT
TTTGCCGTTGCCTTTGAACAGCTCCGGAGAATGAAGGAAGAGTACGAGGA
ATGGGGGAGGGGCGCAGAGCAGGGTAGGAGGCAGGGAGCGATTATAGGTT
GA

Synonyms

Publications