jgi.p|Nanoce1779_2|565584, mRNA_4821 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565584
Unique NamemRNA_4821
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length624
Alignment locationscaffold_9:700106..701052 -

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Properties
Property NameValue
TranscriptId565670
TrackFilteredModels2
ProteinId565584
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:700106..701052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565584gene_4821Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565584mRNA_4821-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4821CDS_4821Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4821 ID=mRNA_4821|Name=jgi.p|Nanoce1779_2|565584|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGATTTTGCGGCACAGGAAGAAGGGGAAAGAATGTGATCATGTCAAACA
GGAGCTTTTCCGGGCGGGTATTAGTAATGAGAAGCTGGAGAGGGAGCTGG
CATCATTGAAAGAGTTGACATCGGAGGCAGTCAATGAATCCCTCGACGAG
AAGAGGGAGCAGGGCATCATTGTTGCCAACTTAAGTGATGAGGTGGAGGA
TTTTGAAAGGGAATTAGAGGAGTACAGGGAGGGGCTGGCGGTGTGGGGGC
AGCTCGACAAGGCCAAGCAAGACAACGCTAATCTCGAGTCGGCGAGGAAG
GAGATGACGCAGAAGTGCTCGAAGGACAAGTTTTTGGAGCACTATATTTT
TGAGCCCACGCAGCGCGAGTCCATGCGCATCCTCCGCCTCAACCTCCCCA
ACGGCAACCTCATCATCCTGGTGGACTTTGCCATGAACTTCTCGGCCTCT
TCCATGAAGCAAGCACAAGACGCATTATTCTCCTCTGCTCAGACGACTCT
GTTCATTGCCGTGGTGTGGCAGCACGTGAGTTTGGGCTCGGGCATGTATG
TGGACCGGGGTGTGGGTGGAAGGCGCGAGGGTCGTTCAACAACAGCACAT
CTATGCGTATTAGAGAAGAAATAA
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protein sequence of jgi.p|Nanoce1779_2|565584

>mRNA_4821-protein ID=mRNA_4821-protein|Name=jgi.p|Nanoce1779_2|565584|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MILRHRKKGKECDHVKQELFRAGISNEKLERELASLKELTSEAVNESLDE
KREQGIIVANLSDEVEDFERELEEYREGLAVWGQLDKAKQDNANLESARK
EMTQKCSKDKFLEHYIFEPTQRESMRILRLNLPNGNLIILVDFAMNFSAS
SMKQAQDALFSSAQTTLFIAVVWQHVSLGSGMYVDRGVGGRREGRSTTAH
LCVLEKK*
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mRNA from alignment at scaffold_9:700106..701052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4821 ID=mRNA_4821|Name=jgi.p|Nanoce1779_2|565584|organism=Nannochloropsis oceanica|type=mRNA|length=947bp|location=Sequence derived from alignment at scaffold_9:700106..701052- (Nannochloropsis oceanica)
ATGATTTTGCGGCACAGGAAGAAGGGGAAAGAATGTGATCATGTCAAACA
GGAGCTTTTCCGGGCGGGTATTAGTAATGAGAAGCTGGAGAGGGAGCTGG
CATCATTGAAAGAGTTGACATCGGAGGCAGTCAATGAATCCCTCGACGAG
AAGAGGGAGCAGGGCATCATTGTTGCCAACTTAAGTGATGAGGTGGAGGA
TTTTGAAAGGGAATTAGAGGAGTACAGGGAGGGGCTGGCGGTGTGGGGGC
AGCTCGACAAGGCCAAGCAAGACAACGCTAATCTCGAGTCGGCGAGGAAG
GAGATGACGCAGAAGGTAGGCTTACTCTTTCCAGTCACCATTTTTTTCTT
CCCTCATTCCTCACTCACCGCTCTTCCTCCCCACCCTCCATCACATCACA
TATAGCTGGGGCATGTGCAGGCATTGAGAACAAGGAGGTCGAAAACCGAG
GCGAAGAATAGGGAGGTGTGCAAGGCCGCGGGCTTGAGACAGTTCTAGGG
CGGAGACGCATGTGTGAAATTGCGGATGAAATCGAGGTACGTCTCTTCAC
GCTTGCGCATGGCGGCAAGGATTTTGTCTCATCTGCTTGGCACGAGGAAT
GTTGACCCGCTGTTGTTGAATTGATGCTGCTGTGCCAGTGCTCGAAGGAC
AAGTTTTTGGAGCACTATATTTTTGAGCCCACGCAGCGCGAGTCCATGCG
CATCCTCCGCCTCAACCTCCCCAACGGCAACCTCATCATCCTGGTGGACT
TTGCCATGAACTTCTCGGCCTCTTCCATGAAGCAAGCACAAGACGCATTA
TTCTCCTCTGCTCAGACGACTCTGTTCATTGCCGTGGTGTGGCAGCACGT
GAGTTTGGGCTCGGGCATGTATGTGGACCGGGGTGTGGGTGGAAGGCGCG
AGGGTCGTTCAACAACAGCACATCTATGCGTATTAGAGAAGAAATAA
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Coding sequence (CDS) from alignment at scaffold_9:700106..701052-

>mRNA_4821 ID=mRNA_4821|Name=jgi.p|Nanoce1779_2|565584|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_9:700106..701052- (Nannochloropsis oceanica)
TGCTCGAAGGACAAGTTTTTGGAGCACTATATTTTTGAGCCCACGCAGCG
CGAGTCCATGCGCATCCTCCGCCTCAACCTCCCCAACGGCAACCTCATCA
TCCTGGTGGACTTTGCCATGAACTTCTCGGCCTCTTCCATGAAGCAAGCA
CAAGACGCATTATTCTCCTCTGCTCAGACGACTCTGTTCATTGCCGTGGT
GTGGCAGCACGTGAGTTTGGGCTCGGGCATGTATGTGGACCGGGGTGTGG
GTGGAAGGCGCGAGGGTCGTTCAACAACAGCACATCTATGCGTATTAGAG
AAGAAATAAATGATTTTGCGGCACAGGAAGAAGGGGAAAGAATGTGATCA
TGTCAAACAGGAGCTTTTCCGGGCGGGTATTAGTAATGAGAAGCTGGAGA
GGGAGCTGGCATCATTGAAAGAGTTGACATCGGAGGCAGTCAATGAATCC
CTCGACGAGAAGAGGGAGCAGGGCATCATTGTTGCCAACTTAAGTGATGA
GGTGGAGGATTTTGAAAGGGAATTAGAGGAGTACAGGGAGGGGCTGGCGG
TGTGGGGGCAGCTCGACAAGGCCAAGCAAGACAACGCTAATCTCGAGTCG
GCGAGGAAGGAGATGACGCAGAAGTGCTCGAAGGACAAGTTTTTGGAGCA
CTATATTTTTGAGCCCACGCAGCGCGAGTCCATGCGCATCCTCCGCCTCA
ACCTCCCCAACGGCAACCTCATCATCCTGGTGGACTTTGCCATGAACTTC
TCGGCCTCTTCCATGAAGCAAGCACAAGACGCATTATTCTCCTCTGCTCA
GACGACTCTGTTCATTGCCGTGGTGTGGCAGCACGTGAGTTTGGGCTCGG
GCATGTATGTGGACCGGGGTGTGGGTGGAAGGCGCGAGGGTCGTTCAACA
ACAGCACATCTATGCGTATTAGAGAAGAAATAAATGATTTTGCGGCACAG
GAAGAAGGGGAAAGAATGTGATCATGTCAAACAGGAGCTTTTCCGGGCGG
GTATTAGTAATGAGAAGCTGGAGAGGGAGCTGGCATCATTGAAAGAGTTG
ACATCGGAGGCAGTCAATGAATCCCTCGACGAGAAGAGGGAGCAGGGCAT
CATTGTTGCCAACTTAAGTGATGAGGTGGAGGATTTTGAAAGGGAATTAG
AGGAGTACAGGGAGGGGCTGGCGGTGTGGGGGCAGCTCGACAAGGCCAAG
CAAGACAACGCTAATCTCGAGTCGGCGAGGAAGGAGATGACGCAGAAG
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Synonyms
Publications