jgi.p|Nanoce1779_2|243330, mRNA_482 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|243330
Unique Name	mRNA_482
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1392
Alignment location	scaffold_3:1170615..1172579 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	243416
Track	FilteredModels2
ProteinId	243330

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1170615..1172579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|243330	gene_482	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|243330	mRNA_482-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_482	CDS_482	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1170615..1172579+
coding sequence from alignment at scaffold_3:1170615..1172579+

mRNA sequence

>mRNA_482 ID=mRNA_482|Name=jgi.p|Nanoce1779_2|243330|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp
TCGTACACCTCACCAGCTTCACGAAGTTGCATCAGTCCGCAAGCTCACGC
ACAGACACACACACTTGTGATTTGTTACAGGAGCGAGGAATTACAGCAGC
AACAAAAGGCTTTGTCCCCACGTTGCGTTGGCAAGCCTGGACTTCGACAA
AAACCTCTTCCTTCTGCGACACTCCCCTCCCCTCCTCCTATTCTCATAAG
ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA
CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT
CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC
CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT
CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT
CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA
CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC
ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG
GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA
GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC
CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG
GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG
TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC
GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG
AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG
ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA
CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC
GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG
GACGAGAGGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCG
GCGACTGACATCATTCGCGGGTAGGGAGAAACAGGGAGATAGGAGAGATC
AGTACGGGAAAGTACATGCTGTGATCTGATGAAGAGGCAACAGAGACAAC
GCAAAAACACGCGCATTTATGGAGAACTTACGAAAAGGCTGCATCAGCAG
GAGGAGCAGTAGCAGCATCATAGAAAAGCACATCCCCCCCCCAACAAGAA
CGAGACAGTCAAATTTTTAAGTGCTGTCGAGGAGGAGGAAGG

protein sequence of jgi.p|Nanoce1779_2|243330

>mRNA_482-protein ID=mRNA_482-protein|Name=jgi.p|Nanoce1779_2|243330|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRT
PADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAPKAVPASQ
QQQQQQAPPQPQQASRPPSQQQQQYQQQRPVGAGGRGAPRGGRYSTRGGG
GGRGGGRGGGIGGDRPTVSGPLPGTGGHLLNRRGKVEGASQGGPEGGEGE
FDFQEALQGFNKEEEFSKLAVNDDNTSISNNDTEAGGAGATEGGGNIEGA
TTAAVAAAVVPEVKKYNKSSFFDDLSSGQGMGGRPTLAEERKTNMDTFGV
DERRSGGKSVCTWHALRRLTSFAGREKQGDRRDQYGKVHAVI*

mRNA from alignment at scaffold_3:1170615..1172579+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_482 ID=mRNA_482|Name=jgi.p|Nanoce1779_2|243330|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at scaffold_3:1170615..1172579+ (Nannochloropsis oceanica)
TCGTACACCTCACCAGCTTCACGAAGTTGCATCAGTCCGCAAGCTCACGC
ACAGGTGATCCTGGCAACGGTCTCGGTGCTGAAGCGGTGGAGCCGGTGGT
GCAGTGCGGCCAAACTCTTCCCACACCTCTCCTTCCCCTTCCTCCCCGCT
CTCATCTTCGTCGCTTGCGTTGGATACACCAAGCAAAGCATAGCAACGCT
TCTATTCTCAATACCACTCACGCGTATCCCCCCACCCACATATTTACATT
ACACAGACACACACACTTGTGATTTGTTACAGGAGCGAGGAATTACAGCA
GCAACAAAAGGCTTTGTCCCCACGTTGCGTTGGCAAGCCTGGACTTCGAC
AAAAACCTCTTCCTTCTGCGACACTCCCCTCCCCTCCTCCTATTCTCATA
AGATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCC
AACAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAA
GTCCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGA
CCCCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTAC
ATCCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCC
CTCTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCC
AACAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGA
CCACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGC
TGGTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAG
GAGGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCC
ACCGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACG
AGGAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTG
AGTTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTC
TCGAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATAC
CGAGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTG
CGACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATAT
AACAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGG
GCGGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCG
TGGCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGA
GGGGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAG
GGGTCGTGGGGGGTATAGGGGAGGGAGGGGGGGGAGGGAGGGGATACGCC
CCGGCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAAGTGGAGGG
AGGAAAACAGAAGGGGAGAGATGAGAGGGTTGGTGGTCGTGGATGGGACG
AATGGAAGAGACGGAGGAGGAGGAGGAGGAGGAGGACGACGACGAGGACG
AGAGGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCGGCGA
CTGACATCATTCGCGGGCGGGAGAATGAGGGATCACATTAAAAGGGAAGT
CTTCTTCGAGGAGAAGGAGGAGGAGGACGCACCTTAGCGAGAGGTAGGGA
GAAACAGGGAGATAGGAGAGATCAGTACGGGAAAGTACATGCTGTGATCT
GATGAAGAGGCAACAGAGACAACGCAAAAACACGCGCATTTATGGAGAAC
TTACGAAAAGGCTGCATCAGCAGGAGGAGCAGTAGCAGCATCATAGAAAA
GCACATCCCCCCCCCAACAAGAACGAGACAGTCAAATTTTTAAGTGCTGT
CGAGGAGGAGGAAGG

Coding sequence (CDS) from alignment at scaffold_3:1170615..1172579+

>mRNA_482 ID=mRNA_482|Name=jgi.p|Nanoce1779_2|243330|organism=Nannochloropsis oceanica|type=CDS|length=3087bp|location=Sequence derived from alignment at scaffold_3:1170615..1172579+ (Nannochloropsis oceanica)
ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA
CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT
CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC
CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT
CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT
CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA
CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC
ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG
GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA
GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC
CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG
GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG
TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC
GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG
AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG
ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA
CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC
GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG
GACGAGAGGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCG
GCGACTGACATCATTCGCGGGTAGGGAGAAACAGGGAGATAGGAGAGATC
AGTACGGGAAAGTACATGCTGTGATCTGAATGGCGGCACCGGGCAAGCTT
ATCGGCTCGCACATCAGCCTCATCTCCAACAAGGACATCCGGTACGAAGG
CATACTCTTCTCTATTGACCAAGAGAAGTCCTGCGTCACCTTGCAAGCAG
TCAAGTGCCTCGGCACCGAAGGCCGGACCCCCGCAGACGGACAGGCGTAT
CCGGCTGATGACACCTTGTACGATTACATCCTATTCGAGGCTTCGGACAT
CAAGGACTTGCACGTCCACGACGCCCCCTCTACCCCAGCCGCTTCTGCTC
CCGCACCCAAGGCCGTTCCTGCTTCCCAACAGCAGCAGCAGCAACAAGCA
CCGCCGCAGCCGCAACAAGCTTCGAGACCACCATCACAACAGCAGCAGCA
GTATCAGCAGCAACGTCCAGTGGGTGCTGGTGGTCGTGGAGCCCCAAGAG
GAGGACGATACAGCACACGAGGAGGAGGAGGAGGACGAGGAGGAGGGCGA
GGGGGAGGGATTGGAGGAGATCGTCCCACCGTCTCCGGCCCTTTGCCTGG
CACAGGCGGGCATTTATTAAACCGACGAGGAAAGGTTGAGGGAGCGTCTC
AGGGCGGACCGGAGGGAGGGGAGGGTGAGTTTGATTTCCAAGAGGCGCTG
CAGGGTTTTAATAAAGAGGAGGAGTTCTCGAAGTTGGCTGTTAACGACGA
CAACACCAGCATCAGCAACAACGATACCGAGGCAGGTGGAGCGGGAGCCA
CGGAGGGCGGCGGAAATATCGAGGGTGCGACGACGGCGGCAGTAGCAGCA
GCGGTGGTTCCGGAAGTAAAGAAATATAACAAGAGCTCATTCTTTGACGA
CCTAAGCTCGGGACAAGGGATGGGAGGGCGGCCGACCCTGGCAGAGGAGA
GGAAGACGAACATGGACACGTTTGGCGTGGACGAGAGGAGGAGTGGAGGT
AAGAGTGTCTGTACTTGGCATGCACTGCGGCGACTGACATCATTCGCGGG
TAGGGAGAAACAGGGAGATAGGAGAGATCAGTACGGGAAAGTACATGCTG
TGATCTGAATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTC
ATCTCCAACAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCA
AGAGAAGTCCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAG
GCCGGACCCCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTAC
GATTACATCCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGA
CGCCCCCTCTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTG
CTTCCCAACAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCT
TCGAGACCACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGT
GGGTGCTGGTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAG
GAGGAGGAGGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGAT
CGTCCCACCGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAA
CCGACGAGGAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGG
AGGGTGAGTTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAG
GAGTTCTCGAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAA
CGATACCGAGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCG
AGGGTGCGACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAG
AAATATAACAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGAT
GGGAGGGCGGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGT
TTGGCGTGGACGAGAGGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCAT
GCACTGCGGCGACTGACATCATTCGCGGGTAGGGAGAAACAGGGAGATAG
GAGAGATCAGTACGGGAAAGTACATGCTGTGATCTGA

Synonyms

Publications