jgi.p|Nanoce1779_2|243374, mRNA_481 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|243374
Unique NamemRNA_481
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length783
Alignment locationscaffold_3:1169882..1170664 -

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Properties
Property NameValue
TranscriptId243460
TrackFilteredModels2
ProteinId243374
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1169882..1170664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243374gene_481Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243374mRNA_481-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_481CDS_481Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_481 ID=mRNA_481|Name=jgi.p|Nanoce1779_2|243374|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
GCGTGAGCTTGCGGACTGATGCAACTTCGTGAAGCTGGTGAGGTGTACGA
GAGGCGGGGGTGAGACAACGCCTGCAACACCATGAAAGACGAAGAAAGTG
GTGTGGCTTTCATCACAGGGGGGGCCTCACGTAAGGAATTTGCCTCCCGT
TCAAATTGCTGCGCTGTCCTCCTCCCGGCTCTACACCCCTCTTGCTGCAC
TGAGGGAGCCACGGCGGGAGGCATGCATCCCCTTCCATGTGCAGCATTTG
ATGAGTGCTTATGGCCGACTGCTGTTTCTTTTGCTCGCAACTAGCATCGA
CCACCCAGCCAACACCCACGGCTTTAGCGAAGCCCTGCTCATGGTGTCGA
CGGAAAAGAAGGCAGAGACTGACGGGCACTATTTGGACTTGTCATCACAT
CCCATACTAATCAGAAATCACGCCCCTGCCTTGACATTCTTCTACACATG
CATAGGTGCCAGCGGGAGACGGCTGCCACGTGGGGGAGAAGGCAAAACCA
CAAGGCACCGAAGGAAGGAGGACACGGAAGGTCTCCTAGCCTCGTGGGTC
CCGCTTCTTTTTCGTGTTGTTTGTGGCTCCACACGACGCGGACAACAACG
CACCAGTCAGCCCTATTGCAGCAGGGCAGGATTAGGCGCAGTAGTGAGCT
GAGTGTTTTGAGAACTCCGACGCGGGGGCTTTAAAGAAGCTGTTTTTTTG
TGGCCAGATTCTGCGGTGCAGCACACGCTGAAGATCCTCTTTTTTCGACT
GCAGCCGGGAGGCAGGCATCTAGCGAAGATTGT
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protein sequence of jgi.p|Nanoce1779_2|243374

>mRNA_481-protein ID=mRNA_481-protein|Name=jgi.p|Nanoce1779_2|243374|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSAYGRLLFLLLATSIDHPANTHGFSEALLMVSTEKKAETDGHYLDLSSH
PILIRNHAPALTFFYTCIGASGRRLPRGGEGKTTRHRRKEDTEGLLASWV
PLLFRVVCGSTRRGQQRTSQPYCSRAGLGAVVS*
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mRNA from alignment at scaffold_3:1169882..1170664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_481 ID=mRNA_481|Name=jgi.p|Nanoce1779_2|243374|organism=Nannochloropsis oceanica|type=mRNA|length=783bp|location=Sequence derived from alignment at scaffold_3:1169882..1170664- (Nannochloropsis oceanica)
GCGTGAGCTTGCGGACTGATGCAACTTCGTGAAGCTGGTGAGGTGTACGA
GAGGCGGGGGTGAGACAACGCCTGCAACACCATGAAAGACGAAGAAAGTG
GTGTGGCTTTCATCACAGGGGGGGCCTCACGTAAGGAATTTGCCTCCCGT
TCAAATTGCTGCGCTGTCCTCCTCCCGGCTCTACACCCCTCTTGCTGCAC
TGAGGGAGCCACGGCGGGAGGCATGCATCCCCTTCCATGTGCAGCATTTG
ATGAGTGCTTATGGCCGACTGCTGTTTCTTTTGCTCGCAACTAGCATCGA
CCACCCAGCCAACACCCACGGCTTTAGCGAAGCCCTGCTCATGGTGTCGA
CGGAAAAGAAGGCAGAGACTGACGGGCACTATTTGGACTTGTCATCACAT
CCCATACTAATCAGAAATCACGCCCCTGCCTTGACATTCTTCTACACATG
CATAGGTGCCAGCGGGAGACGGCTGCCACGTGGGGGAGAAGGCAAAACCA
CAAGGCACCGAAGGAAGGAGGACACGGAAGGTCTCCTAGCCTCGTGGGTC
CCGCTTCTTTTTCGTGTTGTTTGTGGCTCCACACGACGCGGACAACAACG
CACCAGTCAGCCCTATTGCAGCAGGGCAGGATTAGGCGCAGTAGTGAGCT
GAGTGTTTTGAGAACTCCGACGCGGGGGCTTTAAAGAAGCTGTTTTTTTG
TGGCCAGATTCTGCGGTGCAGCACACGCTGAAGATCCTCTTTTTTCGACT
GCAGCCGGGAGGCAGGCATCTAGCGAAGATTGT
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Coding sequence (CDS) from alignment at scaffold_3:1169882..1170664-

>mRNA_481 ID=mRNA_481|Name=jgi.p|Nanoce1779_2|243374|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_3:1169882..1170664- (Nannochloropsis oceanica)
ATGAGTGCTTATGGCCGACTGCTGTTTCTTTTGCTCGCAACTAGCATCGA
CCACCCAGCCAACACCCACGGCTTTAGCGAAGCCCTGCTCATGGTGTCGA
CGGAAAAGAAGGCAGAGACTGACGGGCACTATTTGGACTTGTCATCACAT
CCCATACTAATCAGAAATCACGCCCCTGCCTTGACATTCTTCTACACATG
CATAGGTGCCAGCGGGAGACGGCTGCCACGTGGGGGAGAAGGCAAAACCA
CAAGGCACCGAAGGAAGGAGGACACGGAAGGTCTCCTAGCCTCGTGGGTC
CCGCTTCTTTTTCGTGTTGTTTGTGGCTCCACACGACGCGGACAACAACG
CACCAGTCAGCCCTATTGCAGCAGGGCAGGATTAGGCGCAGTAGTGAGCT
GA
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Synonyms
Publications