jgi.p|Nanoce1779_2|587989, mRNA_4814 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587989
Unique NamemRNA_4814
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1082
Alignment locationscaffold_9:689154..690235 +

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Properties
Property NameValue
TranscriptId588075
TrackFilteredModels2
ProteinId587989
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:689154..690235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587989gene_4814Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587989mRNA_4814-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4814CDS_4814Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4814 ID=mRNA_4814|Name=jgi.p|Nanoce1779_2|587989|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp
AGCACGATCATCCTCCCCACCCTGCCCTCACCACCGACACAGAGGAATGC
CCTGGTCCTACTGTTGCTGCTGCTGCTACTGGAGGAGGGGAGGATGGAGC
AGGGGTCCGCTTGTCAGCAGCAGCGATGGCGGTAGGGGTAGGTTCGTTCC
ATGACCCACCGGGCGTGCAAGGGCTGGCACATTACTTGGAGCATATGTTG
TTCATGGGAAGCGAAAAATACCCGGATGAAAATGCGTATGATTCATTTAT
AAGTAGTCGGGGAGGGTACAGCAACGCCATGACTGAGTGTGAATACACGG
TGTACCATTTCGAGGTGCCGCCGGCAAGTTTTGAAAAGACCCTTGATATC
TTCGCCCAGTTCTTCATAAGCCCCTTGATGAGGCCCGAGGCGTCTTCCCG
GGAATTGGAGGCCATTGAAAGCGAATTCAATCTCTCCCGTGGCAACGACA
GCACGCGGTGCACTCAGTTGATCTGCCATACCTCCCGTTCGTCGCATCCT
TACTCCAGCTTCCCCTGGGGGAACCTCTCGTCACTCCGGGACGCCCCGTT
GGCGGCTGGTTTGGACATTAACGATGAGCTTCGCCGTTTTCACCGTCAGC
ACTACACTGCGCCGAACATGAGGTTGCTCCTCCTCGGCATGGAAGACCTT
GACATCCTCGAGAATATCGTCTGTCACACATTTGCTGGTATCCGTGTCCC
TCCCTCTCTCCCTCCCTCATCACCTTTACCGATTGTGCAGCCTTCTATTC
CTTCTGCCCTCCCTCCCTCGATTCTGGACGGCCTGCCGCCCCCGATGGAC
GAGACCAATGCCTTGGGATGGTTGTTTCGTATAGTGCCTGTTAGGGACTT
ACACCAGCTGCACCTCACCTGGCAGCTGCCTTCCTTGCTGGAGCAGTACC
GAGCCAAGCCATGGGAGTATTTTGGGTAAGGGAAGGAGGGGACCGAGGGA
GGGAAGGAGGTGAGATGAGGAGATTGTGATGTATTGCTAGGCGTTTGAGG
CTGAGGCCTGATCGTTTACCCTCCCTCCCTTCCTCCCTCCCTCCCTGCTT
CTCTTTCCAGGCATCTCCTCGGGCATGAAGGC
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protein sequence of jgi.p|Nanoce1779_2|587989

>mRNA_4814-protein ID=mRNA_4814-protein|Name=jgi.p|Nanoce1779_2|587989|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MAVGVGSFHDPPGVQGLAHYLEHMLFMGSEKYPDENAYDSFISSRGGYSN
AMTECEYTVYHFEVPPASFEKTLDIFAQFFISPLMRPEASSRELEAIESE
FNLSRGNDSTRCTQLICHTSRSSHPYSSFPWGNLSSLRDAPLAAGLDIND
ELRRFHRQHYTAPNMRLLLLGMEDLDILENIVCHTFAGIRVPPSLPPSSP
LPIVQPSIPSALPPSILDGLPPPMDETNALGWLFRIVPVRDLHQLHLTWQ
LPSLLEQYRAKPWEYFG*
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mRNA from alignment at scaffold_9:689154..690235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4814 ID=mRNA_4814|Name=jgi.p|Nanoce1779_2|587989|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp|location=Sequence derived from alignment at scaffold_9:689154..690235+ (Nannochloropsis oceanica)
AGCACGATCATCCTCCCCACCCTGCCCTCACCACCGACACAGAGGAATGC
CCTGGTCCTACTGTTGCTGCTGCTGCTACTGGAGGAGGGGAGGATGGAGC
AGGGGTCCGCTTGTCAGCAGCAGCGATGGCGGTAGGGGTAGGTTCGTTCC
ATGACCCACCGGGCGTGCAAGGGCTGGCACATTACTTGGAGCATATGTTG
TTCATGGGAAGCGAAAAATACCCGGATGAAAATGCGTATGATTCATTTAT
AAGTAGTCGGGGAGGGTACAGCAACGCCATGACTGAGTGTGAATACACGG
TGTACCATTTCGAGGTGCCGCCGGCAAGTTTTGAAAAGACCCTTGATATC
TTCGCCCAGTTCTTCATAAGCCCCTTGATGAGGCCCGAGGCGTCTTCCCG
GGAATTGGAGGCCATTGAAAGCGAATTCAATCTCTCCCGTGGCAACGACA
GCACGCGGTGCACTCAGTTGATCTGCCATACCTCCCGTTCGTCGCATCCT
TACTCCAGCTTCCCCTGGGGGAACCTCTCGTCACTCCGGGACGCCCCGTT
GGCGGCTGGTTTGGACATTAACGATGAGCTTCGCCGTTTTCACCGTCAGC
ACTACACTGCGCCGAACATGAGGTTGCTCCTCCTCGGCATGGAAGACCTT
GACATCCTCGAGAATATCGTCTGTCACACATTTGCTGGTATCCGTGTCCC
TCCCTCTCTCCCTCCCTCATCACCTTTACCGATTGTGCAGCCTTCTATTC
CTTCTGCCCTCCCTCCCTCGATTCTGGACGGCCTGCCGCCCCCGATGGAC
GAGACCAATGCCTTGGGATGGTTGTTTCGTATAGTGCCTGTTAGGGACTT
ACACCAGCTGCACCTCACCTGGCAGCTGCCTTCCTTGCTGGAGCAGTACC
GAGCCAAGCCATGGGAGTATTTTGGGTAAGGGAAGGAGGGGACCGAGGGA
GGGAAGGAGGTGAGATGAGGAGATTGTGATGTATTGCTAGGCGTTTGAGG
CTGAGGCCTGATCGTTTACCCTCCCTCCCTTCCTCCCTCCCTCCCTGCTT
CTCTTTCCAGGCATCTCCTCGGGCATGAAGGC
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Coding sequence (CDS) from alignment at scaffold_9:689154..690235+

>mRNA_4814 ID=mRNA_4814|Name=jgi.p|Nanoce1779_2|587989|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_9:689154..690235+ (Nannochloropsis oceanica)
ATGGCGGTAGGGGTAGGTTCGTTCCATGACCCACCGGGCGTGCAAGGGCT
GGCACATTACTTGGAGCATATGTTGTTCATGGGAAGCGAAAAATACCCGG
ATGAAAATGCGTATGATTCATTTATAAGTAGTCGGGGAGGGTACAGCAAC
GCCATGACTGAGTGTGAATACACGGTGTACCATTTCGAGGTGCCGCCGGC
AAGTTTTGAAAAGACCCTTGATATCTTCGCCCAGTTCTTCATAAGCCCCT
TGATGAGGCCCGAGGCGTCTTCCCGGGAATTGGAGGCCATTGAAAGCGAA
TTCAATCTCTCCCGTGGCAACGACAGCACGCGGTGCACTCAGTTGATCTG
CCATACCTCCCGTTCGTCGCATCCTTACTCCAGCTTCCCCTGGGGGAACC
TCTCGTCACTCCGGGACGCCCCGTTGGCGGCTGGTTTGGACATTAACGAT
GAGCTTCGCCGTTTTCACCGTCAGCACTACACTGCGCCGAACATGAGGTT
GCTCCTCCTCGGCATGGAAGACCTTGACATCCTCGAGAATATCGTCTGTC
ACACATTTGCTGGTATCCGTGTCCCTCCCTCTCTCCCTCCCTCATCACCT
TTACCGATTGTGCAGCCTTCTATTCCTTCTGCCCTCCCTCCCTCGATTCT
GGACGGCCTGCCGCCCCCGATGGACGAGACCAATGCCTTGGGATGGTTGT
TTCGTATAGTGCCTGTTAGGGACTTACACCAGCTGCACCTCACCTGGCAG
CTGCCTTCCTTGCTGGAGCAGTACCGAGCCAAGCCATGGGAGTATTTTGG
GTAA
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Synonyms
Publications