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Properties
| Property Name | Value |
|---|
| TranscriptId | 630110 |
| Track | FilteredModels2 |
| ProteinId | 630024 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:673408..676190 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4809 ID=mRNA_4809|Name=jgi.p|Nanoce1779_2|630024|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp
GTTCATTGCTTCCCGCTCCTGTTCCCAAAGGAGCGATCTCAACTTCCGAT
CTCCTCGTTCTACTCAAATTTTACAAGAGGTACAAGGCAACAAATTGTGG
ATTTTTGATAACGATTATCGCGAGCATGCGTCATAGTGGAAAAGTGGCGG
GAGGACAGATTCCTCAAATTCATAGGGGTGATGACGTCGGCGAAGTGAGG
TCAGCGCTCATCATGAAAGTATACTTAAAGTTAAATATAATGTGAGCTCG
ACATGACACAACCACGCTGCCAGCCCGATCCGACCAGTTTAGAGGCAGTT
AGAGATAGGCAGGACGAGCAGATTCTATAAACATCACGCAATTGCTTATT
CAAACTTTGGCCTCCCCTCCTCCTCCCCCGTGGATGACGCAACACTCTTT
CACGTCTATAAACACAGGAGCAGGCGTCGGCCTGTTCAGTCACCATGCCA
CCAACGTATCAATAGTTCGCCTTCTTTTCTGGCGTCATCATGGCGATCAA
CAACAGCAGCTGGGTCGGCCGCCAGAGACAGTCCCTCCTTGCCTCCTTCC
GCTTCCCGAAGACCCGCCTCAGCATGGACATTCTCCTTTCCTGCATCGGG
GGCTTTAGCACGGCGTACAACATTGTCAACATTTCGCTGGTCTTGGTGCT
GATGGATGGGGTTTATCCTTTGTCCGAAACTCACAAGAGTTTGTGTGCCT
CGACCATGTTTGCGGGCATGATCGCCGGGCAGCTTCTAGGTGGCTTGCTT
GGGGATGCCTTGGGCCTCTCGCGTGCGTTCAAATTCATCATGCTGCTGCA
AGTCGCAGGAGCTATGGGGAGCACATTGGTGTTTCCACCTCAGATTTATT
GGAAGCTGGCAGTGGCGAGGTTCTTCTTGGGGGTGGGGGCAGGAGACGAT
GTGGTGGAAGACGCCACTGCGGCAGGAGCTGGGGAGGACGCCGAGGCGGC
CCTCACCCTCTCCTCCCTCCCTTCTTTGCCTTTGCAGGGGGAAGAACAAG
TTGGGGTGGGAGCATGGGCGGCGGGTGAGCATGTTTGGCTCGCATTGAGC
GACACGGGTTTGAGGCGGCGTTTGCTCGGATGCAGCCTAACATGGTTCTT
GTATGATGTCTGTTTTTTTGGTAATACCCTGTTTCAGCCCGTGATAGGGA
CGATATTGTTTGGCAAGGGAGGAGAGAATAAGGAGGGAGGGGAGGGGAGT
GGTTGGAGCAGTGGAGGTGGTAGTAGCGGGTTCTGGAGAAGCAGCAGCAG
CAGCATTGGGAATGAGGTGGACTACCGCGCGACTTTCCGGACGGATAGCC
AGACAAGTTTGATCTTGTCACTCATTGCCCTACCTGGATACTTTCTCTCT
GTCCTTTTTATCACGCGCCTGGGCCCGCGCTATATCCAAACGCAGGGATT
CTTGGTATGTGCTCTTCTCTACCTCCTCCTGGCTTGTACAGGCGAACGCT
TGGCAAACTCAGGACAAGGGTGGGTAGCCGTCATCCTGTTCGGCCTCAGC
TTTACCTTCTTTAATTTTGGACCAGGATCAACCACGTATTTATACCCTTC
CAGATTATTCCCTAGGGACGTCAAGGCGTCTTTGAATGGCGTGGCGGCGG
CTGCGGGGAAGGTGGGTGGGTGGGTGGGTGGGTACTTCTTTCCTCCCTTG
TTGGATTCGTGGGGGTTAGAGGTTGTGTTGGCCATGTGTGCGACGATTGC
GTTGGTGGGTGCTGGGGTGACAGTTGGGATGTTGGAGACGGATGTGAAGG
GAATAGGAATGAGGGGGGAGGACGAGGGGATGGAGGAGAATCGGGGAGGG
AGGGGAGATGGAGAGGAGGAGGAGGAGGTTGGGGGGTCAATGCTGCGGCT
GTTGCCCGATGATGAGGAGTATGAGGAGGAGGCGAGGGAGAAGATCACAA
CGGTGTAATATATCGACAAGAGTGTATGCAGAACTGCGTGTATGCGGGAG
TTGGGACGGGAGGAGGGGGAATGGTTTTTGTATTTATGCGATTTCCCGAA
AAGAGCGAAAGGCCATGGGTAAAAGCAATGTCTTATCGTGAT back to topprotein sequence of jgi.p|Nanoce1779_2|630024 >mRNA_4809-protein ID=mRNA_4809-protein|Name=jgi.p|Nanoce1779_2|630024|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MAINNSSWVGRQRQSLLASFRFPKTRLSMDILLSCIGGFSTAYNIVNISL
VLVLMDGVYPLSETHKSLCASTMFAGMIAGQLLGGLLGDALGLSRAFKFI
MLLQVAGAMGSTLVFPPQIYWKLAVARFFLGVGAGDDVVEDATAAGAGED
AEAALTLSSLPSLPLQGEEQVGVGAWAAGEHVWLALSDTGLRRRLLGCSL
TWFLYDVCFFGNTLFQPVIGTILFGKGGENKEGGEGSGWSSGGGSSGFWR
SSSSSIGNEVDYRATFRTDSQTSLILSLIALPGYFLSVLFITRLGPRYIQ
TQGFLVCALLYLLLACTGERLANSGQGWVAVILFGLSFTFFNFGPGSTTY
LYPSRLFPRDVKASLNGVAAAAGKVGGWVGGYFFPPLLDSWGLEVVLAMC
ATIALVGAGVTVGMLETDVKGIGMRGEDEGMEENRGGRGDGEEEEEVGGS
MLRLLPDDEEYEEEAREKITTV* back to topmRNA from alignment at scaffold_9:673408..676190- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4809 ID=mRNA_4809|Name=jgi.p|Nanoce1779_2|630024|organism=Nannochloropsis oceanica|type=mRNA|length=2783bp|location=Sequence derived from alignment at scaffold_9:673408..676190- (Nannochloropsis oceanica)
GTTCATTGCTTCCCGCTCCTGTTCCCAAAGGAGCGATCTCAACTTCCGAT
CTCCTCGTTCTACTCAAATTTTACAAGAGGTACAAGGCAACAAATTGTGG
ATTTTTGATAACGATTATCGCGAGCATGCGTCATAGTGGAAAAGTGGCGG
GAGGACAGATTCCTCAAATTCATAGGGGTGATGACGTCGGCGAAGTGAGG
TCAGCGCTCATCATGAAAGTATACTTAAAGTTAAATATAATGTGAGCTCG
ACATGACACAACCACGCTGCCAGCCCGATCCGACCAGTTTAGAGGCAGTT
AGAGATAGGCAGGACGAGCAGATTCTATAAACATCACGCAATTGCTTATT
CAAACTTTGGCCTCCCCTCCTCCTCCCCCGTGGATGACGCAACACTCTTT
CACGTCTATAAACACAGGAGCAGGCGTCGGCCTGTTCAGTCACCATGCCA
CCAACGTATCAATAGTTCGCCTTCTTTTCTGGCGTCATCATGGCGATCAA
CAACAGCAGCTGGGTCGGCCGCCAGAGACAGTCCCTCCTTGCCTCCTTCC
GCTTCCCGAAGACCCGCCTCAGCATGGACATTCTCCTTTCCTGCATCGGG
GGCTTTAGCACGGCGTACAACATTGTCAACATTTCGCTGGTCTTGGTGCT
GATGGATGGGGTTTATCCTTTGTCCGAAACTCACAAGAGTTTGTGTGCCT
CGACCATGTTTGCGGGTATGTGCCTGTCCTATTGTGAATGCGGTTGACTT
TTCTTGTTCGCACTTTCTCCTGTTTGGTGTCGTGTGATGACTTCCTGATC
GCATGGTTCTATCTTCCACCTTTCTTTTGATGTTGGCTGATTCGCCCATC
TTCCTCTCATCCTTCGCTCTTTCCATTTCCGTCTCTCTTCCCTCCCATTA
GGCATGATCGCCGGGCAGCTTCTAGGTGGCTTGCTTGGGGATGCCTTGGG
CCTCTCGCGTGCGTTCAAATTCATCATGCTGCTGCAAGTCGCAGGAGCTA
TGGGGAGCACATTGGTGTTTCCACCTCAGATTTATTGGAAGCTGGCAGTG
GCGAGGTTCTTCTTGGGGGTGGGGGCAGGAGGTGTTTATCCGTTGGCGGC
CGCTATGTCTTCAAACGCGTCTTCGTCGTCGTCGTCCTCTTCGTCCTCGT
CCTCTTTAAGCAGCAATCACAACAACAACAACAACAGCAACAGAAGTAGT
AGTAGTGATCGGATGGTTGCTCTCGTATTTTCTTCGCAGGGTGTGGCGTT
TGTTTCATATAATGCACTCGCCCTCCTTCTAGCCTACTGCCTACCTCTCC
ACCCCTCCTCCCCCTCCTTCTCTTCCTTTGTCTCCACAACCGCCATCACC
TCCCACCCGTCCGACAAATTCTTTCCGCTCCAGGTCACCAACAGCAGTAG
CAACGGCAGCGGCAGCAACAGCCATAGCAGCAATAGTACGAGTAAGGGGG
ATCAGGCCGTCTTCCGCTTCCTCCTTGGCTTCGGTGCTCTCCCGGGCCTA
CTCATCCTTCTCCTGGGATGGGTCACGCATTGCCGTCGTCGTCGCCGCGA
TGGAGCGGAGAATAGAGGAAGGGGGGGACGAGGAAGACAAATGTGGGGTC
GTCCGAAACCCCCCCGCCCTTCCCTATCCCTCCTAGACGATGTGGTGGAA
GACGCCACTGCGGCAGGAGCTGGGGAGGACGCCGAGGCGGCCCTCACCCT
CTCCTCCCTCCCTTCTTTGCCTTTGCAGGGGGAAGAACAAGTTGGGGTGG
GAGCATGGGCGGCGGGTGAGCATGTTTGGCTCGCATTGAGCGACACGGGT
TTGAGGCGGCGTTTGCTCGGATGCAGCCTAACATGGTTCTTGTATGATGT
CTGTTTTTTTGGTAATACCCTGTTTCAGCCCGTGATAGGGACGATATTGT
TTGGCAAGGGAGGAGAGAATAAGGAGGGAGGGGAGGGGAGTGGTTGGAGC
AGTGGAGGTGGTAGTAGCGGGTTCTGGAGAAGCAGCAGCAGCAGCATTGG
GAATGAGGTGGACTACCGCGCGACTTTCCGGACGGATAGCCAGACAAGTT
TGATCTTGTCACTCATTGCCCTACCTGGATACTTTCTCTCTGTCCTTTTT
ATCACGCGCCTGGGCCCGCGCTATATCCAAACGCAGGGATTCTTGGTATG
TGCTCTTCTCTACCTCCTCCTGGCTTGTACAGGCGAACGCTTGGCAAACT
CAGGACAAGGGTGGGTAGCCGTCATCCTGTTCGGCCTCAGCTTTACCTTC
TTTAATTTTGGACCAGGATCAACCACGTATTTATACCCTTCCAGATTATT
CCCTAGGGACGTCAAGGCGTCTTTGAATGGCGTGGCGGCGGCTGCGGGGA
AGGTGGGTGGGTGGGTGGGTGGGTACTTCTTTCCTCCCTTGTTGGATTCG
TGGGGGTTAGAGGTTGTGTTGGCCATGTGTGCGACGATTGCGTTGGTGGG
TGCTGGGGTGACAGTTGGGATGTTGGAGACGGATGTGAAGGGAATAGGAA
TGAGGGGGGAGGACGAGGGGATGGAGGAGAATCGGGGAGGGAGGGGAGAT
GGAGAGGAGGAGGAGGAGGTTGGGGGGTCAATGCTGCGGCTGTTGCCCGA
TGATGAGGAGTATGAGGAGGAGGCGAGGGAGAAGATCACAACGGTGTAAT
ATATCGACAAGAGTGTATGCAGAACTGCGTGTATGCGGGAGTTGGGACGG
GAGGAGGGGGAATGGTTTTTGTATTTATGCGATTTCCCGAAAAGAGCGAA
AGGCCATGGGTAAAAGCAATGTCTTATCGTGAT back to topCoding sequence (CDS) from alignment at scaffold_9:673408..676190- >mRNA_4809 ID=mRNA_4809|Name=jgi.p|Nanoce1779_2|630024|organism=Nannochloropsis oceanica|type=CDS|length=4257bp|location=Sequence derived from alignment at scaffold_9:673408..676190- (Nannochloropsis oceanica)
ACGATGTGGTGGAAGACGCCACTGCGGCAGGAGCTGGGGAGGACGCCGAG
GCGGCCCTCACCCTCTCCTCCCTCCCTTCTTTGCCTTTGCAGGGGGAAGA
ACAAGTTGGGGTGGGAGCATGGGCGGCGGGTGAGCATGTTTGGCTCGCAT
TGAGCGACACGGGTTTGAGGCGGCGTTTGCTCGGATGCAGCCTAACATGG
TTCTTGTATGATGTCTGTTTTTTTGGTAATACCCTGTTTCAGCCCGTGAT
AGGGACGATATTGTTTGGCAAGGGAGGAGAGAATAAGGAGGGAGGGGAGG
GGAGTGGTTGGAGCAGTGGAGGTGGTAGTAGCGGGTTCTGGAGAAGCAGC
AGCAGCAGCATTGGGAATGAGGTGGACTACCGCGCGACTTTCCGGACGGA
TAGCCAGACAAGTTTGATCTTGTCACTCATTGCCCTACCTGGATACTTTC
TCTCTGTCCTTTTTATCACGCGCCTGGGCCCGCGCTATATCCAAACGCAG
GGATTCTTGGTATGTGCTCTTCTCTACCTCCTCCTGGCTTGTACAGGCGA
ACGCTTGGCAAACTCAGGACAAGGGTGGGTAGCCGTCATCCTGTTCGGCC
TCAGCTTTACCTTCTTTAATTTTGGACCAGGATCAACCACGTATTTATAC
CCTTCCAGATTATTCCCTAGGGACGTCAAGGCGTCTTTGAATGGCGTGGC
GGCGGCTGCGGGGAAGGTGGGTGGGTGGGTGGGTGGGTACTTCTTTCCTC
CCTTGTTGGATTCGTGGGGGTTAGAGGTTGTGTTGGCCATGTGTGCGACG
ATTGCGTTGGTGGGTGCTGGGGTGACAGTTGGGATGTTGGAGACGGATGT
GAAGGGAATAGGAATGAGGGGGGAGGACGAGGGGATGGAGGAGAATCGGG
GAGGGAGGGGAGATGGAGAGGAGGAGGAGGAGGTTGGGGGGTCAATGCTG
CGGCTGTTGCCCGATGATGAGGAGTATGAGGAGGAGGCGAGGGAGAAGAT
CACAACGGTGTAAGCATGATCGCCGGGCAGCTTCTAGGTGGCTTGCTTGG
GGATGCCTTGGGCCTCTCGCGTGCGTTCAAATTCATCATGCTGCTGCAAG
TCGCAGGAGCTATGGGGAGCACATTGGTGTTTCCACCTCAGATTTATTGG
AAGCTGGCAGTGGCGAGGTTCTTCTTGGGGGTGGGGGCAGGAGATGGCGA
TCAACAACAGCAGCTGGGTCGGCCGCCAGAGACAGTCCCTCCTTGCCTCC
TTCCGCTTCCCGAAGACCCGCCTCAGCATGGACATTCTCCTTTCCTGCAT
CGGGGGCTTTAGCACGGCGTACAACATTGTCAACATTTCGCTGGTCTTGG
TGCTGATGGATGGGGTTTATCCTTTGTCCGAAACTCACAAGAGTTTGTGT
GCCTCGACCATGTTTGCGGACGATGTGGTGGAAGACGCCACTGCGGCAGG
AGCTGGGGAGGACGCCGAGGCGGCCCTCACCCTCTCCTCCCTCCCTTCTT
TGCCTTTGCAGGGGGAAGAACAAGTTGGGGTGGGAGCATGGGCGGCGGGT
GAGCATGTTTGGCTCGCATTGAGCGACACGGGTTTGAGGCGGCGTTTGCT
CGGATGCAGCCTAACATGGTTCTTGTATGATGTCTGTTTTTTTGGTAATA
CCCTGTTTCAGCCCGTGATAGGGACGATATTGTTTGGCAAGGGAGGAGAG
AATAAGGAGGGAGGGGAGGGGAGTGGTTGGAGCAGTGGAGGTGGTAGTAG
CGGGTTCTGGAGAAGCAGCAGCAGCAGCATTGGGAATGAGGTGGACTACC
GCGCGACTTTCCGGACGGATAGCCAGACAAGTTTGATCTTGTCACTCATT
GCCCTACCTGGATACTTTCTCTCTGTCCTTTTTATCACGCGCCTGGGCCC
GCGCTATATCCAAACGCAGGGATTCTTGGTATGTGCTCTTCTCTACCTCC
TCCTGGCTTGTACAGGCGAACGCTTGGCAAACTCAGGACAAGGGTGGGTA
GCCGTCATCCTGTTCGGCCTCAGCTTTACCTTCTTTAATTTTGGACCAGG
ATCAACCACGTATTTATACCCTTCCAGATTATTCCCTAGGGACGTCAAGG
CGTCTTTGAATGGCGTGGCGGCGGCTGCGGGGAAGGTGGGTGGGTGGGTG
GGTGGGTACTTCTTTCCTCCCTTGTTGGATTCGTGGGGGTTAGAGGTTGT
GTTGGCCATGTGTGCGACGATTGCGTTGGTGGGTGCTGGGGTGACAGTTG
GGATGTTGGAGACGGATGTGAAGGGAATAGGAATGAGGGGGGAGGACGAG
GGGATGGAGGAGAATCGGGGAGGGAGGGGAGATGGAGAGGAGGAGGAGGA
GGTTGGGGGGTCAATGCTGCGGCTGTTGCCCGATGATGAGGAGTATGAGG
AGGAGGCGAGGGAGAAGATCACAACGGTGTAAGCATGATCGCCGGGCAGC
TTCTAGGTGGCTTGCTTGGGGATGCCTTGGGCCTCTCGCGTGCGTTCAAA
TTCATCATGCTGCTGCAAGTCGCAGGAGCTATGGGGAGCACATTGGTGTT
TCCACCTCAGATTTATTGGAAGCTGGCAGTGGCGAGGTTCTTCTTGGGGG
TGGGGGCAGGAGATGGCGATCAACAACAGCAGCTGGGTCGGCCGCCAGAG
ACAGTCCCTCCTTGCCTCCTTCCGCTTCCCGAAGACCCGCCTCAGCATGG
ACATTCTCCTTTCCTGCATCGGGGGCTTTAGCACGGCGTACAACATTGTC
AACATTTCGCTGGTCTTGGTGCTGATGGATGGGGTTTATCCTTTGTCCGA
AACTCACAAGAGTTTGTGTGCCTCGACCATGTTTGCGGACGATGTGGTGG
AAGACGCCACTGCGGCAGGAGCTGGGGAGGACGCCGAGGCGGCCCTCACC
CTCTCCTCCCTCCCTTCTTTGCCTTTGCAGGGGGAAGAACAAGTTGGGGT
GGGAGCATGGGCGGCGGGTGAGCATGTTTGGCTCGCATTGAGCGACACGG
GTTTGAGGCGGCGTTTGCTCGGATGCAGCCTAACATGGTTCTTGTATGAT
GTCTGTTTTTTTGGTAATACCCTGTTTCAGCCCGTGATAGGGACGATATT
GTTTGGCAAGGGAGGAGAGAATAAGGAGGGAGGGGAGGGGAGTGGTTGGA
GCAGTGGAGGTGGTAGTAGCGGGTTCTGGAGAAGCAGCAGCAGCAGCATT
GGGAATGAGGTGGACTACCGCGCGACTTTCCGGACGGATAGCCAGACAAG
TTTGATCTTGTCACTCATTGCCCTACCTGGATACTTTCTCTCTGTCCTTT
TTATCACGCGCCTGGGCCCGCGCTATATCCAAACGCAGGGATTCTTGGTA
TGTGCTCTTCTCTACCTCCTCCTGGCTTGTACAGGCGAACGCTTGGCAAA
CTCAGGACAAGGGTGGGTAGCCGTCATCCTGTTCGGCCTCAGCTTTACCT
TCTTTAATTTTGGACCAGGATCAACCACGTATTTATACCCTTCCAGATTA
TTCCCTAGGGACGTCAAGGCGTCTTTGAATGGCGTGGCGGCGGCTGCGGG
GAAGGTGGGTGGGTGGGTGGGTGGGTACTTCTTTCCTCCCTTGTTGGATT
CGTGGGGGTTAGAGGTTGTGTTGGCCATGTGTGCGACGATTGCGTTGGTG
GGTGCTGGGGTGACAGTTGGGATGTTGGAGACGGATGTGAAGGGAATAGG
AATGAGGGGGGAGGACGAGGGGATGGAGGAGAATCGGGGAGGGAGGGGAG
ATGGAGAGGAGGAGGAGGAGGTTGGGGGGTCAATGCTGCGGCTGTTGCCC
GATGATGAGGAGTATGAGGAGGAGGCGAGGGAGAAGATCACAACGGTGTA
AGCATGATCGCCGGGCAGCTTCTAGGTGGCTTGCTTGGGGATGCCTTGGG
CCTCTCGCGTGCGTTCAAATTCATCATGCTGCTGCAAGTCGCAGGAGCTA
TGGGGAGCACATTGGTGTTTCCACCTCAGATTTATTGGAAGCTGGCAGTG
GCGAGGTTCTTCTTGGGGGTGGGGGCAGGAGATGGCGATCAACAACAGCA
GCTGGGTCGGCCGCCAGAGACAGTCCCTCCTTGCCTCCTTCCGCTTCCCG
AAGACCCGCCTCAGCATGGACATTCTCCTTTCCTGCATCGGGGGCTTTAG
CACGGCGTACAACATTGTCAACATTTCGCTGGTCTTGGTGCTGATGGATG
GGGTTTATCCTTTGTCCGAAACTCACAAGAGTTTGTGTGCCTCGACCATG
TTTGCGG back to top
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