jgi.p|Nanoce1779_2|588008, mRNA_4823 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588008
Unique NamemRNA_4823
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length976
Alignment locationscaffold_9:702870..703945 +

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Properties
Property NameValue
TranscriptId588094
TrackFilteredModels2
ProteinId588008
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:702870..703945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588008gene_4823Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588008mRNA_4823-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4823CDS_4823Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4823 ID=mRNA_4823|Name=jgi.p|Nanoce1779_2|588008|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
ACAGTCCCAACATGCCTCAATCTTTACGCCTCATCTATTTCAATTTCGGG
GGTCGAGCGGAAGCCATCCGTTTGGCTTTACACGTTGGATCTGTCGAGTT
TGAAGACATAAGAATAACCGAGAGGGAATTCCGCCAGCAGAAGTCTGAGG
GCAAGTACCCCTTTGGAAGCGTCCCCGTCCTCGAAGTCGACGGTGTCGTC
TATGCACAGTCTGTGGGCATCCTCCGCTATGTCGGTCGGCTCGGTAAGCT
CTACCCAGAAGACCCTCTGGCAGGGCTTGCTATCGATCAAATCGTCGGAG
CAGTGGAAGATATGATCGTCGCTACTGTACCCTACCTCTTCGCTCCTGAA
GCAGACAAACCCTTGATGAAGGAGAAGCTGGAGCAGGAAGTGTACCCACG
GTTTTTCTCGGCGTTTGAAAATTTGTTGAAGGCAGATGGGAAGGGATTTT
TTTATGGGCAGCACTTGACAATTGCCGATTTGGCGGTCTACCCGGTGCTG
CAATGGATAACGACCTCAATTGTTGGTAAGGAGAGCTTGGACCCTTACCC
TCTGCTCAAGGCGTTGTTTGCGACGATTGAGGGGCATGAGAAGGTCAAGG
ACTATTATGACTACGAGAGGCGACGGACCGAGGAAAAAGAAGGGGAAGTG
AGGCCAACAAGCTGAGGTGTGAATAAATGTGAGGGTTTATGTAAGGGAGG
GTAGATGGGGAAGTGAAGTCGGTAGTAGGTTCTGTTCTGGGAATGCCTTG
TAAGAAGAGAACAGGAATAGGAGAAGTGAGCGCGAGTTTTGTGAAATCCT
GATGAGAGGCGAGTGTCATTAGTTTGGTCTTTGGCAAACGGGAAGAGGTT
TGAAAACACCCCCCCACATGGTTGTAGTTAACTCTTGGTCTTGTGCTTGA
CCACGTTCACAAGATTTGCTCTATCTTGTCTGTTTTATTTTCAGTGTACC
CTCAGGGAGGAATATAAATGCTGCAG
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protein sequence of jgi.p|Nanoce1779_2|588008

>mRNA_4823-protein ID=mRNA_4823-protein|Name=jgi.p|Nanoce1779_2|588008|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MPQSLRLIYFNFGGRAEAIRLALHVGSVEFEDIRITEREFRQQKSEGKYP
FGSVPVLEVDGVVYAQSVGILRYVGRLGKLYPEDPLAGLAIDQIVGAVED
MIVATVPYLFAPEADKPLMKEKLEQEVYPRFFSAFENLLKADGKGFFYGQ
HLTIADLAVYPVLQWITTSIVGKESLDPYPLLKALFATIEGHEKVKDYYD
YERRRTEEKEGEVRPTS*
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mRNA from alignment at scaffold_9:702870..703945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4823 ID=mRNA_4823|Name=jgi.p|Nanoce1779_2|588008|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp|location=Sequence derived from alignment at scaffold_9:702870..703945+ (Nannochloropsis oceanica)
ACAGTCCCAACATGCCTCAATCTTTACGCCTCATCTATTTCAATTTCGGG
GGTCGAGCGGAAGCCATCCGTTTGGCTTTACACGTTGGATCTGTCGAGTT
TGAAGACATAAGAATAACCGAGAGGGAATTCCGCCAGCAGAAGTCTGGTA
CGTACGCAAAGATTCTGGTAGTTGTCCGATAAGATTTAACTCATCAAACA
TCCGTTTATCCTCTTTCCACCTTGTCCTCTTCAATAACCCCTCCCAGAGG
GCAAGTACCCCTTTGGAAGCGTCCCCGTCCTCGAAGTCGACGGTGTCGTC
TATGCACAGTCTGTGGGCATCCTCCGCTATGTCGGTCGGCTCGGTAAGCT
CTACCCAGAAGACCCTCTGGCAGGGCTTGCTATCGATCAAATCGTCGGAG
CAGTGGAAGATATGATCGTCGCTACTGTACCCTACCTCTTCGCTCCTGAA
GCAGACAAACCCTTGATGAAGGAGAAGCTGGAGCAGGAAGTGTACCCACG
GTTTTTCTCGGCGTTTGAAAATTTGTTGAAGGCAGATGGGAAGGGATTTT
TTTATGGGCAGCACTTGACAATTGCCGATTTGGCGGTCTACCCGGTGCTG
CAATGGATAACGACCTCAATTGTTGGTAAGGAGAGCTTGGACCCTTACCC
TCTGCTCAAGGCGTTGTTTGCGACGATTGAGGGGCATGAGAAGGTCAAGG
ACTATTATGACTACGAGAGGCGACGGACCGAGGAAAAAGAAGGGGAAGTG
AGGCCAACAAGCTGAGGTGTGAATAAATGTGAGGGTTTATGTAAGGGAGG
GTAGATGGGGAAGTGAAGTCGGTAGTAGGTTCTGTTCTGGGAATGCCTTG
TAAGAAGAGAACAGGAATAGGAGAAGTGAGCGCGAGTTTTGTGAAATCCT
GATGAGAGGCGAGTGTCATTAGTTTGGTCTTTGGCAAACGGGAAGAGGTT
TGAAAACACCCCCCCACATGGTTGTAGTTAACTCTTGGTCTTGTGCTTGA
CCACGTTCACAAGATTTGCTCTATCTTGTCTGTTTTATTTTCAGTGTACC
CTCAGGGAGGAATATAAATGCTGCAG
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Coding sequence (CDS) from alignment at scaffold_9:702870..703945+

>mRNA_4823 ID=mRNA_4823|Name=jgi.p|Nanoce1779_2|588008|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_9:702870..703945+ (Nannochloropsis oceanica)
ATGCCTCAATCTTTACGCCTCATCTATTTCAATTTCGGGGGTCGAGCGGA
AGCCATCCGTTTGGCTTTACACGTTGGATCTGTCGAGTTTGAAGACATAA
GAATAACCGAGAGGGAATTCCGCCAGCAGAAGTCTGAGGGCAAGTACCCC
TTTGGAAGCGTCCCCGTCCTCGAAGTCGACGGTGTCGTCTATGCACAGTC
TGTGGGCATCCTCCGCTATGTCGGTCGGCTCGGTAAGCTCTACCCAGAAG
ACCCTCTGGCAGGGCTTGCTATCGATCAAATCGTCGGAGCAGTGGAAGAT
ATGATCGTCGCTACTGTACCCTACCTCTTCGCTCCTGAAGCAGACAAACC
CTTGATGAAGGAGAAGCTGGAGCAGGAAGTGTACCCACGGTTTTTCTCGG
CGTTTGAAAATTTGTTGAAGGCAGATGGGAAGGGATTTTTTTATGGGCAG
CACTTGACAATTGCCGATTTGGCGGTCTACCCGGTGCTGCAATGGATAAC
GACCTCAATTGTTGGTAAGGAGAGCTTGGACCCTTACCCTCTGCTCAAGG
CGTTGTTTGCGACGATTGAGGGGCATGAGAAGGTCAAGGACTATTATGAC
TACGAGAGGCGACGGACCGAGGAAAAAGAAGGGGAAGTGAGGCCAACAAG
CTGAATGCCTCAATCTTTACGCCTCATCTATTTCAATTTCGGGGGTCGAG
CGGAAGCCATCCGTTTGGCTTTACACGTTGGATCTGTCGAGTTTGAAGAC
ATAAGAATAACCGAGAGGGAATTCCGCCAGCAGAAGTCTGAGGGCAAGTA
CCCCTTTGGAAGCGTCCCCGTCCTCGAAGTCGACGGTGTCGTCTATGCAC
AGTCTGTGGGCATCCTCCGCTATGTCGGTCGGCTCGGTAAGCTCTACCCA
GAAGACCCTCTGGCAGGGCTTGCTATCGATCAAATCGTCGGAGCAGTGGA
AGATATGATCGTCGCTACTGTACCCTACCTCTTCGCTCCTGAAGCAGACA
AACCCTTGATGAAGGAGAAGCTGGAGCAGGAAGTGTACCCACGGTTTTTC
TCGGCGTTTGAAAATTTGTTGAAGGCAGATGGGAAGGGATTTTTTTATGG
GCAGCACTTGACAATTGCCGATTTGGCGGTCTACCCGGTGCTGCAATGGA
TAACGACCTCAATTGTTGGTAAGGAGAGCTTGGACCCTTACCCTCTGCTC
AAGGCGTTGTTTGCGACGATTGAGGGGCATGAGAAGGTCAAGGACTATTA
TGACTACGAGAGGCGACGGACCGAGGAAAAAGAAGGGGAAGTGAGGCCAA
CAAGCTGA
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Synonyms
Publications