jgi.p|Nanoce1779_2|588004, mRNA_4822 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588004
Unique NamemRNA_4822
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1845
Alignment locationscaffold_9:700073..702124 -

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Properties
Property NameValue
TranscriptId588090
TrackFilteredModels2
ProteinId588004
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:700073..702124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588004gene_4822Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588004mRNA_4822-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4822CDS_4822Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4822 ID=mRNA_4822|Name=jgi.p|Nanoce1779_2|588004|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp
AGAATGGTGAACGCGCCCGCATTACTTCGCAGTACTCCCGGCAAGGGGAC
TGACTAAGCACCACCAAGGGGCCGGCCGGCCTCCTACATCGCCTGCATTC
AAAAGTAGCATACGGAAATATTTCTAGCAGCCTGCATACACCTCAGGACC
CCAAACACGTGCCAAAATGCATGATAAAGACCGTAACCACTGCACATGTC
TTCTACAGACATGTGAGGACGTGACTGGGCTGTGGTTTGGCGATTGGCGT
GCTAGGGACATCGGTCATGACCTCCCCCAGGCAACCCACCCCCAGCCCAC
TTCCTCCCCCATCACAAAACACATCATAAATGTCTATGCCCGCAGTCGAA
AGCGCTTACCAGAAACAGAAGAGGATGGTGCCAATGCTGAGCTTAAGCGT
GCCAGGAAGGACCAAAGGAAGGCATCAAGCGGCGCAGCAGGCGGAATAAC
CTTCCCAGGGAGAGGCTGCGCCCAAGCCCAACAAGGCGCCGCCTATGCCG
CTTTGGGATCCATTCAAGCCATCCGAGCTCGCTCCAAAAGCAATCAGGCC
AGCTGCACCGTTAAGGAGAGGTGGAGAAAGAACCATGCGAATAAAGGGAA
TTTCGATAAGGTCAACAAGAGGTTGGAGGAACAGGTAGCGAGCCTGAAAG
AAGACAATGCTGGGCTACTACAAGAGGTGGAGTTGTTCCAGGCCCTACTT
GGCAACGGAGTTCTTTTGGCGGCGTACCGGAAGCAGCTCGTCCAGATCAA
GATCTTGGAAGCGGAGTTGGAGGCCAAACGGGGGTCCCAACGATGCTGAC
CACCGACATGAGGTTGCAAGCGTGAGGGAGGACTGCGCCATCAAGGTGTG
GGAGCTTGAGGCGTCGAAAGAAGGGAGGAGGAGGGGAGGAAGTTGAGGGA
GAAGGTGAATAGGAATGCGAAGCAACTGGTAGAGGAGAAGGAGTATAGGA
GTTTAATGATTTTGCGGCACAGGAAGAAGGGGAAAGAATGTGATCATGTC
AAACAGGAGCTTTTCCGGGCGGGTATTAGTAATGAGAAGCTGGAGAGGGA
GCTGGCATCATTGAAAGAGTTGACATCGGAGGCAGTCAATGAATCCCTCG
ACGAGAAGAGGGAGCAGGGCATCATTGTTGCCAACTTAAGTGATGAGGTG
GAGGATTTTGAAAGGGAATTAGAGGAGTACAGGGAGGGGCTGGCGGTGTG
GGGGCAGCTCGACAAGGCCAAGCAAGACAACGCTAATCTCGAGTCGGCGA
GGAAGGAGATGACGCAGAAGCTGGGGCATGTGCAGGCATTGAGAACAAGG
AGGTCGAAAACCGAGGCGAAGAATAGGGAGGTGTGCAAGGCCGCGGGCTT
GAGACAGTTCTAGGGCGGAGACGCATGTGTGAAATTGCGGATGAAATCGA
GGTACGTCTCTTCACGCTTGCGCATGGCGGCAAGGATTTTGTCTCATCTG
CTTGGCACGAGGAATGTTGACCCGCTGTTGTTGAATTGATGCTGCTGTGC
CAGTGCTCGAAGGACAAGTTTTTGGAGCACTATATTTTTGAGCCCACGCA
GCGCGAGTCCATGCGCATCCTCCGCCTCAACCTCCCCAACGGCAACCTCA
TCATCCTGGTGGACTTTGCCATGAACTTCTCGGCCTCTTCCATGAAGCAA
GCACAAGACGCATTATTCTCCTCTGCTCAGACGACTCTGTTCATTGCCGT
GGTGTGGCAGCACGTGAGTTTGGGCTCGGGCATGTATGTGGACCGGGGTG
TGGGTGGAAGGCGCGAGGGTCGTTCAACAACAGCACATCTATGCGTATTA
GAGAAGAAATAAATTATGTGACTTACTTGCCAAAATGTTCAAATA
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protein sequence of jgi.p|Nanoce1779_2|588004

>mRNA_4822-protein ID=mRNA_4822-protein|Name=jgi.p|Nanoce1779_2|588004|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MHDKDRNHCTCLLQTCEDVTGLWFGDWRARDIGHDLPQATHPQPTSSPIT
KHIINVYARSRKRLPETEEDGANAELKRARKDQRKASSGAAGGITFPGRG
CAQAQQGAAYAALGSIQAIRARSKSNQASCTVKERWRKNHANKGNFDKVN
KRLEEQVASLKEDNAGLLQEVELFQALLGNGVLLAAYRKQLVQIKILEAE
LEAKRGSQRC*
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mRNA from alignment at scaffold_9:700073..702124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4822 ID=mRNA_4822|Name=jgi.p|Nanoce1779_2|588004|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at scaffold_9:700073..702124- (Nannochloropsis oceanica)
AGAATGGTGAACGCGCCCGCATTACTTCGCAGTACTCCCGGCAAGGGGAC
TGACTAAGCACCACCAAGGGGCCGGCCGGCCTCCTACATCGCCTGCATTC
AAAAGTAGCATACGGAAATATTTCTAGCAGCCTGCATACACCTCAGGACC
CCAAACACGTGCCAAAATGCATGATAAAGACCGTAACCACTGCACATGTC
TTCTACAGACATGTGAGGACGTGACTGGGCTGTGGTTTGGCGATTGGCGT
GCTAGGGACATCGGTCATGACCTCCCCCAGGCAACCCACCCCCAGCCCAC
TTCCTCCCCCATCACAAAACACATCATAAATGTCTATGCCCGCAGTCGAA
AGCGCTTACCAGAAACAGAAGAGGATGGTGCCAATGCTGAGCTTAAGCGT
GCCAGGAAGGACCAAAGGAAGGCATCAAGCGGCGCAGCAGGCGGAATAAC
CTTCCCAGGGAGAGGCTGCGCCCAAGCCCAACAAGGCGCCGCCTATGCCG
CTTTGGGATCCATTCAAGCCATCCGAGCTCGCTCCAAAAGCAATCAGGCC
AGCTGCACCGTTAAGGAGAGGTATCAGTGATAAATTGGTCAAGTTCGCGT
GCCACAAACTAAAGCAGCCCCCCCCCCCAAAGCAAGCAGCCCCCTCACTC
TCTTTCCCTGCTCCTTCACTTTCCCTCCTCAACACAGGTGGAGAAAGAAC
CATGCGAATAAAGGGAATTTCGATAAGGTCAACAAGAGGTTGGAGGAACA
GGTAGCGAGCCTGAAAGAAGACAATGCTGGGCTACTACAAGAGGTGGAGT
TGTTCCAGGCCCTACTTGGCAACGGAGTTCTTTTGGCGGCGTACCGGAAG
CAGCTCGTCCAGATCAAGATCTTGGAAGCGGAGTTGGAGGCCAAACGGGG
GTCCCAACGATGCTGACCACCGACATGAGGTTGCAAGCGTGAGGGAGGAC
TGCGCCATCAAGGTGTGGGAGCTTGAGGCGTCGAAAGAAGGGAGGAGGAG
GGGAGGAAGTTGAGGGAGAAGGTGAATAGGAATGCGAAGCAACTGGTAGA
GGAGAAGGAGTATAGGAGTTTAATGATTTTGCGGCACAGGAAGAAGGGGA
AAGAATGTGATCATGTCAAACAGGAGCTTTTCCGGGCGGGTATTAGTAAT
GAGAAGCTGGAGAGGGAGCTGGCATCATTGAAAGAGTTGACATCGGAGGC
AGTCAATGAATCCCTCGACGAGAAGAGGGAGCAGGGCATCATTGTTGCCA
ACTTAAGTGATGAGGTGGAGGATTTTGAAAGGGAATTAGAGGAGTACAGG
GAGGGGCTGGCGGTGTGGGGGCAGCTCGACAAGGCCAAGCAAGACAACGC
TAATCTCGAGTCGGCGAGGAAGGAGATGACGCAGAAGGTAGGCTTACTCT
TTCCAGTCACCATTTTTTTCTTCCCTCATTCCTCACTCACCGCTCTTCCT
CCCCACCCTCCATCACATCACATATAGCTGGGGCATGTGCAGGCATTGAG
AACAAGGAGGTCGAAAACCGAGGCGAAGAATAGGGAGGTGTGCAAGGCCG
CGGGCTTGAGACAGTTCTAGGGCGGAGACGCATGTGTGAAATTGCGGATG
AAATCGAGGTACGTCTCTTCACGCTTGCGCATGGCGGCAAGGATTTTGTC
TCATCTGCTTGGCACGAGGAATGTTGACCCGCTGTTGTTGAATTGATGCT
GCTGTGCCAGTGCTCGAAGGACAAGTTTTTGGAGCACTATATTTTTGAGC
CCACGCAGCGCGAGTCCATGCGCATCCTCCGCCTCAACCTCCCCAACGGC
AACCTCATCATCCTGGTGGACTTTGCCATGAACTTCTCGGCCTCTTCCAT
GAAGCAAGCACAAGACGCATTATTCTCCTCTGCTCAGACGACTCTGTTCA
TTGCCGTGGTGTGGCAGCACGTGAGTTTGGGCTCGGGCATGTATGTGGAC
CGGGGTGTGGGTGGAAGGCGCGAGGGTCGTTCAACAACAGCACATCTATG
CGTATTAGAGAAGAAATAAATTATGTGACTTACTTGCCAAAATGTTCAAA
TA
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Coding sequence (CDS) from alignment at scaffold_9:700073..702124-

>mRNA_4822 ID=mRNA_4822|Name=jgi.p|Nanoce1779_2|588004|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_9:700073..702124- (Nannochloropsis oceanica)
GTGGAGAAAGAACCATGCGAATAAAGGGAATTTCGATAAGGTCAACAAGA
GGTTGGAGGAACAGGTAGCGAGCCTGAAAGAAGACAATGCTGGGCTACTA
CAAGAGGTGGAGTTGTTCCAGGCCCTACTTGGCAACGGAGTTCTTTTGGC
GGCGTACCGGAAGCAGCTCGTCCAGATCAAGATCTTGGAAGCGGAGTTGG
AGGCCAAACGGGGGTCCCAACGATGCTGAATGCATGATAAAGACCGTAAC
CACTGCACATGTCTTCTACAGACATGTGAGGACGTGACTGGGCTGTGGTT
TGGCGATTGGCGTGCTAGGGACATCGGTCATGACCTCCCCCAGGCAACCC
ACCCCCAGCCCACTTCCTCCCCCATCACAAAACACATCATAAATGTCTAT
GCCCGCAGTCGAAAGCGCTTACCAGAAACAGAAGAGGATGGTGCCAATGC
TGAGCTTAAGCGTGCCAGGAAGGACCAAAGGAAGGCATCAAGCGGCGCAG
CAGGCGGAATAACCTTCCCAGGGAGAGGCTGCGCCCAAGCCCAACAAGGC
GCCGCCTATGCCGCTTTGGGATCCATTCAAGCCATCCGAGCTCGCTCCAA
AAGCAATCAGGCCAGCTGCACCGTTAAGGAGAGGTGGAGAAAGAACCATG
CGAATAAAGGGAATTTCGATAAGGTCAACAAGAGGTTGGAGGAACAGGTA
GCGAGCCTGAAAGAAGACAATGCTGGGCTACTACAAGAGGTGGAGTTGTT
CCAGGCCCTACTTGGCAACGGAGTTCTTTTGGCGGCGTACCGGAAGCAGC
TCGTCCAGATCAAGATCTTGGAAGCGGAGTTGGAGGCCAAACGGGGGTCC
CAACGATGCTGAATGCATGATAAAGACCGTAACCACTGCACATGTCTTCT
ACAGACATGTGAGGACGTGACTGGGCTGTGGTTTGGCGATTGGCGTGCTA
GGGACATCGGTCATGACCTCCCCCAGGCAACCCACCCCCAGCCCACTTCC
TCCCCCATCACAAAACACATCATAAATGTCTATGCCCGCAGTCGAAAGCG
CTTACCAGAAACAGAAGAGGATGGTGCCAATGCTGAGCTTAAGCGTGCCA
GGAAGGACCAAAGGAAGGCATCAAGCGGCGCAGCAGGCGGAATAACCTTC
CCAGGGAGAGGCTGCGCCCAAGCCCAACAAGGCGCCGCCTATGCCGCTTT
GGGATCCATTCAAGCCATCCGAGCTCGCTCCAAAAGCAATCAGGCCAGCT
GCACCGTTAAGGAGAG
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Synonyms
Publications