jgi.p|Nanoce1779_2|587992, mRNA_4817 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587992
Unique NamemRNA_4817
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length677
Alignment locationscaffold_9:693235..694090 -

Link to JBrowse

Properties
Property NameValue
TranscriptId588078
TrackFilteredModels2
ProteinId587992
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:693235..694090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587992gene_4817Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587992mRNA_4817-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4817CDS_4817Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4817 ID=mRNA_4817|Name=jgi.p|Nanoce1779_2|587992|organism=Nannochloropsis oceanica|type=mRNA|length=677bp
GACGATGTCGATACATTCTGCGACAACAAGAGGACTACAAAAGTAATCGT
AATGGAAAGAACGACGCATGTGTGTGGATGTGTTTGTTTTATTTTATTTA
TTTCTTGTCTTTGATTTTTGTTTCTCATTTTTACTATTTTTTCCAACGCC
AGCCTTGTGGGGATGGAGGACTGATAGGCGTGGCGGACTTCCACTTACCT
TCAGTCTGTTCGAGTTTCATTTATCTTCCGTTATAATTTCTCTCTTTTTC
CCCTCACACGCAGCGCCAGGGGACCGTACATAGCAACAACGTGGCTCTCG
TCCTGGGAGATAATGCTTGGGGTTGTGGGGAGAAAATGATAAAGGAAAGG
AGGTTTGGATAGAACGCAATCCCTCCATTTCCTCCTCTTTCCCCTCCTCC
TGCTATCTCCCCTACTCCTGCCACTGCTGCCACTGCCGCGGGTCCACAAT
CATCCACCGAGAGCATCACCGTCCTCCTAGTCTGCTCACTCAGTAAATCG
TGGCGGTGGTGCCTATGCTGGTGCTGCTGGTGCTGCTGCTTCGAACGCGA
CGGCAAGATATGAGGACATGTGTGCTGGTGCTTTTGCAAGCGCGAAGACG
ACAACTGGGGAGACGTCGAGCCAGTCCCTCCTTCTCCTCCTCCTCCCTCT
CCTCCCTCTCCTTCTCCTGCTTCCCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|587992

>mRNA_4817-protein ID=mRNA_4817-protein|Name=jgi.p|Nanoce1779_2|587992|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MCVDVFVLFYLFLVFDFCFSFLLFFPTPALWGWRTDRRGGLPLTFSLFEF
HLSSVIISLFFPSHAAPGDRT*
back to top

mRNA from alignment at scaffold_9:693235..694090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4817 ID=mRNA_4817|Name=jgi.p|Nanoce1779_2|587992|organism=Nannochloropsis oceanica|type=mRNA|length=856bp|location=Sequence derived from alignment at scaffold_9:693235..694090- (Nannochloropsis oceanica)
GACGATGTCGATACATTCTGCGACAACAAGAGGACTACAAAAGTAATCGT
AATGGAAAGAACGACGCATGTGTGTGGATGTGTTTGTTTTATTTTATTTA
TTTCTTGTCTTTGATTTTTGTTTCTCATTTTTACTATTTTTTCCAACGCC
AGCCTTGTGGGGATGGAGGACTGATAGGCGTGGCGGACTTCCACTTACCT
TCAGTCTGTTCGAGTTTCATTTATCTTCCGTTATAATTTCTCTCTTTTTC
CCCTCACACGCAGCGCCAGGGGACCGTACATAGCAACAACGTGGCTCTCG
TCCTGGGAGATAATGCTTGGGGTTGTGGGGAGAAAATGATAAAGGAAAGG
AGGTAGGGATGGGTGGATGGAGGGAGGGAGGGAGAGCAAGACAGGAAAGG
GCAGGCCCCAGAATATATCACCCCCACCTGATCCATCCCGATGCTTCAGC
TAGTCACTTTCTCTTTACCGCTTTCAAAGCTACTTTTCTACCCATCTATC
TACACTTACTCATACTTTCATCTCACGTCAGGTTTGGATAGAACGCAATC
CCTCCATTTCCTCCTCTTTCCCCTCCTCCTGCTATCTCCCCTACTCCTGC
CACTGCTGCCACTGCCGCGGGTCCACAATCATCCACCGAGAGCATCACCG
TCCTCCTAGTCTGCTCACTCAGTAAATCGTGGCGGTGGTGCCTATGCTGG
TGCTGCTGGTGCTGCTGCTTCGAACGCGACGGCAAGATATGAGGACATGT
GTGCTGGTGCTTTTGCAAGCGCGAAGACGACAACTGGGGAGACGTCGAGC
CAGTCCCTCCTTCTCCTCCTCCTCCCTCTCCTCCCTCTCCTTCTCCTGCT
TCCCCC
back to top

Coding sequence (CDS) from alignment at scaffold_9:693235..694090-

>mRNA_4817 ID=mRNA_4817|Name=jgi.p|Nanoce1779_2|587992|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_9:693235..694090- (Nannochloropsis oceanica)
ATGTGTGTGGATGTGTTTGTTTTATTTTATTTATTTCTTGTCTTTGATTT
TTGTTTCTCATTTTTACTATTTTTTCCAACGCCAGCCTTGTGGGGATGGA
GGACTGATAGGCGTGGCGGACTTCCACTTACCTTCAGTCTGTTCGAGTTT
CATTTATCTTCCGTTATAATTTCTCTCTTTTTCCCCTCACACGCAGCGCC
AGGGGACCGTACATAG
back to top
Synonyms
Publications