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Properties
| Property Name | Value |
|---|
| TranscriptId | 554840 |
| Track | FilteredModels2 |
| ProteinId | 554754 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:686344..688169 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4813 ID=mRNA_4813|Name=jgi.p|Nanoce1779_2|554754|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
AGATACTGTACAATACTCCTACGCGAAGGCATTAGGTACTGCTGACAGCA
TTCACCACCATGGCCGAGTCCACGCCCACGTCATCCACGACCCTGAACAG
CGATAGAAAAGTCCGGCACCTGGTGCTAGACACGGGTGCGCTGATCAAAG
GCCAGGGGTACAGCTTGGCACGTATGGCGGAGCACTTCTGGACCATCCCA
GAAGTGATTGCCGAGGTGCGTGATCCCCGTGCCCGCTTCCACCTGGACAC
CTTGCCGTTTGAATTGCGCACACGCGAGCCAACTCTACAGGCGTGTAAGG
CCGTGGCAGATTTTGCGAGACAGACGGGGGATTACTCGGCTTTGTCCAAG
GTGGATTTGAGAGTGTTGGCCTTGACGTACACGTTGGAGGAGGAGCATGG
GGGGGATCTTGGGCATTTAAGGAAGACGACAGTAACGCGAATAGCGATCA
TGGCTAATGATAAGGCTCCTGAGACAAAGAAGGAGGGAGAGGATAAGGAG
GAGGAGGAAGGGGCGAAAAATGACGGAGAGCGGGAGGCGGAGGGAGAGGC
GGGGGATGAACGTGTATATGTGGAGGTGGCGGATGAAGATAGCAGCGATG
AGGAAGATGAGGGTGGAGAAGATGAAACTGAAGTGGAAAGTAAAAGCGAG
GGGGAGGAGGAAAAGACGGAGGGCACGCCTGCCATTCCTCTTGCGATTGA
AAAGCTTTCTTTGAGTGAAAAGGAGGATCGCTTTGTTGGGAACCCATTAA
CCACCACAAGGGCGAATGGTGGTGAGGCGACCTCTCGTTTCTTGGGCGGG
GCGGAGGAGGAGGATGATGGGGAGGGTTGGATAAATGGGGATGGCTACAC
GGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGGTGGTGCCGCCAC
CGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATGCAAAATGTTTTG
CTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGTGGCCGTGACAAG
GGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGAAAATTGTGCACG
ATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCTTATCTGTCGCGG
GTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCGCGTGCACTTGAG
CAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGATTCCCAAGGCCC
CCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTGCTGCGCGAGGAT
CAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAGGAGGACAAAGGC
TCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGTTAGGTGTGGCGG
TGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGATATGGACGGAAG
AATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAAGAAGAAGAATAA
GAGTTAG back to topprotein sequence of jgi.p|Nanoce1779_2|554754 >mRNA_4813-protein ID=mRNA_4813-protein|Name=jgi.p|Nanoce1779_2|554754|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MAESTPTSSTTLNSDRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVI
AEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDL
RVLALTYTLEEEHGGDLGHLRKTTVTRIAIMANDKAPETKKEGEDKEEEE
GAKNDGEREAEGEAGDERVYVEVADEDSSDEEDEGGEDETEVESKSEGEE
EKTEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAEE
EDDGEGWINGDGYTGASLGVGGGEGGVVPPPPVVACVTTDFGMQNVLLQM
GLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSI
SVDSETGQLRVHLSKLWRPRRGCKYSIPKAPKGKTGRWEGDMLLREDQLQ
MGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPN
SQRGRERRGKKKNKS* back to topmRNA from alignment at scaffold_9:686344..688169- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4813 ID=mRNA_4813|Name=jgi.p|Nanoce1779_2|554754|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp|location=Sequence derived from alignment at scaffold_9:686344..688169- (Nannochloropsis oceanica)
AGATACTGTACAATACTCCTACGCGAAGGCATTAGGTACTGCTGACAGCA
TTCACCACCATGGCCGAGTCCACGCCCACGTCATCCACGACCCTGAACAG
CGATAGAAAAGTCCGGCACCTGGTGCTAGACACGGGTGCGCTGATCAAAG
GCCAGGGGTACAGCTTGGCACGTATGGCGGAGCACTTCTGGACCATCCCA
GAAGTGATTGCCGAGGTGCGTGATCCCCGTGCCCGCTTCCACCTGGACAC
CTTGCCGTTTGAATTGCGCACACGCGAGCCAACTCTACAGGCGTGTAAGG
CCGTGGCAGATTTTGCGAGACAGACGGGGGATTACTCGGCTTTGTCCAAG
GTGGATTTGAGAGTGTTGGCCTTGACGTACACGTTGGAGGAGGAGCATGG
GGGGGATCTTGGGCATTTAAGGAAGACGACAGTAACGCGAATAGCGATCA
TGGCTAATGATAAGGCTCCTGAGACAAAGAAGGAGGGAGAGGATAAGGAG
GAGGAGGAAGGGGCGAAAAATGACGGAGAGCGGGAGGCGGAGGGAGAGGC
GGGGGATGAACGTGTATATGTGGAGGTGGCGGATGAAGATAGCAGCGATG
AGGAAGATGAGGGTGGAGAAGATGAAACTGAAGTGGAAAGTAAAAGCGAG
GGGGAGGAGGAAAGTAACGAAGCCGCCTTGATCACTACCACTACCACTAC
TACTCCTCCTCCCCCTCCTCCTACTACTACTACTACAACCACAACTACTA
TGGCTGCTGCTTCAATACCCGCTGCAACGACCTGCCCTCCTCCGTCCGCC
GACAGCAGCAGCAGCAATAGTAGCAGCACTATAAAACCCTGTTTTAGCTG
GGCAAATGCCGTGAAAGCGACGGCGTCAAAGCCTCCCCCACCGGCCAACG
CCGTAGCTGCTCGTCGTCAAAAGGAAGCAGAGACGGAGGGCACGCCTGCC
ATTCCTCTTGCGATTGAAAAGCTTTCTTTGAGTGAAAAGGAGGATCGCTT
TGTTGGGAACCCATTAACCACCACAAGGGCGAATGGTGGTGAGGCGACCT
CTCGTTTCTTGGGCGGGGCGGGTCGAGAGGCAGCGACGCAAGGACATGGA
GGGGGAGGGCAAGAGGAGGAGGATGATGGGGAGGGTTGGATAAATGTGGA
GAACATCAAGGCAGTTCGGGCCAAGGGGACGGAGAGCTTGTTTGGAGCAA
GAAAGGGGGATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAG
GGAGGGGTGGTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTT
TGGAATGCAAAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCG
ATGGTGTGGCCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGT
TGCGCGAAAATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGG
GAATGCTTATCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCC
AGTTGCGCGTGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAG
TACTCGATTCCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGA
CATGTTGCTGCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGG
TCAAGAGGAGGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACC
GAGACGTTAGGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCA
GTATGGATATGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGC
GGGGAAAGAAGAAGAATAAGAGTTAG back to topCoding sequence (CDS) from alignment at scaffold_9:686344..688169- >mRNA_4813 ID=mRNA_4813|Name=jgi.p|Nanoce1779_2|554754|organism=Nannochloropsis oceanica|type=CDS|length=5592bp|location=Sequence derived from alignment at scaffold_9:686344..688169- (Nannochloropsis oceanica)
GGGGATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGG
GGTGGTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAA
TGCAAAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGT
GTGGCCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGC
GAAAATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATG
CTTATCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTG
CGCGTGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTC
GATTCCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGT
TGCTGCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAG
AGGAGGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGAC
GTTAGGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATG
GATATGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGA
AAGAAGAAGAATAAGAGTTAGAGGAGGAGGATGATGGGGAGGGTTGGATA
AATAGACGGAGGGCACGCCTGCCATTCCTCTTGCGATTGAAAAGCTTTCT
TTGAGTGAAAAGGAGGATCGCTTTGTTGGGAACCCATTAACCACCACAAG
GGCGAATGGTGGTGAGGCGACCTCTCGTTTCTTGGGCGGGGCGGATGGCC
GAGTCCACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAAAGTCCG
GCACCTGGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGTACAGCT
TGGCACGTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATTGCCGAG
GTGCGTGATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTTTGAATT
GCGCACACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAGATTTTG
CGAGACAGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTGAGAGTG
TTGGCCTTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCTTGGGCA
TTTAAGGAAGACGACAGTAACGCGAATAGCGATCATGGCTAATGATAAGG
CTCCTGAGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAAGGGGCG
AAAAATGACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGAACGTGT
ATATGTGGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATGAGGGTG
GAGAAGATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAGGAAAGG
GGATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGG
TGGTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATG
CAAAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGT
GGCCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGA
AAATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCT
TATCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCG
CGTGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGA
TTCCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTG
CTGCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAG
GAGGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGT
TAGGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGA
TATGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAA
GAAGAAGAATAAGAGTTAGAGGAGGAGGATGATGGGGAGGGTTGGATAAA
TAGACGGAGGGCACGCCTGCCATTCCTCTTGCGATTGAAAAGCTTTCTTT
GAGTGAAAAGGAGGATCGCTTTGTTGGGAACCCATTAACCACCACAAGGG
CGAATGGTGGTGAGGCGACCTCTCGTTTCTTGGGCGGGGCGGATGGCCGA
GTCCACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAAAGTCCGGC
ACCTGGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGTACAGCTTG
GCACGTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATTGCCGAGGT
GCGTGATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTTTGAATTGC
GCACACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAGATTTTGCG
AGACAGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTGAGAGTGTT
GGCCTTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCTTGGGCATT
TAAGGAAGACGACAGTAACGCGAATAGCGATCATGGCTAATGATAAGGCT
CCTGAGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAAGGGGCGAA
AAATGACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGAACGTGTAT
ATGTGGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATGAGGGTGGA
GAAGATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAGGAAAGGGG
ATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGGTG
GTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATGCA
AAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGTGG
CCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGAAA
ATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCTTA
TCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCGCG
TGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGATT
CCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTGCT
GCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAGGA
GGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGTTA
GGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGATA
TGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAAGA
AGAAGAATAAGAGTTAGAGGAGGAGGATGATGGGGAGGGTTGGATAAATA
GACGGAGGGCACGCCTGCCATTCCTCTTGCGATTGAAAAGCTTTCTTTGA
GTGAAAAGGAGGATCGCTTTGTTGGGAACCCATTAACCACCACAAGGGCG
AATGGTGGTGAGGCGACCTCTCGTTTCTTGGGCGGGGCGGATGGCCGAGT
CCACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAAAGTCCGGCAC
CTGGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGTACAGCTTGGC
ACGTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATTGCCGAGGTGC
GTGATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTTTGAATTGCGC
ACACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAGATTTTGCGAG
ACAGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTGAGAGTGTTGG
CCTTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCTTGGGCATTTA
AGGAAGACGACAGTAACGCGAATAGCGATCATGGCTAATGATAAGGCTCC
TGAGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAAGGGGCGAAAA
ATGACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGAACGTGTATAT
GTGGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATGAGGGTGGAGA
AGATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAGGAAAGGGGAT
GGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGGTGGT
GCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATGCAAA
ATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGTGGCC
GTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGAAAAT
TGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCTTATC
TGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCGCGTG
CACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGATTCC
CAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTGCTGC
GCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAGGAGG
ACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGTTAGG
TGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGATATG
GACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAAGAAG
AAGAATAAGAGTTAGAGGAGGAGGATGATGGGGAGGGTTGGATAAATAGA
CGGAGGGCACGCCTGCCATTCCTCTTGCGATTGAAAAGCTTTCTTTGAGT
GAAAAGGAGGATCGCTTTGTTGGGAACCCATTAACCACCACAAGGGCGAA
TGGTGGTGAGGCGACCTCTCGTTTCTTGGGCGGGGCGGATGGCCGAGTCC
ACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAAAGTCCGGCACCT
GGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGTACAGCTTGGCAC
GTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATTGCCGAGGTGCGT
GATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTTTGAATTGCGCAC
ACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAGATTTTGCGAGAC
AGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTGAGAGTGTTGGCC
TTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCTTGGGCATTTAAG
GAAGACGACAGTAACGCGAATAGCGATCATGGCTAATGATAAGGCTCCTG
AGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAAGGGGCGAAAAAT
GACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGAACGTGTATATGT
GGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATGAGGGTGGAGAAG
ATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAGGAAA back to top
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