jgi.p|Nanoce1779_2|630038, mRNA_4828 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630038
Unique NamemRNA_4828
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1816
Alignment locationscaffold_9:714802..717318 -

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Properties
Property NameValue
TranscriptId630124
TrackFilteredModels2
ProteinId630038
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:714802..717318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630038gene_4828Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630038mRNA_4828-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4828CDS_4828Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4828 ID=mRNA_4828|Name=jgi.p|Nanoce1779_2|630038|organism=Nannochloropsis oceanica|type=mRNA|length=1816bp
ATGGAAGACCTGAGCACCTTTCCCACAGTTTTCAACACAACGTTTGCTGC
ACGGCAGGGCGATAGAACTGTGGATGAGATCTTGCATATCCGTCCTACCC
TCTTTGTAAACTATGACGCCTTCGGCAATTTTACCACGCCTTCTAGTGGC
AGCACTCAAATATATAAAGTGAGCGTGTTGAACGAGGGTCCAGGGGACGT
GACACAGCTTGCGATCAAGATTGAGGACTTCAACATTTCTTCCTCCTTCT
GGGGCTTAAACACCTTGGACAGCAATGAAACCTACCAGTATCTGCCCAAG
TACCGCGCACCCCTTCGCCAAGGCGATAAATGGATATTTGGTTTCATTCA
GAACACGAACCGGCCAAGCTTTGCCGAGGTAGAACCTCTTTACGGGCAAA
CCGGCGACGGACGATTTTTTAACTTTACCTCTATTATTCCCTCCCCTCCA
AACCCTGATGGGACCGATGCGGTGCTGGTGGAGGAAGATGTGAAGGAGAG
CTACTGGAGGGACCAGCGCTACGTGATTTGGAGTGGCCGCGTGACGAACA
TGGGTTCTTATCCTTTGAGCGCCGTGGGCGTGGATGTGCAAAACATCACT
TCGACTACTGGCACGTGGCAGTTGGTGTATGATCCTGCGACCAACGCTAC
ATACCTGCCCTTGCGTGGCGGTTTCTTGCATCCGAACGAAAGCCAGCGCT
TCGGGTTTATCATGCCCGTGGTCGAGGGACGACCGAATGTGAGCCTCAGC
TATGTCACCACACCAAATGCTTTGTACAACCTCACGGCGCCAAACGTCTT
TGATGAGGAGAAGCCAAGAGAATTCTTGCCGCGCATGGGAAGCAACGCGA
CCCTGCAGGAGTCCTCTGGGGGCTTGCTTGTTCCTTACCCTCCTACCCGC
GTCCGCCCTGGGCAGCAGCAGCAGGAGGGAATTACCATGTGTTACATGCG
CCTGGGCTAAGGCCAACCAACCCCCGCTGTCACCCTTGACAAGAAGAAAC
GCAAAAAGATGGACCATGAAAACATGCCTGGCTTTCGATTCGTTGTCCCT
TCGGCTCTATTTGTGCGTGGCCCACCGGCCTTTGTATGCGAACGATCGCA
TGCATTCGGCATGGCCTCTGCCTCTCCGTCTCTCTTTTTGTGTGACTCTC
TCTGTGGATGTCTCTTTTCTTTCTTTCTTTCCTCTTGCTCTTTTTGTGTC
TTGATCCCTTTCTCTCTATGTTCCTCTTCATGACATCATTGTACGTCCAC
TTCCTCCCTTCTTCTTCCTCCATTTTTCACCAGAACACTTGATACATTTC
CCCCCTATATCCCTCCTTCCCTCCCTCCATCTCTACTTACAAAAACCACA
TCTTATCGATCACGGTCGACTTAATCGGGATCATCTTATTATCCCAATTC
ACATCTGCGTACATATCCATTTCCTCCTCATCCATCCCCCCCGACAATTC
CGTCCCCGTTTCGCTGGATAACGCCTCGTCCGTTAAAAAGATCTGCGCCC
GTTTCGCCGCCAAATGTGAATAGTACACCGCAGGCACCATGGACACGGCG
CGGGTGCAGCGAGCATAGTTGTGGCAGAGGAAGTACGTGAGCAGCTGCAA
CTCGTCCGGGCCCATCTTAGCTTCGTCACGGAGGACCTGGGGAGTGAGGA
AGGAAGGGAGGGAGGGAGGAAGGGAGGGAGTGAGGGAGGGTGAAAAACCG
CGGATCCCCACGACACAAATCTCAAGCACGTAACAGCGCCCCCCCAGTCA
CCAGCAAGATGCTATCTCTCCGTCCGTCCGTCCCTCCCTCCCTACCCTAT
AATACGAGGGTTTGCT
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protein sequence of jgi.p|Nanoce1779_2|630038

>mRNA_4828-protein ID=mRNA_4828-protein|Name=jgi.p|Nanoce1779_2|630038|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MEDLSTFPTVFNTTFAARQGDRTVDEILHIRPTLFVNYDAFGNFTTPSSG
STQIYKVSVLNEGPGDVTQLAIKIEDFNISSSFWGLNTLDSNETYQYLPK
YRAPLRQGDKWIFGFIQNTNRPSFAEVEPLYGQTGDGRFFNFTSIIPSPP
NPDGTDAVLVEEDVKESYWRDQRYVIWSGRVTNMGSYPLSAVGVDVQNIT
STTGTWQLVYDPATNATYLPLRGGFLHPNESQRFGFIMPVVEGRPNVSLS
YVTTPNALYNLTAPNVFDEEKPREFLPRMGSNATLQESSGGLLVPYPPTR
VRPGQQQQEGITMCYMRLG*
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mRNA from alignment at scaffold_9:714802..717318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4828 ID=mRNA_4828|Name=jgi.p|Nanoce1779_2|630038|organism=Nannochloropsis oceanica|type=mRNA|length=2517bp|location=Sequence derived from alignment at scaffold_9:714802..717318- (Nannochloropsis oceanica)
ATGGAAGACCTGAGCACCTTTCCCACAGTTTTCAACACAACGTTTGCTGC
ACGGCAGGGCGATAGAACTGTGGATGAGATCTTGCATATCCGTCCTACCC
TCTTTGTAAACTATGACGCCTTCGGCAATTTTACCACGCCTTCTAGTGGC
AGCACTCAAATATATAAAGTGAGCGTGTTGAACGAGGGTCCAGGGGACGT
GACACAGCTTGCGATCAAGATTGAGGACTTCAACATTTCTTCCTCCTTCT
GGGGCTTAAACACCTTGGACAGCAATGAAACCTACCAGTATCTGCCCAAG
TACCGCGCACCCCTTCGCCAAGGCGATAAATGGATATTTGGTTTCATTCA
GAACACGAACCGGCCAAGCTTTGCCGAGGTAGAACCTCTTTACGGGCAAA
CCGGCGACGGACGATTTTTTAACTTTACCTCTATTATTCCCTCCCCTCCA
AACCCTGATGGGACCGATGCGGTGCTGGTGGAGGAAGATGTGAAGGAGAG
CTACTGGAGGGACCAGCGCTACGTGATTTGGAGTGGCCGCGTGACGAACA
TGGGTTCTTATCCTTTGAGCGCCGTGGGCGTGGATGTGCAAAACATCACT
TCGACTACTGGCACGTGGCAGTTGGTGTATGATCCTGCGACCAACGCTAC
ATACCTGCCCTTGCGTGGCGGTTTCTTGCATCCGAACGAAAGCCAGCGCT
TCGGGTTTATCATGCCCGTGGTCGAGGGACGACCGAATGTGAGCCTCAGC
TATGTCACCACACCAAATGCTTTGTACAACCTCACGGCGCCAAACGTCTT
TGATGAGGAGAAGCCAAGAGAATTCTTGCCGCGCATGGGAAGCAACGCGA
CCCTGCAGGAGTCCTCTGGGGGCTTGCTTGTTCCTTACCCTCCTACCCGC
GTCCGCCCTGGGCAGCAGCAGCAGGAGGGTGAGCATCCAGAGGGCCAACA
CCAGGACCAGTACCAGGACCAGCAGCAGCAGTATCGAGACCAGGGACAGC
GGCAGCAAGGGGAGCAGCGGTTACCGCAAGAACAGCGAGGCGACGTACAG
CAGCAGCAGCAGCAGCAGCCTGAACAACAGACTCGAGATGAAGCGGATAG
AGCAGGTCGAGGCGAGCAGGGAGAGGAGATAGGACAAAACACGACCGCGT
CGGTGAATGAGACACAGGCCACTGAAAAGACTTTCGTCAAGAGTGGGATG
CCGTGTAAGAATAAAGAGATCCACCACCGCCTCCGGGAGATGGGACAGGC
TGGGCGAGAGTAAGCAGGAGGAAAAGGAAGCGGGGAAAAGCATTACTATC
AGCTGAAGCAACAAAACGTAAAAAGGAAAAGGAAGAGGCAATGAGAGGAA
AAAAAAGAAAAAGCGCAAGACCGCCGGTTCACGACAAAAAAGACTCACGG
AAAAATGGCTCACATCCCTGTATCGGAGAAACGCCCGACTTTATCAGAGA
AATATTGCAATTGCAAGCGCCAAACTTTTATCAGAAAAATATCGCATTTG
TTAGCGCCCAACTAAATCAAAAATATAACGCAATTGCAAGAGGGTGAATG
AGAAGCTCCAACAGTGACTGACTACACGAGCGTGCGTGTGTGTGTATTTG
GAACGTCTCTTAATCCGTTCTCTCCACAGGAATTACCATGTGTTACATGC
GCCTGGGCTAAGGCCAACCAACCCCCGCTGTCACCCTTGACAAGAAGAAA
CGCAAAAAGATGGACCATGAAAACATGCCTGGCTTTCGATTCGTTGTCCC
TTCGGCTCTATTTGTGCGTGGCCCACCGGCCTTTGTATGCGAACGATCGC
ATGCATTCGGCATGGCCTCTGCCTCTCCGTCTCTCTTTTTGTGTGACTCT
CTCTGTGGATGTCTCTTTTCTTTCTTTCTTTCCTCTTGCTCTTTTTGTGT
CTTGATCCCTTTCTCTCTATGTTCCTCTTCATGACATCATTGTACGTCCA
CTTCCTCCCTTCTTCTTCCTCCATTTTTCACCAGAACACTTGATACATTT
CCCCCCTATATCCCTCCTTCCCTCCCTCCATCTCTACTTACAAAAACCAC
ATCTTATCGATCACGGTCGACTTAATCGGGATCATCTTATTATCCCAATT
CACATCTGCGTACATATCCATTTCCTCCTCATCCATCCCCCCCGACAATT
CCGTCCCCGTTTCGCTGGATAACGCCTCGTCCGTTAAAAAGATCTGCGCC
CGTTTCGCCGCCAAATGTGAATAGTACACCGCAGGCACCATGGACACGGC
GCGGGTGCAGCGAGCATAGTTGTGGCAGAGGAAGTACGTGAGCAGCTGCA
ACTCGTCCGGGCCCATCTTAGCTTCGTCACGGAGGACCTGGGGAGTGAGG
AAGGAAGGGAGGGAGGGAGGAAGGGAGGGAGTGAGGGAGGGTGAAAAACC
GCGGATCCCCACGACACAAATCTCAAGCACGTAACAGCGCCCCCCCAGTC
ACCAGCAAGATGCTATCTCTCCGTCCGTCCGTCCCTCCCTCCCTACCCTA
TAATACGAGGGTTTGCT
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Coding sequence (CDS) from alignment at scaffold_9:714802..717318-

>mRNA_4828 ID=mRNA_4828|Name=jgi.p|Nanoce1779_2|630038|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_9:714802..717318- (Nannochloropsis oceanica)
GAATTACCATGTGTTACATGCGCCTGGGCTAAATGGAAGACCTGAGCACC
TTTCCCACAGTTTTCAACACAACGTTTGCTGCACGGCAGGGCGATAGAAC
TGTGGATGAGATCTTGCATATCCGTCCTACCCTCTTTGTAAACTATGACG
CCTTCGGCAATTTTACCACGCCTTCTAGTGGCAGCACTCAAATATATAAA
GTGAGCGTGTTGAACGAGGGTCCAGGGGACGTGACACAGCTTGCGATCAA
GATTGAGGACTTCAACATTTCTTCCTCCTTCTGGGGCTTAAACACCTTGG
ACAGCAATGAAACCTACCAGTATCTGCCCAAGTACCGCGCACCCCTTCGC
CAAGGCGATAAATGGATATTTGGTTTCATTCAGAACACGAACCGGCCAAG
CTTTGCCGAGGTAGAACCTCTTTACGGGCAAACCGGCGACGGACGATTTT
TTAACTTTACCTCTATTATTCCCTCCCCTCCAAACCCTGATGGGACCGAT
GCGGTGCTGGTGGAGGAAGATGTGAAGGAGAGCTACTGGAGGGACCAGCG
CTACGTGATTTGGAGTGGCCGCGTGACGAACATGGGTTCTTATCCTTTGA
GCGCCGTGGGCGTGGATGTGCAAAACATCACTTCGACTACTGGCACGTGG
CAGTTGGTGTATGATCCTGCGACCAACGCTACATACCTGCCCTTGCGTGG
CGGTTTCTTGCATCCGAACGAAAGCCAGCGCTTCGGGTTTATCATGCCCG
TGGTCGAGGGACGACCGAATGTGAGCCTCAGCTATGTCACCACACCAAAT
GCTTTGTACAACCTCACGGCGCCAAACGTCTTTGATGAGGAGAAGCCAAG
AGAATTCTTGCCGCGCATGGGAAGCAACGCGACCCTGCAGGAGTCCTCTG
GGGGCTTGCTTGTTCCTTACCCTCCTACCCGCGTCCGCCCTGGGCAGCAG
CAGCAGGAGGGAATTACCATGTGTTACATGCGCCTGGGCTAAATGGAAGA
CCTGAGCACCTTTCCCACAGTTTTCAACACAACGTTTGCTGCACGGCAGG
GCGATAGAACTGTGGATGAGATCTTGCATATCCGTCCTACCCTCTTTGTA
AACTATGACGCCTTCGGCAATTTTACCACGCCTTCTAGTGGCAGCACTCA
AATATATAAAGTGAGCGTGTTGAACGAGGGTCCAGGGGACGTGACACAGC
TTGCGATCAAGATTGAGGACTTCAACATTTCTTCCTCCTTCTGGGGCTTA
AACACCTTGGACAGCAATGAAACCTACCAGTATCTGCCCAAGTACCGCGC
ACCCCTTCGCCAAGGCGATAAATGGATATTTGGTTTCATTCAGAACACGA
ACCGGCCAAGCTTTGCCGAGGTAGAACCTCTTTACGGGCAAACCGGCGAC
GGACGATTTTTTAACTTTACCTCTATTATTCCCTCCCCTCCAAACCCTGA
TGGGACCGATGCGGTGCTGGTGGAGGAAGATGTGAAGGAGAGCTACTGGA
GGGACCAGCGCTACGTGATTTGGAGTGGCCGCGTGACGAACATGGGTTCT
TATCCTTTGAGCGCCGTGGGCGTGGATGTGCAAAACATCACTTCGACTAC
TGGCACGTGGCAGTTGGTGTATGATCCTGCGACCAACGCTACATACCTGC
CCTTGCGTGGCGGTTTCTTGCATCCGAACGAAAGCCAGCGCTTCGGGTTT
ATCATGCCCGTGGTCGAGGGACGACCGAATGTGAGCCTCAGCTATGTCAC
CACACCAAATGCTTTGTACAACCTCACGGCGCCAAACGTCTTTGATGAGG
AGAAGCCAAGAGAATTCTTGCCGCGCATGGGAAGCAACGCGACCCTGCAG
GAGTCCTCTGGGGGCTTGCTTGTTCCTTACCCTCCTACCCGCGTCCGCCC
TGGGCAGCAGCAGCAGGAGG
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Synonyms
Publications