jgi.p|Nanoce1779_2|444175, mRNA_4825 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|444175
Unique NamemRNA_4825
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length812
Alignment locationscaffold_9:707156..707967 +

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Properties
Property NameValue
TranscriptId444261
TrackFilteredModels2
ProteinId444175
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:707156..707967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|444175gene_4825Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|444175mRNA_4825-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4825CDS_4825Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4825 ID=mRNA_4825|Name=jgi.p|Nanoce1779_2|444175|organism=Nannochloropsis oceanica|type=mRNA|length=812bp
GGAGGGAGGGAGGGAGGGAGGGAGGGTGAGTCTCTTTTGACTCTCTGCTT
GCATGTCTGGTGCATTCCCAGTGGTTTCGATTTATAGCTCTAATAAGAGA
GGTGTGGAGTGGAGGGCCCCTCTCCCCCTCCTCTCTTCACTCCCCTCCCT
TGCTCCTTACCTGCTTATTAATTTCCTCTTTTTCCTTCCCTCCCTCCCTT
CTCCAGCAACTGCCCTTCTTGCCCGAGTACTGGTTCCGGCTCGGTGGTCG
ATTTGCTGGTCTGCACAAATTGTGGCGGGACTGGTCACCAGGATACGTCC
TCCCTCCCTCCCTCCTGGCCTCGCTCCACACGACCTTTTCGGAGCCCGGT
GTGCTGGTGAGTGCCATGCAGTATTATCGCGCCAATGTTCCGCCGATGCT
GCAGCGTCTGGTGAGAGGGAAGGTGGAGGGGTGGGCAGGGGGAGAGGGAG
GGACGGAGGGAGGATTTGTAGTTGGGGTGCCCACGTTGGGGCTGGTGGGA
AAGGAGGATGGATGTATTGCTTCAGTGCTCTTTGACGTGGCCATGGGAAG
TGTGGAAGGAGGGGGGCGGCACCACCCACTGTTTTCGAAGGCGGTCCAGG
TGGCGAAGGTGGAAGGAGGGGGGCATTTTGTGCACCAGGAGAGGCCGAAG
GAGGTAAACGCCTTGGTGTTGGCGTGGTTTGAGAGGTTTGGGGAAAACGG
GACGGAGGAGAAATCCAGGAAAGGGGGGGGTGAAGGAGAAATTCTGACAG
AAAATGCAGACAGGTAAAGGTAGGGAGAAGGATAGAAGAAGAAACACATG
CATGTAATGGAA
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protein sequence of jgi.p|Nanoce1779_2|444175

>mRNA_4825-protein ID=mRNA_4825-protein|Name=jgi.p|Nanoce1779_2|444175|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSGAFPVVSIYSSNKRGVEWRAPLPLLSSLPSLAPYLLINFLFFLPSLPS
PATALLARVLVPARWSICWSAQIVAGLVTRIRPPSLPPGLAPHDLFGARC
AGECHAVLSRQCSADAAASGEREGGGVGRGRGRDGGRICSWGAHVGAGGK
GGWMYCFSAL*
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mRNA from alignment at scaffold_9:707156..707967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4825 ID=mRNA_4825|Name=jgi.p|Nanoce1779_2|444175|organism=Nannochloropsis oceanica|type=mRNA|length=812bp|location=Sequence derived from alignment at scaffold_9:707156..707967+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAGGGTGAGTCTCTTTTGACTCTCTGCTT
GCATGTCTGGTGCATTCCCAGTGGTTTCGATTTATAGCTCTAATAAGAGA
GGTGTGGAGTGGAGGGCCCCTCTCCCCCTCCTCTCTTCACTCCCCTCCCT
TGCTCCTTACCTGCTTATTAATTTCCTCTTTTTCCTTCCCTCCCTCCCTT
CTCCAGCAACTGCCCTTCTTGCCCGAGTACTGGTTCCGGCTCGGTGGTCG
ATTTGCTGGTCTGCACAAATTGTGGCGGGACTGGTCACCAGGATACGTCC
TCCCTCCCTCCCTCCTGGCCTCGCTCCACACGACCTTTTCGGAGCCCGGT
GTGCTGGTGAGTGCCATGCAGTATTATCGCGCCAATGTTCCGCCGATGCT
GCAGCGTCTGGTGAGAGGGAAGGTGGAGGGGTGGGCAGGGGGAGAGGGAG
GGACGGAGGGAGGATTTGTAGTTGGGGTGCCCACGTTGGGGCTGGTGGGA
AAGGAGGATGGATGTATTGCTTCAGTGCTCTTTGACGTGGCCATGGGAAG
TGTGGAAGGAGGGGGGCGGCACCACCCACTGTTTTCGAAGGCGGTCCAGG
TGGCGAAGGTGGAAGGAGGGGGGCATTTTGTGCACCAGGAGAGGCCGAAG
GAGGTAAACGCCTTGGTGTTGGCGTGGTTTGAGAGGTTTGGGGAAAACGG
GACGGAGGAGAAATCCAGGAAAGGGGGGGGTGAAGGAGAAATTCTGACAG
AAAATGCAGACAGGTAAAGGTAGGGAGAAGGATAGAAGAAGAAACACATG
CATGTAATGGAA
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Coding sequence (CDS) from alignment at scaffold_9:707156..707967+

>mRNA_4825 ID=mRNA_4825|Name=jgi.p|Nanoce1779_2|444175|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_9:707156..707967+ (Nannochloropsis oceanica)
ATGTCTGGTGCATTCCCAGTGGTTTCGATTTATAGCTCTAATAAGAGAGG
TGTGGAGTGGAGGGCCCCTCTCCCCCTCCTCTCTTCACTCCCCTCCCTTG
CTCCTTACCTGCTTATTAATTTCCTCTTTTTCCTTCCCTCCCTCCCTTCT
CCAGCAACTGCCCTTCTTGCCCGAGTACTGGTTCCGGCTCGGTGGTCGAT
TTGCTGGTCTGCACAAATTGTGGCGGGACTGGTCACCAGGATACGTCCTC
CCTCCCTCCCTCCTGGCCTCGCTCCACACGACCTTTTCGGAGCCCGGTGT
GCTGGTGAGTGCCATGCAGTATTATCGCGCCAATGTTCCGCCGATGCTGC
AGCGTCTGGTGAGAGGGAAGGTGGAGGGGTGGGCAGGGGGAGAGGGAGGG
ACGGAGGGAGGATTTGTAGTTGGGGTGCCCACGTTGGGGCTGGTGGGAAA
GGAGGATGGATGTATTGCTTCAGTGCTCTTTGA
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Synonyms
Publications