jgi.p|Nanoce1779_2|527641, mRNA_4826 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527641
Unique NamemRNA_4826
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length858
Alignment locationscaffold_9:708530..709387 -

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Properties
Property NameValue
TranscriptId527727
TrackFilteredModels2
ProteinId527641
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:708530..709387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527641gene_4826Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4826CDS_4826Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527641mRNA_4826-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4826 ID=mRNA_4826|Name=jgi.p|Nanoce1779_2|527641|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGCATATTAAGACAGCACATGACAAGGATGTGATTGAATTTCGCAATTA
CAGCGATTCGGCGCTCCAAGCCCGCGTCAAGCGCCATTATCGTGGAATGC
GCCAAAATCAGACCGTGGCGTTCTACGAGAAAATGGAGGAGAAGTATTCA
TTTGCCCCGGGAAAACATCGCGCTGAAATGACAGTTCGCGAGGCCTTTCA
AGCATTGGAGGCGTACGTTGATTCCTCTGATCCTGACATGGACTTGCCCA
ACCTCATTCACATGCTCCAGACTGCGGAGGGTATCCGCAAGGCTGGCCAT
CCCGACTGGATGCAGCTCATCGGCCTCTTACATGACATGGGCAAGATTCA
ATTTTTGTGGGGAAAGAGGGAGGATGGGCAGGAGGGTACGGGGGAGGGAG
CACAGTGGGCCTTGGGAGGGGACACGTGGGTGTTGGGGTGCGCGATCCCC
TCAACGGTGGTATTCCCAGAATTTAACGGCTTGAATCCTGATGAGCAAGA
TGAGCGATATTATGGTAGAAATGGGATGTACGAGGAAGGGTGTGGTATAG
AGCAATTGAAGTGGGCGTGGGGACATGACGAATACATGTACCGCATGCTG
GTCGCGAATGGAGCGACGTTGCCCAAGGAGGGCTTAGCGATGGTGAGGTA
CCATTCCGCCTACCCCTGGCACGATAAGGGGGAATATGGCCAGTTTATGA
AGCCTGGAGACGAGATGTTGATGGCTGCGGTGAAAAAATTTAACGTATTT
GATTTGTATACGAAAGACGAGGGGAAGGGGGTGGATGTCGACAAAGTGTG
GCCGTATTATCAGGGGTTGATTGAGAAGTATCTGGGAACAGGCCCGTTGC
GGTGGTGA
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protein sequence of jgi.p|Nanoce1779_2|527641

>mRNA_4826-protein ID=mRNA_4826-protein|Name=jgi.p|Nanoce1779_2|527641|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MHIKTAHDKDVIEFRNYSDSALQARVKRHYRGMRQNQTVAFYEKMEEKYS
FAPGKHRAEMTVREAFQALEAYVDSSDPDMDLPNLIHMLQTAEGIRKAGH
PDWMQLIGLLHDMGKIQFLWGKREDGQEGTGEGAQWALGGDTWVLGCAIP
STVVFPEFNGLNPDEQDERYYGRNGMYEEGCGIEQLKWAWGHDEYMYRML
VANGATLPKEGLAMVRYHSAYPWHDKGEYGQFMKPGDEMLMAAVKKFNVF
DLYTKDEGKGVDVDKVWPYYQGLIEKYLGTGPLRW*
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mRNA from alignment at scaffold_9:708530..709387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4826 ID=mRNA_4826|Name=jgi.p|Nanoce1779_2|527641|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at scaffold_9:708530..709387- (Nannochloropsis oceanica)
ATGCATATTAAGACAGCACATGACAAGGATGTGATTGAATTTCGCAATTA
CAGCGATTCGGCGCTCCAAGCCCGCGTCAAGCGCCATTATCGTGGAATGC
GCCAAAATCAGACCGTGGCGTTCTACGAGAAAATGGAGGAGAAGTATTCA
TTTGCCCCGGGAAAACATCGCGCTGAAATGACAGTTCGCGAGGCCTTTCA
AGCATTGGAGGCGTACGTTGATTCCTCTGATCCTGACATGGACTTGCCCA
ACCTCATTCACATGCTCCAGACTGCGGAGGGTATCCGCAAGGCTGGCCAT
CCCGACTGGATGCAGCTCATCGGCCTCTTACATGACATGGGCAAGATTCA
ATTTTTGTGGGGAAAGAGGGAGGATGGGCAGGAGGGTACGGGGGAGGGAG
CACAGTGGGCCTTGGGAGGGGACACGTGGGTGTTGGGGTGCGCGATCCCC
TCAACGGTGGTATTCCCAGAATTTAACGGCTTGAATCCTGATGAGCAAGA
TGAGCGATATTATGGTAGAAATGGGATGTACGAGGAAGGGTGTGGTATAG
AGCAATTGAAGTGGGCGTGGGGACATGACGAATACATGTACCGCATGCTG
GTCGCGAATGGAGCGACGTTGCCCAAGGAGGGCTTAGCGATGGTGAGGTA
CCATTCCGCCTACCCCTGGCACGATAAGGGGGAATATGGCCAGTTTATGA
AGCCTGGAGACGAGATGTTGATGGCTGCGGTGAAAAAATTTAACGTATTT
GATTTGTATACGAAAGACGAGGGGAAGGGGGTGGATGTCGACAAAGTGTG
GCCGTATTATCAGGGGTTGATTGAGAAGTATCTGGGAACAGGCCCGTTGC
GGTGGTGA
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Coding sequence (CDS) from alignment at scaffold_9:708530..709387-

>mRNA_4826 ID=mRNA_4826|Name=jgi.p|Nanoce1779_2|527641|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_9:708530..709387- (Nannochloropsis oceanica)
ATGCATATTAAGACAGCACATGACAAGGATGTGATTGAATTTCGCAATTA
CAGCGATTCGGCGCTCCAAGCCCGCGTCAAGCGCCATTATCGTGGAATGC
GCCAAAATCAGACCGTGGCGTTCTACGAGAAAATGGAGGAGAAGTATTCA
TTTGCCCCGGGAAAACATCGCGCTGAAATGACAGTTCGCGAGGCCTTTCA
AGCATTGGAGGCGTACGTTGATTCCTCTGATCCTGACATGGACTTGCCCA
ACCTCATTCACATGCTCCAGACTGCGGAGGGTATCCGCAAGGCTGGCCAT
CCCGACTGGATGCAGCTCATCGGCCTCTTACATGACATGGGCAAGATTCA
ATTTTTGTGGGGAAAGAGGGAGGATGGGCAGGAGGGTACGGGGGAGGGAG
CACAGTGGGCCTTGGGAGGGGACACGTGGGTGTTGGGGTGCGCGATCCCC
TCAACGGTGGTATTCCCAGAATTTAACGGCTTGAATCCTGATGAGCAAGA
TGAGCGATATTATGGTAGAAATGGGATGTACGAGGAAGGGTGTGGTATAG
AGCAATTGAAGTGGGCGTGGGGACATGACGAATACATGTACCGCATGCTG
GTCGCGAATGGAGCGACGTTGCCCAAGGAGGGCTTAGCGATGGTGAGGTA
CCATTCCGCCTACCCCTGGCACGATAAGGGGGAATATGGCCAGTTTATGA
AGCCTGGAGACGAGATGTTGATGGCTGCGGTGAAAAAATTTAACGTATTT
GATTTGTATACGAAAGACGAGGGGAAGGGGGTGGATGTCGACAAAGTGTG
GCCGTATTATCAGGGGTTGATTGAGAAGTATCTGGGAACAGGCCCGTTGC
GGTGGTGA
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Synonyms
Publications