jgi.p|Nanoce1779_2|527694, mRNA_4810 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527694
Unique NamemRNA_4810
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1029
Alignment locationscaffold_9:677622..678650 +

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Properties
Property NameValue
TranscriptId527780
TrackFilteredModels2
ProteinId527694
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:677622..678650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527694gene_4810Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527694mRNA_4810-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4810CDS_4810Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4810 ID=mRNA_4810|Name=jgi.p|Nanoce1779_2|527694|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
ATGAAGCACCATTGGGAAAAGGACGACGATGAAGGTGAAGGGGAAGGCCG
CTTGCCTAACCACAAACGGCGACTCTCCATCTCCTCTTCCAATGCCTTAG
AAAATTTTGAGTGTTTTCAAGACGTTGTGAAGAGCAAGCGCGTTGTCGTC
CTTCTTGACTACGACGGCACCCTCACCCCTATCGTTAATGACCCTGCCAA
AGCCCATCTCCCCACGGGCACTCGGGACATTCTCGTCGAGCTTGCCGAAC
GCTGCGTGGTGGGTATTGTCTCTGGGCGGTCGTTGCCAAAGGTCAAAGGC
TTCGTCCAGGTGCCGTCGCTTTTTTATGCAGGCTCGCACGGGTTTGACAT
ATGGGGACCGACAACTGAGTCGATGAGGTACCAGGTAGCCGCGGATCAGC
TGCCGCATCTCGCGACTTTGAGAGACAGTTTGACTGAAAAATTGTCGGGC
ATAACTGGGGCGGCAGTGGAGGACAATTTATTCAGTGTCTCGGTGCACTA
CCGAAATTGTGCGCCCGATGACGTCCCGGCCGTTTACGAGGCAGTGCAAG
CGGCTCGCCAGGGGTTTCCGGGTATTCGATTCGGGACGGGGAAGTGTGTG
TTTGAGCTGCGTCCCGATATTACGTGGGACAAGGGAAAGGCAATGGTGTG
GTTGCTGCAGGCGCTGGGGTTGTGGGAGGAGGAGGACGTATTTGCGATCT
ATATTGGGGACGACACGACGGATGAGGATGCGTTTCAAATCTTCAACAGG
GAGGCTCGGGCGGATGGAGTGGGCATTGTGGTTACGGCGGAGAATAAATT
GACGGGGGCGAAGTACAGTTTAAGAAATCCGGAGGAAGTAGCGGTGTTTT
TGTCGAGGTTGGTAGAGACGAGAGGGCACGTGGAGGCGGGTCAAGCCGGA
AACAGAAGTGTGAAGGACGTGAAATTGGACCTAGCACGACCGGCGTTGGA
AGGAGCGTTTGAGAGACAATGCGAGTGGGAGGAGAAGAAGGTGGGGGGGG
AGGGAGGGAAGGAGGAGGGGAATGTGTAA
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protein sequence of jgi.p|Nanoce1779_2|527694

>mRNA_4810-protein ID=mRNA_4810-protein|Name=jgi.p|Nanoce1779_2|527694|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MKHHWEKDDDEGEGEGRLPNHKRRLSISSSNALENFECFQDVVKSKRVVV
LLDYDGTLTPIVNDPAKAHLPTGTRDILVELAERCVVGIVSGRSLPKVKG
FVQVPSLFYAGSHGFDIWGPTTESMRYQVAADQLPHLATLRDSLTEKLSG
ITGAAVEDNLFSVSVHYRNCAPDDVPAVYEAVQAARQGFPGIRFGTGKCV
FELRPDITWDKGKAMVWLLQALGLWEEEDVFAIYIGDDTTDEDAFQIFNR
EARADGVGIVVTAENKLTGAKYSLRNPEEVAVFLSRLVETRGHVEAGQAG
NRSVKDVKLDLARPALEGAFERQCEWEEKKVGGEGGKEEGNV*
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mRNA from alignment at scaffold_9:677622..678650+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4810 ID=mRNA_4810|Name=jgi.p|Nanoce1779_2|527694|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp|location=Sequence derived from alignment at scaffold_9:677622..678650+ (Nannochloropsis oceanica)
ATGAAGCACCATTGGGAAAAGGACGACGATGAAGGTGAAGGGGAAGGCCG
CTTGCCTAACCACAAACGGCGACTCTCCATCTCCTCTTCCAATGCCTTAG
AAAATTTTGAGTGTTTTCAAGACGTTGTGAAGAGCAAGCGCGTTGTCGTC
CTTCTTGACTACGACGGCACCCTCACCCCTATCGTTAATGACCCTGCCAA
AGCCCATCTCCCCACGGGCACTCGGGACATTCTCGTCGAGCTTGCCGAAC
GCTGCGTGGTGGGTATTGTCTCTGGGCGGTCGTTGCCAAAGGTCAAAGGC
TTCGTCCAGGTGCCGTCGCTTTTTTATGCAGGCTCGCACGGGTTTGACAT
ATGGGGACCGACAACTGAGTCGATGAGGTACCAGGTAGCCGCGGATCAGC
TGCCGCATCTCGCGACTTTGAGAGACAGTTTGACTGAAAAATTGTCGGGC
ATAACTGGGGCGGCAGTGGAGGACAATTTATTCAGTGTCTCGGTGCACTA
CCGAAATTGTGCGCCCGATGACGTCCCGGCCGTTTACGAGGCAGTGCAAG
CGGCTCGCCAGGGGTTTCCGGGTATTCGATTCGGGACGGGGAAGTGTGTG
TTTGAGCTGCGTCCCGATATTACGTGGGACAAGGGAAAGGCAATGGTGTG
GTTGCTGCAGGCGCTGGGGTTGTGGGAGGAGGAGGACGTATTTGCGATCT
ATATTGGGGACGACACGACGGATGAGGATGCGTTTCAAATCTTCAACAGG
GAGGCTCGGGCGGATGGAGTGGGCATTGTGGTTACGGCGGAGAATAAATT
GACGGGGGCGAAGTACAGTTTAAGAAATCCGGAGGAAGTAGCGGTGTTTT
TGTCGAGGTTGGTAGAGACGAGAGGGCACGTGGAGGCGGGTCAAGCCGGA
AACAGAAGTGTGAAGGACGTGAAATTGGACCTAGCACGACCGGCGTTGGA
AGGAGCGTTTGAGAGACAATGCGAGTGGGAGGAGAAGAAGGTGGGGGGGG
AGGGAGGGAAGGAGGAGGGGAATGTGTAA
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Coding sequence (CDS) from alignment at scaffold_9:677622..678650+

>mRNA_4810 ID=mRNA_4810|Name=jgi.p|Nanoce1779_2|527694|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at scaffold_9:677622..678650+ (Nannochloropsis oceanica)
ATGAAGCACCATTGGGAAAAGGACGACGATGAAGGTGAAGGGGAAGGCCG
CTTGCCTAACCACAAACGGCGACTCTCCATCTCCTCTTCCAATGCCTTAG
AAAATTTTGAGTGTTTTCAAGACGTTGTGAAGAGCAAGCGCGTTGTCGTC
CTTCTTGACTACGACGGCACCCTCACCCCTATCGTTAATGACCCTGCCAA
AGCCCATCTCCCCACGGGCACTCGGGACATTCTCGTCGAGCTTGCCGAAC
GCTGCGTGGTGGGTATTGTCTCTGGGCGGTCGTTGCCAAAGGTCAAAGGC
TTCGTCCAGGTGCCGTCGCTTTTTTATGCAGGCTCGCACGGGTTTGACAT
ATGGGGACCGACAACTGAGTCGATGAGGTACCAGGTAGCCGCGGATCAGC
TGCCGCATCTCGCGACTTTGAGAGACAGTTTGACTGAAAAATTGTCGGGC
ATAACTGGGGCGGCAGTGGAGGACAATTTATTCAGTGTCTCGGTGCACTA
CCGAAATTGTGCGCCCGATGACGTCCCGGCCGTTTACGAGGCAGTGCAAG
CGGCTCGCCAGGGGTTTCCGGGTATTCGATTCGGGACGGGGAAGTGTGTG
TTTGAGCTGCGTCCCGATATTACGTGGGACAAGGGAAAGGCAATGGTGTG
GTTGCTGCAGGCGCTGGGGTTGTGGGAGGAGGAGGACGTATTTGCGATCT
ATATTGGGGACGACACGACGGATGAGGATGCGTTTCAAATCTTCAACAGG
GAGGCTCGGGCGGATGGAGTGGGCATTGTGGTTACGGCGGAGAATAAATT
GACGGGGGCGAAGTACAGTTTAAGAAATCCGGAGGAAGTAGCGGTGTTTT
TGTCGAGGTTGGTAGAGACGAGAGGGCACGTGGAGGCGGGTCAAGCCGGA
AACAGAAGTGTGAAGGACGTGAAATTGGACCTAGCACGACCGGCGTTGGA
AGGAGCGTTTGAGAGACAATGCGAGTGGGAGGAGAAGAAGGTGGGGGGGG
AGGGAGGGAAGGAGGAGGGGAATGTGTAA
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Synonyms
Publications