jgi.p|Nanoce1779_2|554766, mRNA_4824 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554766
Unique Name	mRNA_4824
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1524
Alignment location	scaffold_9:703950..705660 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554852
Track	FilteredModels2
ProteinId	554766

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:703950..705660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554766	gene_4824	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554766	mRNA_4824-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4824	CDS_4824	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:703950..705660+
coding sequence from alignment at scaffold_9:703950..705660+

mRNA sequence

>mRNA_4824 ID=mRNA_4824|Name=jgi.p|Nanoce1779_2|554766|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
AGCAGGCCGAGTCTGCCAAATCTTAGTGTTGCGTTTGACTTGTGAAAAGG
CAGGCAACCCTCCCAAGTGTGGCTGTCTGGCCCATGCTGAAGGCACAAAG
AGCAGCAGGCTGCGGCGACGCGCAACTCTTCTCTCTGCTGCCATATTGAT
ACGTTCATCCCCGTCTGTCAAGACCGGCACCCTGAACAGTCATACAGCTT
GCTTCCAAGCAGAAGTGCATGCTTTTGTGTGTTTGTGTGCATTGCGTGGC
AGGGGAAGATGCAGACTTAGATGAGCCCTACCATGTATGACCCCCGAAGC
CATGCCATCCGCACCATCACCAACACGTGACGCACGCCCGCTGCTCATTC
CCCAACCCGCACCACTGCCACATCCACAGTCTTGGCTGCACCAACAGCAC
CTGAATCTCCAGTAGCAAGCCCACCACGTGCTGCTTCTGCCGGCGTGGTG
TGGCCTTTTTGTGACTGCTTCAATCCAAGGAGCAATCCCTGTGGGCTCTG
ATAAGTCGCCCTTCCCCTCCGCACCCTTGCTCTCCACAATCACCGGCGCC
CAGACAGCCCGATGGACTGTCTGAAGTGCAAGGCCTCTCTCAAGTCCGTC
ATGGCACGGCCCCGCCCCAAGGCGCTACTGGATGCGCTGGCCGAGACGGG
CATCCAAACCTTGGAAAATGCGCCCGAGTCCCGTCGTGCCGCGATAGCCG
CCTCGACTCAAAGACACTTCCAGGGAGGAGGAGGAGGAGGAAGAGGACAA
CAAGACGGAGGGGAAAAGAGTGAAACAAAAATAAGTGGAAATTATGGTAC
GGGGGGCGCAGCAGGAGTAGGAGGAGCAGGGGCGACTTTAAATATAAAGT
GCCTTAACTGTGCAGAGGAAGGGATTGCGATGAAAGCACGGGCATACATG
GAGGCGCCGCCAATGTCGGTGGTGTTGTGTGCGAATCGTTTGCAAGATCG
TCGGGAGATGGAGGAGGCACTGGTCCATGAGTTGGTGCATGTTTATGATC
ACGCCCTTGTCAAGATGGACCTCACCAATTGCGCCGAGCTTGCCTACAGT
GAGATCCGAGCCGCTCGCGAGGCCGAATGCCATTACACCTCTCAGCTGTG
TTCGTGGTTCAAGAAGCAGTGCGTGAAGAGCACGGCGACCCGGAGCACAG
CCACCTTGTTCCCCGAGGAGGGTGCGAAGTGTGTGATGGGAGTATTTGAG
GCTGCCTTTAAGGACATGGGTCCTGAACAATTGCATGCCGGGTTGACCAC
AGGAGGGGGGGCTGGAGGGGATAAAGGAGGTGGTGCACGAGGAGGGCGGG
AAGGAAGAAGGGAGGGAAGAGGAGGAGAAGGGGGGGGGGAAAGGGAGGGA
GGTAAGGCCCCGATTGGACGTACTCCGACGGCGGCATCGATGAGAGTTTT
GATAGATAATCTACAGACAACTGGCCCTCCCTCCGCCCCTTCCTCCTCCT
CTTTCTCCGCGTTTTCGGGGGTATCAGGAATGGGGCTGGCGGAGACTTTG
GCCACGGCTTTTGGGATTCGATGA

protein sequence of jgi.p|Nanoce1779_2|554766

>mRNA_4824-protein ID=mRNA_4824-protein|Name=jgi.p|Nanoce1779_2|554766|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MDCLKCKASLKSVMARPRPKALLDALAETGIQTLENAPESRRAAIAASTQ
RHFQGGGGGGRGQQDGGEKSETKISGNYGTGGAAGVGGAGATLNIKCLNC
AEEGIAMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALV
KMDLTNCAELAYSEIRAAREAECHYTSQLCSWFKKQCVKSTATRSTATLF
PEEGAKCVMGVFEAAFKDMGPEQLHAGLTTGGGAGGDKGGGARGGREGRR
EGRGGEGGGEREGGKAPIGRTPTAASMRVLIDNLQTTGPPSAPSSSSFSA
FSGVSGMGLAETLATAFGIR*

mRNA from alignment at scaffold_9:703950..705660+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4824 ID=mRNA_4824|Name=jgi.p|Nanoce1779_2|554766|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at scaffold_9:703950..705660+ (Nannochloropsis oceanica)
AGCAGGCCGAGTCTGCCAAATCTTAGTGTTGCGTTTGACTTGTGAAAAGG
CAGGCAACCCTCCCAAGTGTGGCTGTCTGGCCCATGCTGAAGGCACAAAG
AGCAGCAGGCTGCGGCGACGCGCAACTCTTCTCTCTGCTGCCATATTGAT
ACGTTCATCCCCGTCTGTCAAGACCGGCACCCTGAACAGTCATACAGCTT
GCTTCCAAGCAGAAGTGCATGCTTTTGTGTGTTTGTGTGCATTGCGTGGC
AGGGGAAGATGCAGACTTAGATGAGCCCTACCATGTATGACCCCCGAAGC
CATGCCATCCGCACCATCACCAACACGTGACGCACGCCCGCTGCTCATTC
CCCAACCCGCACCACTGCCACATCCACAGTCTTGGCTGCACCAACAGCAC
CTGAATCTCCAGTAGCAAGCCCACCACGTGCTGCTTCTGCCGGCGTGGTG
TGGCCTTTTTGTGACTGCTTCAATCCAAGGAGCAATCCCTGTGGGCTCTG
ATAAGTCGCCCTTCCCCTCCGCACCCTTGCTCTCCACAATCACCGGCGCC
CAGACAGCCCGATGGACTGTCTGAAGTGCAAGGCCTCTCTCAAGTCCGTC
ATGGCACGGCCCCGCCCCAAGGCGCTACTGGATGCGCTGGCCGAGACGGG
CATCCAAACCTTGGAAAATGCGCCCGAGTCCCGTCGTGCCGCGATAGCCG
CCTCGACTCAAAGACACTTCCAGGGAGGAGGAGGAGGAGGAAGAGGACAA
CAAGACGGAGGGGAAAAGAGTGAAACAAAAATAAGTGGAAATTATGGTAC
GGGGGGCGCAGCAGGAGTAGGAGGAGCAGGGGCGACTTTAAATATAAAGT
GCCTTAACTGTGCAGAGGAAGGGATTGCGATGAAAGCACGGGCATACATG
GAGGCGCCGCCAATGTCGGTGGTGTTGTGTGCGAATCGTTTGCAAGATCG
TCGGGAGATGGAGGAGGCACTGGTCCATGAGTTGGTGCATGTTTATGATG
TATGTAGGGTAGTAGGAGCAGGGGAGGGAGGGAGGGAGGGGAGAGGGGAA
AACTGACGAAGGAGGGGAGAGCTGTCGACAAGGAAGTATATGTCCTTTGT
TAATCGGTGGAAGAGGCGTCTGTTACTAGATGTCCCTGATTTTATGCCTG
ATAATTACTCCTCCCTCCCTCCCTTTCTTCCCACAGCACGCCCTTGTCAA
GATGGACCTCACCAATTGCGCCGAGCTTGCCTACAGTGAGATCCGAGCCG
CTCGCGAGGCCGAATGCCATTACACCTCTCAGCTGTGTTCGTGGTTCAAG
AAGCAGTGCGTGAAGAGCACGGCGACCCGGAGCACAGCCACCTTGTTCCC
CGAGGAGGGTGCGAAGTGTGTGATGGGAGTATTTGAGGCTGCCTTTAAGG
ACATGGGTCCTGAACAATTGCATGCCGGGTTGACCACAGGAGGGGGGGCT
GGAGGGGATAAAGGAGGTGGTGCACGAGGAGGGCGGGAAGGAAGAAGGGA
GGGAAGAGGAGGAGAAGGGGGGGGGGAAAGGGAGGGAGGTAAGGCCCCGA
TTGGACGTACTCCGACGGCGGCATCGATGAGAGTTTTGATAGATAATCTA
CAGACAACTGGCCCTCCCTCCGCCCCTTCCTCCTCCTCTTTCTCCGCGTT
TTCGGGGGTATCAGGAATGGGGCTGGCGGAGACTTTGGCCACGGCTTTTG
GGATTCGATGA

Coding sequence (CDS) from alignment at scaffold_9:703950..705660+

>mRNA_4824 ID=mRNA_4824|Name=jgi.p|Nanoce1779_2|554766|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_9:703950..705660+ (Nannochloropsis oceanica)
ATGGACTGTCTGAAGTGCAAGGCCTCTCTCAAGTCCGTCATGGCACGGCC
CCGCCCCAAGGCGCTACTGGATGCGCTGGCCGAGACGGGCATCCAAACCT
TGGAAAATGCGCCCGAGTCCCGTCGTGCCGCGATAGCCGCCTCGACTCAA
AGACACTTCCAGGGAGGAGGAGGAGGAGGAAGAGGACAACAAGACGGAGG
GGAAAAGAGTGAAACAAAAATAAGTGGAAATTATGGTACGGGGGGCGCAG
CAGGAGTAGGAGGAGCAGGGGCGACTTTAAATATAAAGTGCCTTAACTGT
GCAGAGGAAGGGATTGCGATGAAAGCACGGGCATACATGGAGGCGCCGCC
AATGTCGGTGGTGTTGTGTGCGAATCGTTTGCAAGATCGTCGGGAGATGG
AGGAGGCACTGGTCCATGAGTTGGTGCATGTTTATGATCACGCCCTTGTC
AAGATGGACCTCACCAATTGCGCCGAGCTTGCCTACAGTGAGATCCGAGC
CGCTCGCGAGGCCGAATGCCATTACACCTCTCAGCTGTGTTCGTGGTTCA
AGAAGCAGTGCGTGAAGAGCACGGCGACCCGGAGCACAGCCACCTTGTTC
CCCGAGGAGGGTGCGAAGTGTGTGATGGGAGTATTTGAGGCTGCCTTTAA
GGACATGGGTCCTGAACAATTGCATGCCGGGTTGACCACAGGAGGGGGGG
CTGGAGGGGATAAAGGAGGTGGTGCACGAGGAGGGCGGGAAGGAAGAAGG
GAGGGAAGAGGAGGAGAAGGGGGGGGGGAAAGGGAGGGAGGTAAGGCCCC
GATTGGACGTACTCCGACGGCGGCATCGATGAGAGTTTTGATAGATAATC
TACAGACAACTGGCCCTCCCTCCGCCCCTTCCTCCTCCTCTTTCTCCGCG
TTTTCGGGGGTATCAGGAATGGGGCTGGCGGAGACTTTGGCCACGGCTTT
TGGGATTCGATGAATGGACTGTCTGAAGTGCAAGGCCTCTCTCAAGTCCG
TCATGGCACGGCCCCGCCCCAAGGCGCTACTGGATGCGCTGGCCGAGACG
GGCATCCAAACCTTGGAAAATGCGCCCGAGTCCCGTCGTGCCGCGATAGC
CGCCTCGACTCAAAGACACTTCCAGGGAGGAGGAGGAGGAGGAAGAGGAC
AACAAGACGGAGGGGAAAAGAGTGAAACAAAAATAAGTGGAAATTATGGT
ACGGGGGGCGCAGCAGGAGTAGGAGGAGCAGGGGCGACTTTAAATATAAA
GTGCCTTAACTGTGCAGAGGAAGGGATTGCGATGAAAGCACGGGCATACA
TGGAGGCGCCGCCAATGTCGGTGGTGTTGTGTGCGAATCGTTTGCAAGAT
CGTCGGGAGATGGAGGAGGCACTGGTCCATGAGTTGGTGCATGTTTATGA
TCACGCCCTTGTCAAGATGGACCTCACCAATTGCGCCGAGCTTGCCTACA
GTGAGATCCGAGCCGCTCGCGAGGCCGAATGCCATTACACCTCTCAGCTG
TGTTCGTGGTTCAAGAAGCAGTGCGTGAAGAGCACGGCGACCCGGAGCAC
AGCCACCTTGTTCCCCGAGGAGGGTGCGAAGTGTGTGATGGGAGTATTTG
AGGCTGCCTTTAAGGACATGGGTCCTGAACAATTGCATGCCGGGTTGACC
ACAGGAGGGGGGGCTGGAGGGGATAAAGGAGGTGGTGCACGAGGAGGGCG
GGAAGGAAGAAGGGAGGGAAGAGGAGGAGAAGGGGGGGGGGAAAGGGAGG
GAGGTAAGGCCCCGATTGGACGTACTCCGACGGCGGCATCGATGAGAGTT
TTGATAGATAATCTACAGACAACTGGCCCTCCCTCCGCCCCTTCCTCCTC
CTCTTTCTCCGCGTTTTCGGGGGTATCAGGAATGGGGCTGGCGGAGACTT
TGGCCACGGCTTTTGGGATTCGATGA

Synonyms

Publications